View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21627_high_8 (Length: 419)

Name: NF21627_high_8
Description: NF21627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21627_high_8
NF21627_high_8
[»] chr5 (20 HSPs)
chr5 (15-419)||(10764583-10764987)
chr5 (53-256)||(10610227-10610430)
chr5 (50-257)||(10563543-10563750)
chr5 (50-171)||(10748501-10748622)
chr5 (53-168)||(10603358-10603473)
chr5 (50-126)||(10218232-10218308)
chr5 (53-255)||(7191523-7191725)
chr5 (95-180)||(10718429-10718514)
chr5 (307-419)||(10563346-10563458)
chr5 (312-364)||(10748798-10748850)
chr5 (63-165)||(10579615-10579717)
chr5 (63-165)||(10589926-10590028)
chr5 (137-258)||(10742272-10742396)
chr5 (68-168)||(10599693-10599793)
chr5 (310-418)||(10610030-10610138)
chr5 (50-168)||(9837814-9837932)
chr5 (209-249)||(10653847-10653887)
chr5 (312-416)||(10718681-10718785)
chr5 (383-419)||(10549112-10549148)
chr5 (383-419)||(11049719-11049755)
[»] chr2 (2 HSPs)
chr2 (42-275)||(17924881-17925117)
chr2 (308-419)||(17925185-17925296)
[»] chr6 (10 HSPs)
chr6 (42-259)||(12930790-12931010)
chr6 (42-275)||(12956576-12956812)
chr6 (42-260)||(12947154-12947375)
chr6 (42-275)||(12905685-12905921)
chr6 (21-275)||(12898063-12898321)
chr6 (307-419)||(12956397-12956509)
chr6 (293-415)||(12946964-12947086)
chr6 (308-419)||(12905505-12905617)
chr6 (308-419)||(12897884-12897995)
chr6 (308-415)||(12930599-12930706)


Alignment Details
Target: chr5 (Bit Score: 397; Significance: 0; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 15 - 419
Target Start/End: Original strand, 10764583 - 10764987
Alignment:
Q  15 tattaacagctatggaaagcgcatgttgtttgctgcaatttgtcaaatattttaaaaactctaaatccattgtggaattgtcacctaaattgttttcttc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10764583 tattaacagctatggaaagcgcatgttgtttgctgcaatttgtcaaatattttaaaaactctaaatccattgtggaattgtcacctaaattgttttcttc 10764682  T
Q  115 caaatttagcaagccaagatgttgtaaattccctagacttggaacttgtccaaccaatttgtttgttcctatgtctagtaattgtatgacagacgcattt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  10764683 caaatttagcaagccaagatgttgtaaattccctagacttggaacttgtccaaccaatttgtttgttcctatgtctagtaattgtatgacagaagcattt 10764782  T
Q  215 gcaatcgaaacagggattgtacctgagaattgatttcctccaaaatttaatattttaagatcaaggaaagttattgtttgttactgaaaagacaataagt 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10764783 gcaatcgaaacagggattgtacctgagaattgatttcctccaaaatttaatattttaagatcaaggaaagttattgtttgttactgaaaagacaataagt 10764882  T
Q  315 gatgagatattataaagacaagatggaatcttaccagacaaattgttctcgccaaaagataaaaatgtcaagattttgaggcgacatatttcttgtggaa 414  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  10764883 gatgagatattataaagacaagatggaatcttaccagacaaattgttctcgccaaaagataaaaatgtcaagtttttgaggcgacatatttcttgtggaa 10764982  T
Q  415 tatct 419  Q
    |||||    
T  10764983 tatct 10764987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 53 - 256
Target Start/End: Complemental strand, 10610430 - 10610227
Alignment:
Q  53 tttgtcaaatattttaaaaactctaaatccattgtggaattgtcacctaaattgttttcttccaaatttagcaagccaagatgttgtaaattccctagac 152  Q
    ||||||||||||||||||||||||||||| || || ||||||| ||| |||| ||| | ||||||| | ||| ||  ||||| | |||| ||| ||||||    
T  10610430 tttgtcaaatattttaaaaactctaaatctatagttgaattgttaccgaaatagttgtattccaaactcagccagtaaagatctggtaacttctctagac 10610331  T
