View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21627_low_17 (Length: 251)

Name: NF21627_low_17
Description: NF21627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21627_low_17
NF21627_low_17
[»] chr3 (16 HSPs)
chr3 (4-186)||(25413998-25414178)
chr3 (189-233)||(4481656-4481700)
chr3 (189-233)||(33069498-33069542)
chr3 (189-233)||(51302368-51302412)
chr3 (189-230)||(20647870-20647911)
chr3 (189-230)||(28793658-28793699)
chr3 (189-233)||(1782759-1782803)
chr3 (189-233)||(4357097-4357141)
chr3 (189-233)||(9338335-9338379)
chr3 (189-233)||(13596168-13596212)
chr3 (189-233)||(19420969-19421013)
chr3 (189-233)||(26994834-26994878)
chr3 (189-233)||(29076871-29076915)
chr3 (189-233)||(34705384-34705428)
chr3 (189-233)||(39391057-39391101)
chr3 (189-233)||(40000854-40000898)
[»] chr2 (11 HSPs)
chr2 (189-232)||(6420030-6420073)
chr2 (189-233)||(2182792-2182836)
chr2 (189-233)||(2995116-2995160)
chr2 (189-233)||(6283339-6283383)
chr2 (189-233)||(6431523-6431567)
chr2 (189-233)||(12033897-12033941)
chr2 (189-233)||(13029179-13029223)
chr2 (189-233)||(21198209-21198253)
chr2 (189-233)||(29044112-29044156)
chr2 (189-233)||(34726398-34726442)
chr2 (189-233)||(40737807-40737851)
[»] chr6 (10 HSPs)
chr6 (196-233)||(7458733-7458770)
chr6 (189-233)||(479252-479296)
chr6 (189-233)||(1101195-1101239)
chr6 (189-233)||(1558613-1558657)
chr6 (189-233)||(3027357-3027401)
chr6 (189-233)||(3729125-3729169)
chr6 (189-233)||(4111457-4111501)
chr6 (189-233)||(8437645-8437689)
chr6 (189-233)||(13276567-13276611)
chr6 (189-233)||(28890981-28891025)
[»] chr8 (11 HSPs)
chr8 (189-233)||(24580448-24580492)
chr8 (189-230)||(39506702-39506743)
chr8 (189-233)||(12637992-12638036)
chr8 (189-233)||(14921373-14921417)
chr8 (189-233)||(16365054-16365098)
chr8 (189-233)||(16383974-16384018)
chr8 (193-233)||(26106385-26106425)
chr8 (189-233)||(26241274-26241318)
chr8 (189-233)||(32551646-32551690)
chr8 (189-233)||(38600900-38600944)
chr8 (189-233)||(44755551-44755595)
[»] chr7 (11 HSPs)
chr7 (189-233)||(41892130-41892174)
chr7 (190-233)||(2941203-2941246)
chr7 (189-231)||(10227867-10227909)
chr7 (189-233)||(2732297-2732341)
chr7 (189-233)||(3356967-3357011)
chr7 (189-233)||(11410528-11410572)
chr7 (189-233)||(12419226-12419270)
chr7 (189-233)||(13391061-13391105)
chr7 (189-233)||(14776256-14776300)
chr7 (189-233)||(15757718-15757762)
chr7 (189-233)||(15943192-15943236)
[»] chr5 (9 HSPs)
chr5 (189-233)||(11877469-11877513)
chr5 (189-233)||(15397564-15397608)
chr5 (189-233)||(18158385-18158429)
chr5 (189-233)||(38254700-38254744)
chr5 (189-233)||(9163435-9163479)
chr5 (189-233)||(10017770-10017814)
chr5 (189-233)||(14949597-14949641)
chr5 (189-233)||(40083990-40084034)
chr5 (189-233)||(42062379-42062423)
[»] chr1 (11 HSPs)
chr1 (189-233)||(18353095-18353139)
chr1 (186-233)||(39860532-39860579)
chr1 (189-233)||(5500033-5500077)
chr1 (189-233)||(8417234-8417278)
chr1 (189-233)||(17805820-17805864)
chr1 (189-233)||(19507064-19507108)
chr1 (189-233)||(19709046-19709090)
chr1 (189-233)||(24038248-24038292)
chr1 (189-233)||(33785201-33785245)
chr1 (189-233)||(39919611-39919655)
chr1 (189-233)||(52222732-52222776)
[»] chr4 (11 HSPs)
chr4 (192-233)||(32212224-32212265)
chr4 (189-233)||(517555-517599)
chr4 (189-233)||(3097937-3097981)
chr4 (189-233)||(11845428-11845472)
chr4 (189-233)||(17981372-17981416)
chr4 (189-233)||(29590544-29590588)
chr4 (189-233)||(36488778-36488822)
chr4 (189-233)||(37011057-37011101)
chr4 (189-233)||(38308146-38308190)
chr4 (189-233)||(40730511-40730555)
chr4 (189-233)||(48826007-48826051)
[»] scaffold0129 (1 HSPs)
scaffold0129 (189-233)||(40907-40951)


Alignment Details
Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 4 - 186
Target Start/End: Original strand, 25413998 - 25414178
Alignment:
Q  4 tccacctataaaagctgttacgtaattatccaagattcaaactaagggaccaaacattatgttctatctcaaagcattgtcattttggtcaatgcgtaag 103  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||    
T  25413998 tccacctataaaagctgttacgtaattatccaagattcaaactaagggaccaaaaattatgttctatctcaaagcatggtcattttggtcaatgcgtaag 25414097  T
Q  104 ttatacgttatcgttaagtatagtgtctatgtggccttattcaagtctatatagtagttgagatgacactgatggaagtgtga 186  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||  ||||||||||||||||| || |||||||||||||    
T  25414098 ttatacgttatcgttaaatatagtgtctatgtggccttattcaagtc--tatagtagttgagatgaaacagatggaagtgtga 25414178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 4481700 - 4481656
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    ||||||||||||||||||||| ||||||| ||||| |||||||||    
T  4481700 ccaggctcaggcctttcaaagcctggcctggcctggcctattccc 4481656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 33069498 - 33069542
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||||||||||| ||||| |||||||||    
T  33069498 ccaggctcaggcctatcaaagtctggcctggcctggcctattccc 33069542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 51302412 - 51302368
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| ||||||||||||| |||||||||    
T  51302412 ccaggctcaggcctatcaaagcctggcctagcctggcctattccc 51302368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 230
