View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21627_high_13 (Length: 272)
Name: NF21627_high_13
Description: NF21627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21627_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 8 - 253
Target Start/End: Original strand, 44648236 - 44648481
Alignment:
| Q |
8 |
gacatcatcatggacatcaaattaaactccttcaatgaggtccacacatgaaagtgaaagcatagagtttagtttctattgagaagttcttctatcatct |
107 |
Q |
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| T |
44648236 |
gacatcatcatggacatcaaattaaactccttcaatgaggtccacacatgaaagttaaagcatagagtttagtttctattgagaagttcttctatcatct |
44648335 |
T |
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| Q |
108 |
gcaaagcaattttctgttcatcatccaaaccatttttacttaattcctctggctttgccttctctggcacagaagcacnnnnnnncctttctaactcaac |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
44648336 |
gcaaagcaattttctgttcatcatccaaaccatttttacttaattcctctggctttgccttctctggcacagaagcactttttttcctttctaactcaac |
44648435 |
T |
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| Q |
208 |
catcataatccaatttgattccgaacgaggacctgcacctttctgc |
253 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44648436 |
catcataatccaatttgattccgaacgaggacctgcacctttctgc |
44648481 |
T |
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