Q  153 ttggaacttgtccaaccaatttgtttgttcctatgtctagtaattgtatgacagacgcatttgcaatcgaaacagggattgtacctgagaattgatttcc 252  Q
    ||||||||||||||||||| ||||||   ||||  || | || ||||| |  ||| ||||||||||| ||||||||||||| ||||||||||||||||||    
T  10610330 ttggaacttgtccaaccaaattgttttgacctaaatcaattatttgtagggaagaagcatttgcaatggaaacagggattggacctgagaattgatttcc 10610231  T
Q  253 tcca 256  Q
    ||||    
T  10610230 tcca 10610227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 50 - 257
Target Start/End: Complemental strand, 10563750 - 10563543
Alignment:
Q  50 caatttgtcaaatattttaaaaactctaaatccattgtggaattgtcacctaaattgttttcttccaaatttagcaagccaagatgttgtaaattcccta 149  Q
    |||||||||||||| ||||||||||||||||| ||  | ||||||| |||||||||||| | | | ||| ||||| ||  ||||| |||||| ||| |||    
T  10563750 caatttgtcaaatagtttaaaaactctaaatctataattgaattgttacctaaattgttgtatccaaaacttagccagtaaagatcttgtaacttctcta 10563651  T
Q  150 gacttggaacttgtccaaccaatttgtttgttcctatgtctagtaattgtatgacagacgcatttgcaatcgaaacagggattgtacctgagaattgatt 249  Q
    |||||||||||||||| ||||| | ||||    ||| ||| |||| ||||| |  ||| |||||| |||| |||| |||||||| |||||||||||||||    
T  10563650 gacttggaacttgtcccaccaaatagttttgagctaagtcgagtacttgtagggaagaagcatttacaatggaaatagggattggacctgagaattgatt 10563551  T
Q  250 tcctccaa 257  Q
    | ||||||    
T  10563550 tgctccaa 10563543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 50 - 171
Target Start/End: Original strand, 10748501 - 10748622
Alignment:
Q  50 caatttgtcaaatattttaaaaactctaaatccattgtggaattgtcacctaaattgttttcttccaaatttagcaagccaagatgttgtaaattcccta 149  Q
    |||||||||||||| ||||||||||||||||| || || ||||||| ||| |||| ||| ||||||||||||||| ||  ||||| |||||| ||| |||    
T  10748501 caatttgtcaaatactttaaaaactctaaatcgatagttgaattgttaccgaaatagttgtcttccaaatttagccagtaaagatcttgtaacttctcta 10748600  T
Q  150 gacttggaacttgtccaaccaa 171  Q
    ||||||||||||| || |||||    
T  10748601 gacttggaacttgccccaccaa 10748622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 53 - 168
Target Start/End: Complemental strand, 10603473 - 10603358
Alignment:
Q  53 tttgtcaaatattttaaaaactctaaatccattgtggaattgtcacctaaattgttttcttccaaatttagcaagccaagatgttgtaaattccctagac 152  Q
    ||||||||  ||||||||||||| ||||| ||||| || |||||||||||| ||||   |||||||||||||||   ||||| || ||  ||||||||||    
T  10603473 tttgtcaatgattttaaaaactccaaatcaattgttgagttgtcacctaaaatgttcatttccaaatttagcaaataaagatcttttagcttccctagac 10603374  T
Q  153 ttggaacttgtccaac 168  Q
    ||||||||||||||||    
T  10603373 ttggaacttgtccaac 10603358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 126
Target Start/End: Original strand, 10218232 - 10218308
Alignment:
Q  50 caatttgtcaaatattttaaaaactctaaatccattgtggaattgtcacctaaattgttttcttccaaatttagcaa 126  Q
    |||||||||||| ||||||||||||| |||||| |||| |||||||||||||||| ||| | ||||||| |||||||    
T  10218232 caatttgtcaaagattttaaaaactccaaatcctttgttgaattgtcacctaaatagttgtattccaaacttagcaa 10218308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 53 - 255
Target Start/End: Complemental strand, 7191725 - 7191523
Alignment:
Q  53 tttgtcaaatattttaaaaactctaaatccattgtggaattgtcacctaaattgttttcttccaaatttagcaagccaagatgttgtaaattccctagac 152  Q