Target Start/End: Original strand, 20647870 - 20647911
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctatt 230  Q
    |||||||||||||| |||||| ||||||| ||||||||||||    
T  20647870 ccaggctcaggcctatcaaagcctggcctggcctgacctatt 20647911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 230
Target Start/End: Complemental strand, 28793699 - 28793658
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctatt 230  Q
    |||||||||||||| |||||| ||||||| ||||||||||||    
T  28793699 ccaggctcaggcctatcaaagcctggcctggcctgacctatt 28793658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 1782759 - 1782803
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| ||||||| ||||| |||||||||    
T  1782759 ccaggctcaggcctatcaaagcctggcctggcctggcctattccc 1782803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 4357097 - 4357141
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| ||||||| ||||| |||||||||    
T  4357097 ccaggctcaggcctatcaaagcctggcctggcctggcctattccc 4357141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 9338335 - 9338379
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| ||||||| ||||| |||||||||    
T  9338335 ccaggctcaggcctatcaaagcctggcctggcctggcctattccc 9338379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 13596212 - 13596168
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| ||||||| ||||| |||||||||    
T  13596212 ccaggctcaggcctatcaaagcctggcctggcctggcctattccc 13596168  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 19421013 - 19420969
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| ||||||| ||||| |||||||||    
T  19421013 ccaggctcaggcctatcaaagcctggcctggcctggcctattccc 19420969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 26994834 - 26994878
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||||||||||| | ||| |||||||||    
T  26994834 ccaggctcaggcctatcaaagtctggcctggtctggcctattccc 26994878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 29076915 - 29076871
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| ||||||| ||||| |||||||||    
T  29076915 ccaggctcaggcctatcaaagcctggcctggcctggcctattccc 29076871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 34705384 - 34705428
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| ||||||| ||||| |||||||||    
T  34705384 ccaggctcaggcctatcaaagcctggcctggcctggcctattccc 34705428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 39391101 - 39391057
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| ||||||| ||||| |||||||||    
T  39391101 ccaggctcaggcctatcaaagcctggcctggcctggcctattccc 39391057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 40000854 - 40000898
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| ||||||| ||||| |||||||||    
T  40000854 ccaggctcaggcctatcaaagcctggcctggcctggcctattccc 40000898  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 232
Target Start/End: Original strand, 6420030 - 6420073
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattcc 232  Q
    |||||||||||||| |||||||||||||| ||||||||||||||    
T  6420030 ccaggctcaggcctatcaaagtctggcctggcctgacctattcc 6420073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 2182792 - 2182836
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| ||||||||||||||  |||| |||||||||    
T  2182792 ccaggctcaggcctatcaaagtctggcctgacctggcctattccc 2182836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 2995116 - 2995160
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| ||||||||||| || ||||| |||||||||    
T  2995116 ccaggctcaggcctatcaaagtctggtctggcctggcctattccc 2995160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 6283383 - 6283339
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||| |||| |||| |||||||||||||| |||||||||||||||    
T  6283383 ccagactcaagcctatcaaagtctggcctggcctgacctattccc 6283339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 6431567 - 6431523
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| |||||||  ||||||||||||||    
T  6431567 ccaggctcaggcctatcaaagcctggcctgacctgacctattccc 6431523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 12033897 - 12033941
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||||||||||| ||||  |||||||||    
T  12033897 ccaggctcaggcctatcaaagtctggcctggcctagcctattccc 12033941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 13029179 - 13029223
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| ||||||| ||||| |||||||||    
T  13029179 ccaggctcaggcctatcaaagcctggcctggcctggcctattccc 13029223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 21198209 - 21198253
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| ||||||| ||||| |||||||||    
T  21198209 ccaggctcaggcctatcaaagcctggcctggcctggcctattccc 21198253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 29044156 - 29044112
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| ||||||| ||||| |||||||||    
T  29044156 ccaggctcaggcctatcaaagcctggcctggcctggcctattccc 29044112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 34726398 - 34726442
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| ||||||| ||||| |||||||||    
