View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21627_low_10 (Length: 407)
Name: NF21627_low_10
Description: NF21627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21627_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 228; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 58 - 399
Target Start/End: Complemental strand, 35227433 - 35227080
Alignment:
| Q |
58 |
atttctactagtcctgtcaatggtaggatgcaaattatattttgctttgaagcaaagcaattaaacaggtttggactcacttggaaaataattgggagag |
157 |
Q |
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| T |
35227433 |
atttctactagtcctgtcaatggtaggatgcaaattatattttgctttgaagcaaagcaattaaacaggtttggactcacttgcaaaataattgggagag |
35227334 |
T |
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| Q |
158 |
aacaaagtaacaagcgtgcacgatatgactacggtatttgaatgggacggtagacttatcactaattggtaaatatgaattccattgctt-aaaaaatat |
256 |
Q |
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| T |
35227333 |
aacaaagtaacaagcgtgcacgatatgactacggtatttgaatgggacggtagacttatcactaatttgtaaatatgaattccattggttaaaaaaaaat |
35227234 |
T |
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| Q |
257 |
ataaattcagttggatactttgatnnnnnnnnntta----------gccgaactaatttcaaagatttgatatagtagtaaaaagataggtcattaatct |
346 |
Q |
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| T |
35227233 |
ataaattcagttggatactttgataaaaaaaaattaaaaaaaattggccgaattaactccaaagatttgatatagtggtaaaaagataggtcataaatct |
35227134 |
T |
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| Q |
347 |
gaagaacgcatgttc-gacgctgaaatacacctaattcatagaacacctatgct |
399 |
Q |
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| T |
35227133 |
gaagaacgcatgttctgacgctgaaatacacataatccatacaacacctatgct |
35227080 |
T |
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