    ||||||||  |||||||||||||||||||| | |||||||||| ||||||| |||||   || | ||||| |   | |||||  ||||| ||||||||||    
T  7191725 tttgtcaaggattttaaaaactctaaatccttagtggaattgttacctaaactgtttagctctagatttaaccgtcgaagatcatgtaacttccctagac 7191626  T
Q  153 ttggaacttgtccaaccaatttgtttgttcctatgtctagtaattgtatgacagacgcatttgcaatcgaaacagggattgtacctgagaattgatttcc 252  Q
    ||||||||||||| ||||| ||||||    ||| ||| ||      || |  ||| ||||||| ||| |||| |||||||||||||||||||||||||||    
T  7191625 ttggaacttgtccgaccaaattgttttgatctaagtcaagattaaatagggaagaagcatttgaaatggaaatagggattgtacctgagaattgatttcc 7191526  T
Q  253 tcc 255  Q
    |||    
T  7191525 tcc 7191523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 95 - 180
Target Start/End: Original strand, 10718429 - 10718514
Alignment:
Q  95 tcacctaaattgttttcttccaaatttagcaagccaagatgttgtaaattccctagacttggaacttgtccaaccaatttgtttgt 180  Q
    |||||||||||||||  || ||||||||| || | ||||| |||||| | ||||| ||||||||||||||||||||| ||||||||    
T  10718429 tcacctaaattgtttgattgcaaatttagaaatcgaagattttgtaactcccctatacttggaacttgtccaaccaaattgtttgt 10718514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 307 - 419
Target Start/End: Complemental strand, 10563458 - 10563346
Alignment:
Q  307 caataagtgatgagatattataaagacaagatggaatcttaccagacaaattgttctcgccaaaagataaaaatgtcaagattttgaggcgacatatttc 406  Q
    |||| |||||||| ||||| |||| |||||  |||||| |||||||||| |||||||| || ||  |||||| ||||||| |||||||||| |||| |||    
T  10563458 caattagtgatgacatattgtaaatacaaggaggaatcataccagacaatttgttctcacccaacaataaaagtgtcaagtttttgaggcggcatacttc 10563359  T
Q  407 ttgtggaatatct 419  Q
      |||||||||||    
T  10563358 acgtggaatatct 10563346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 312 - 364
Target Start/End: Original strand, 10748798 - 10748850
Alignment:
Q  312 agtgatgagatattataaagacaagatggaatcttaccagacaaattgttctc 364  Q
    |||||||||||||||||||||||||| |||| | |||||||||||||||||||    
T  10748798 agtgatgagatattataaagacaagaaggaaacataccagacaaattgttctc 10748850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 63 - 165
Target Start/End: Complemental strand, 10579717 - 10579615
Alignment:
Q  63 attttaaaaactctaaatccattgtggaattgtcacctaaattgttttcttccaaatttagcaagccaagatgttgtaaattccctagacttggaacttg 162  Q
    |||||||||||||||||||| |  |||||||||||||||| ||||| |||| |||| ||||| | | ||| |  ||||  |||||||||| |||||||||    
T  10579717 attttaaaaactctaaatccttactggaattgtcacctaatttgttatcttgcaaacttagcgaccaaagtttctgtagcttccctagacatggaacttg 10579618  T
Q  163 tcc 165  Q
    |||    
T  10579617 tcc 10579615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 63 - 165
Target Start/End: Original strand, 10589926 - 10590028
Alignment:
Q  63 attttaaaaactctaaatccattgtggaattgtcacctaaattgttttcttccaaatttagcaagccaagatgttgtaaattccctagacttggaacttg 162  Q
    |||||||||||||||||||| |  |||||||||||||||| ||||| |||| |||| ||||| | | ||| |  ||||  |||||||||| |||||||||    
T  10589926 attttaaaaactctaaatccttactggaattgtcacctaatttgttatcttgcaaacttagcgaccaaagtttctgtagcttccctagacatggaacttg 10590025  T
Q  163 tcc 165  Q
    |||    
T  10590026 tcc 10590028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 258
Target Start/End: Original strand, 10742272 - 10742396
Alignment:
Q  137 tgtaaattccctagacttggaacttgtccaaccaatttgttt-gttc--ctatgtctagtaattgtatgacagacgcatttgcaatcgaaacagggattg 233  Q
    ||||| ||||| ||| ||||||||||||||||||| |||||| | ||  |||  || ||| |||||| | |||| ||||||||||| |||| ||||||||    
T  10742272 tgtaacttcccaagatttggaacttgtccaaccaaattgttttgatcacctaaatcaagtgattgtaaggcagaagcatttgcaatggaaatagggattg 10742371  T
Q  234 tacctgagaattgatttcctccaaa 258  Q
     ||||| |||||||||| |||||||    
T  10742372 gacctgtgaattgatttactccaaa 10742396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 68 - 168
Target Start/End: Complemental strand, 10599793 - 10599693
Alignment:
Q  68 aaaaactctaaatccattgtggaattgtcacctaaattgttttcttccaaatttagcaagccaagatgttgtaaattccctagacttggaacttgtccaa 167  Q
    |||||||  ||||||||||| ||  ||||||||||| ||||   |||||||||||||||   ||||| || ||  |||||||||||||||||||||||||    
T  10599793 aaaaactgcaaatccattgttgagctgtcacctaaaatgttcatttccaaatttagcaaataaagatcttttagcttccctagacttggaacttgtccaa 10599694  T
Q  168 c 168  Q
    |    
T  10599693 c 10599693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 310 - 418
Target Start/End: Complemental strand, 10610138 - 10610030
Alignment:
Q  310 taagtgatgagatattataaagacaagatggaatcttaccagacaaattgttctcgccaaaagataaaaatgtcaagattttgaggcgacatatttcttg 409  Q
    |||||| ||||||||| ||||||||||| |||||| |||||||||||| |||  | || | | |||||  | ||||  ||||||| |||||| |||||||    
T  10610138 taagtgctgagatattgtaaagacaagaaggaatcataccagacaaatagtttacacccataaataaacctctcaaatttttgagacgacatgtttcttg 10610039  T
Q  410 tggaatatc 418  Q
    |||||||||    
T  10610038 tggaatatc 10610030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 50 - 168
Target Start/End: Original strand, 9837814 - 9837932
Alignment:
Q  50 caatttgtcaaatattttaaaaactctaaatccattgtggaattgtcacctaaattgttttcttccaaatttagcaagccaagatgttgtaaattcccta 149  Q
    |||||||||| |  ||| |||||| |||||||| | || ||||||||||||| | ||||   ||| | |||||||||   ||||| |||||  |||||||    
T  9837814 caatttgtcatagttttcaaaaaccctaaatccttagttgaattgtcacctagaatgttcatttcaagatttagcaaattaagatcttgtagcttcccta 9837913  T
Q  150 gacttggaacttgtccaac 168  Q
    |||||||||||||||||||    
T  9837914 gacttggaacttgtccaac 9837932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 249
Target Start/End: Original strand, 10653847 - 10653887
Alignment:
Q  209 gcatttgcaatcgaaacagggattgtacctgagaattgatt 249  Q
    ||||||||||| |||| ||||||||||||||||||||||||    
T  10653847 gcatttgcaatggaaatagggattgtacctgagaattgatt 10653887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 416
Target Start/End: Original strand, 10718681 - 10718785
Alignment:
Q  312 agtgatgagatattataaagacaagatggaatcttaccagacaaattgttctcgccaaaagataaaaatgtcaagattttgaggcgacatatttcttgtg 411  Q
    |||||||||||||| |||| |||||| |||||  ||||||||||||||||     |   | |||||| ||||||| ||||||| |||||||||||| |||    
T  10718681 agtgatgagatattgtaaaaacaagaaggaattataccagacaaattgttaggatctgcatataaaattgtcaagtttttgagacgacatatttctggtg 10718780  T
Q  412 gaata 416  Q
    |||||    
T  10718781 gaata 10718785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 419
Target Start/End: Complemental strand, 10549148 - 10549112
Alignment:
Q  383 caagattttgaggcgacatatttcttgtggaatatct 419  Q
    |||| ||||||| ||||||||||||||||||||||||    
T  10549148 caagtttttgagacgacatatttcttgtggaatatct 10549112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 383 - 419
Target Start/End: Original strand, 11049719 - 11049755
Alignment:
Q  383 caagattttgaggcgacatatttcttgtggaatatct 419  Q
    |||| |||||||| |||||||||||||||||||||||    
T  11049719 caagcttttgaggtgacatatttcttgtggaatatct 11049755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 115; Significance: 3e-58; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 42 - 275
Target Start/End: Original strand, 17924881 - 17925117
Alignment:
Q  42 gtttgctgcaatttgtcaaatattttaaaaactctaaatccattgtggaattgtcacctaaattgttttcttccaaatttagcaagccaagatgttgtaa 141  Q
    |||| |||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||| | |  ||| | ||||||    
T  17924881 gtttactgcaatttgtcaaatattttaaaaactctaaatccatagttgaattatcacctaaattgttttcttccaaatttagaatggaaaggtcttgtaa 17924980  T
Q  142 attccctagacttggaacttgtccaaccaatt---tgtttgttcctatgtctagtaattgtatgacagacgcatttgcaatcgaaacagggattgtacct 238  Q
    |||||||||||||||||||||||||||||| |   |||||  |  || ||||| || ||||| | |||| || ||||||||||||| |||||||| ||||    
T  17924981 attccctagacttggaacttgtccaaccaaattcatgttttctgataagtctaatatttgtagggcagaagcgtttgcaatcgaaaaagggattggacct 17925080  T
Q  239 gagaattgatttcctccaaaatttaatattttaagat 275  Q
    ||||||||||||||| ||||||  |||||||||||||    
T  17925081 gagaattgatttcctgcaaaatcaaatattttaagat 17925117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 308 - 419
Target Start/End: Original strand, 17925185 - 17925296
Alignment:
Q  308 aataagtgatgagatattataaagacaagatggaatcttaccagacaaattgttctcgccaaaagataaaaatgtcaagattttgaggcgacatatttct 407  Q
    ||||||||||||||| |||||||||||||||||||||||||| || ||||||||||| || |||| |||||||||||||  |||| ||| ||||||||||    
T  17925185 aataagtgatgagatgttataaagacaagatggaatcttaccggaaaaattgttctcacccaaagctaaaaatgtcaagtgtttgcggcaacatatttct 17925284  T
Q  408 tgtggaatatct 419  Q
    ||||||||||||    
T  17925285 tgtggaatatct 17925296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 99; Significance: 1e-48; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 42 - 259
Target Start/End: Complemental strand, 12931010 - 12930790
Alignment:
Q  42 gtttgctgcaatttgtcaaatattttaaaaactctaaatccattgtggaattgtcacctaaattgttttcttccaaatttagcaagccaagatgttgtaa 141  Q
    |||| |||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||  |||||||| |||| |||  ||||| ||||||    
T  12931010 gtttactgcaatttgtcaaatattttaaaaactctaaatccatagttgaattgttacctaaattgttaacttccaaacttaggaaggaaagatcttgtaa 12930911  T
Q  142 attccctagacttggaacttgtccaaccaatt---tgtttgttcctatgtctagtaattgtatgacagacgcatttgcaatcgaaacagggattgtacct 238  Q
    |||||  ||||||||||||||||||||||| |   ||||  |||||| ||||| || ||||| | |||| |||||||||||||||  |||||||| ||||    
T  12930910 attcctaagacttggaacttgtccaaccaaattcatgttgtttcctaagtctaatatttgtagggcagaagcatttgcaatcgaagtagggattggacct 12930811  T
Q  239 gagaattgatttcctccaaaa 259  Q
    |||||||||||| || |||||    
T  12930810 gagaattgatttgctgcaaaa 12930790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 42 - 275
Target Start/End: Complemental strand, 12956812 - 12956576
Alignment:
Q  42 gtttgctgcaatttgtcaaatattttaaaaactctaaatccattgtggaattgtcacctaaattgttttcttccaaatttagcaagccaagatgttgtaa 141  Q
    |||| |||||||| ||||||||||||| ||| ||||||||||| || ||| ||| |||||||||||||  || |||||||||   |  ||| | ||||||    
T  12956812 gtttactgcaattagtcaaatattttagaaattctaaatccatagttgaaatgttacctaaattgtttgattgcaaatttagattggaaaggtcttgtaa 12956713  T
Q  142 attccctagacttggaacttgtccaaccaattt---gtttgttcctatgtctagtaattgtatgacagacgcatttgcaatcgaaacagggattgtacct 238  Q
    |||||||||||||||||||||||||||||| ||   |||   ||||| ||||| || ||||| | |||| |||||||||||||||| |||||||| ||||    
T  12956712 attccctagacttggaacttgtccaaccaaattcatgttgtctcctaagtctaatatttgtagggcagaagcatttgcaatcgaaatagggattggacct 12956613  T
Q  239 gagaattgatttcctccaaaatttaatattttaagat 275  Q
    |||||||||||| || ||||||  ||||||| |||||    
T  12956612 gagaattgatttgctgcaaaatcgaatatttgaagat 12956576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 42 - 260
Target Start/End: Complemental strand, 12947375 - 12947154
Alignment:
Q  42 gtttgctgcaatttgtcaaatattttaaaaactctaaatccattgtggaattgtcacctaaattgttttcttccaaatttagcaagccaagatgttgtaa 141  Q
    |||| |||||||||||||||||||||||||||||||| ||||| || ||| ||| ||||||||||||   ||||||| |||| |||  ||||| ||||||    
T  12947375 gtttactgcaatttgtcaaatattttaaaaactctaagtccatagttgaaatgttacctaaattgttaaattccaaacttaggaaggaaagatcttgtaa 12947276  T
Q  142 attccctagacttggaacttgtccaaccaatt---tgtttgttcctatgtctagtaattgtatgacagacgcatttgcaatcgaaacagggattgtacct 238  Q
    |||||  ||||||||||||||||||||||| |   ||||   ||||| ||||| |  ||||| | |||| ||||||||||| |||| ||| |||| ||||    
T  12947275 attcctaagacttggaacttgtccaaccaaattcatgttgtgtcctaagtctaatctttgtagggcagaagcatttgcaattgaaataggaattggacct 12947176  T
Q  239 gagaattgatttcctccaaaat 260  Q
    |||||||||||| |||||||||    
T  12947175 gagaattgatttgctccaaaat 12947154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 42 - 275
Target Start/End: Complemental strand, 12905921 - 12905685
Alignment:
Q  42 gtttgctgcaatttgtcaaatattttaaaaactctaaatccattgtggaattgtcacctaaattgttttcttccaaatttagcaagccaagatgttgtaa 141  Q
    |||| |||||||||||||||||||||||||||||||||||| | || ||| ||| ||||||||||||   | ||||| |||| | |  ||||| ||||||    
T  12905921 gtttactgcaatttgtcaaatattttaaaaactctaaatccttagttgaaatgttacctaaattgttgaatcccaaacttagaatggaaagattttgtaa 12905822  T
Q  142 attccctagacttggaacttgtccaaccaattt---gtttgttcctatgtctagtaattgtatgacagacgcatttgcaatcgaaacagggattgtacct 238  Q
    |||||||||||||||||||||||||||||| ||   |||| ||  || ||||| || ||||| | |||| |||||  ||||||||| |||||||| |||     
T  12905821 attccctagacttggaacttgtccaaccaaattcatgttttttgataagtctaatatttgtagggcagaagcattatcaatcgaaatagggattggacca 12905722  T
Q  239 gagaattgatttcctccaaaatttaatattttaagat 275  Q
    ||||||||||||  | |||||| ||||| ||||||||    
T  12905721 gagaattgatttgatgcaaaatgtaataatttaagat 12905685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 21 - 275
Target Start/End: Complemental strand, 12898321 - 12898063
Alignment:
Q  21 cagctatggaaagcgcatgttgtttgctgcaatttgtcaaatattttaaaaactctaaa-tccattgtggaattgtcacctaaattgttttcttccaaat 119  Q
    ||||||| |||||| ||| | |||| |||||||||||||||||||||||||| |||||| ||||| || ||| ||| ||||||||||||   | |||||     
T  12898321 cagctatcgaaagcacatttagtttactgcaatttgtcaaatattttaaaaaatctaaaatccatagttgaaatgttacctaaattgttgaatcccaaac 12898222  T
Q  120 ttagcaagccaagatgttgtaaattccctagacttggaacttgtccaaccaatt---tgtttgttcctatgtctagtaattgtatgacagacgcatttgc 216  Q
    |||| | |  ||||| |||||||||||||||||||||||||||||||||||| |   |||||  |  || ||||| || ||||| |  ||| ||||| ||    
T  12898221 ttagaatggaaagattttgtaaattccctagacttggaacttgtccaaccaaattcatgttttctgataagtctaatatttgtagggtagaagcattagc 12898122  T
Q  217 aatcgaaacagggattgtacctgagaattgatttcctccaaaatttaatattttaagat 275  Q
    |||||||| ||| |||| ||| |||||||||||||||||||||| ||| | ||||||||    
T  12898121 aatcgaaataggaattggaccagagaattgatttcctccaaaatgtaaaaatttaagat 12898063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 307 - 419
Target Start/End: Complemental strand, 12956509 - 12956397
Alignment:
Q  307 caataagtgatgagatattataaagacaagatggaatcttaccagacaaattgttctcgccaaaagataaaaatgtcaagattttgaggcgacatatttc 406  Q
    ||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| || |||| |||||||||||||  ||||  || |||||||||    
T  12956509 caataagtgatgagatattataaagacaagaaggaatcttaccggacaaattgttctcacccaaagctaaaaatgtcaagtgtttgcagcaacatatttc 12956410  T
Q  407 ttgtggaatatct 419  Q
    |||||||||||||    
T  12956409 ttgtggaatatct 12956397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 293 - 415
Target Start/End: Complemental strand, 12947086 - 12946964
Alignment:
Q  293 tgttactgaaaagacaataagtgatgagatattataaagacaagatggaatcttaccagacaaattgttctcgccaaaagataaaaatgtcaagattttg 392  Q
    |||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    |||| |||||||||||||  ||||    
T  12947086 tgttaccgaaaggacaataagtgatgagatattataaagacaagaaggaatcttaccggacaaattgttctcattcaaagctaaaaatgtcaagtgtttg 12946987  T
Q  393 aggcgacatatttcttgtggaat 415  Q
    ||   ||||||||||||||||||    
T  12946986 agaaaacatatttcttgtggaat 12946964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 308 - 419
Target Start/End: Complemental strand, 12905617 - 12905505
Alignment:
Q  308 aataagtgatgagatattataaagacaagatggaatcttaccagacaaattg-ttctcgccaaaagataaaaatgtcaagattttgaggcgacatatttc 406  Q
    |||||||||||||||||||||||||||||| || |||||||| ||||||||| ||||| || |||| |||||||||||||  |||||||  |||||||||    
T  12905617 aataagtgatgagatattataaagacaagaaggtatcttaccggacaaattgtttctcacccaaagctaaaaatgtcaagtgtttgaggaaacatatttc 12905518  T
Q  407 ttgtggaatatct 419  Q
    |||||||||||||    
T  12905517 ttgtggaatatct 12905505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 308 - 419
Target Start/End: Complemental strand, 12897995 - 12897884
Alignment:
Q  308 aataagtgatgagatattataaagacaagatggaatcttaccagacaaattgttctcgccaaaagataaaaatgtcaagattttgaggcgacatatttct 407  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||||||  | |  |||  |||| ||||||||  |||||||  ||||||||||    
T  12897995 aataagtgatgagatattataaagacaagaaggaatcttaccggacaaattgttgacactcaaacctaaatatgtcaagtgtttgaggaaacatatttct 12897896  T
Q  408 tgtggaatatct 419  Q
    ||||||||||||    
T  12897895 tgtggaatatct 12897884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 308 - 415
Target Start/End: Complemental strand, 12930706 - 12930599
Alignment:
Q  308 aataagtgatgagatattataaagacaagatggaatcttaccagacaaattgttctcgccaaaagataaaaatgtcaagattttgaggcgacatatttct 407  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |  | |  ||||| |||||||  |||||||  ||||||||||    
T  12930706 aataagtgatgagatattataaagacaagaaggaatcttaccggacaaattgttctcactcacacctaaaattgtcaagtgtttgaggaaacatatttct 12930607  T
Q  408 tgtggaat 415  Q
    ||||||||    
T  12930606 tgtggaat 12930599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University