T  34726398 ccaggctcaggcctatcaaagcctggcctggcctggcctattccc 34726442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 40737851 - 40737807
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| ||||||| ||||| |||||||||    
T  40737851 ccaggctcaggcctatcaaagcctggcctggcctggcctattccc 40737807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 196 - 233
Target Start/End: Complemental strand, 7458770 - 7458733
Alignment:
Q  196 caggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||||||||||| |||||||||||||||    
T  7458770 caggcctttcaaagtctggcctggcctgacctattccc 7458733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 479252 - 479296
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| |||| || |||||||||||||||    
T  479252 ccaggctcaggcctatcaaagcctggtctggcctgacctattccc 479296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 1101239 - 1101195
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| ||||||| ||||| |||||||||    
T  1101239 ccaggctcaggcctatcaaagcctggcctggcctggcctattccc 1101195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 1558657 - 1558613
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| ||| ||| |||||||||||||||    
T  1558657 ccaggctcaggcctatcaaagcctgacctggcctgacctattccc 1558613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 3027357 - 3027401
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| ||||||| ||||| |||||||||    
T  3027357 ccaggctcaggcctatcaaagcctggcctggcctggcctattccc 3027401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 3729125 - 3729169
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| ||||||| ||||| |||||||||    
T  3729125 ccaggctcaggcctatcaaagcctggcctggcctggcctattccc 3729169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 4111457 - 4111501
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| ||||||| ||||| |||||||||    
T  4111457 ccaggctcaggcctatcaaagcctggcctggcctggcctattccc 4111501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 8437645 - 8437689
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||| ||||||||| |||||||||||||| ||||| |||||||||    
T  8437645 ccagactcaggcctatcaaagtctggcctggcctggcctattccc 8437689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 13276611 - 13276567
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| ||||||| ||||| |||||||||    
T  13276611 ccaggctcaggcctatcaaagcctggcctggcctggcctattccc 13276567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 28890981 - 28891025
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| ||||||| ||||| |||||||||    
T  28890981 ccaggctcaggcctatcaaagcctggcctggcctggcctattccc 28891025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 24580492 - 24580448
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||||||||||| ||||| |||||||||    
T  24580492 ccaggctcaggcctatcaaagtctggcctggcctggcctattccc 24580448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 230
Target Start/End: Original strand, 39506702 - 39506743
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctatt 230  Q
    |||||||||||||||||||||||||| || ||||| ||||||    
T  39506702 ccaggctcaggcctttcaaagtctggtctggcctggcctatt 39506743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 12638036 - 12637992
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    ||||||| |||||| |||||| ||||||| |||||||||||||||    
T  12638036 ccaggcttaggcctatcaaagcctggcctggcctgacctattccc 12637992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 14921417 - 14921373
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| ||||||| ||||| |||||||||    
T  14921417 ccaggctcaggcctatcaaagcctggcctggcctggcctattccc 14921373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 16365054 - 16365098
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||| ||||||||| |||||||||||||| ||||| |||||||||    
T  16365054 ccagactcaggcctatcaaagtctggcctggcctggcctattccc 16365098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 16383974 - 16384018
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| ||||||| ||||| |||||||||    
T  16383974 ccaggctcaggcctatcaaagcctggcctggcctggcctattccc 16384018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 233
Target Start/End: Complemental strand, 26106425 - 26106385
Alignment:
Q  193 gctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    ||||||||||||||||| ||||||| ||||| |||||||||    
T  26106425 gctcaggcctttcaaagcctggcctggcctggcctattccc 26106385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 26241318 - 26241274
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| ||||||| ||||| |||||||||    
T  26241318 ccaggctcaggcctatcaaagcctggcctggcctggcctattccc 26241274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 32551646 - 32551690
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| ||||||| | |||||||||||||    
T  32551646 ccaggctcaggcctatcaaagcctggcctggtctgacctattccc 32551690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 38600900 - 38600944
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| ||||||| ||||| |||||||||    
T  38600900 ccaggctcaggcctatcaaagcctggcctggcctggcctattccc 38600944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 44755595 - 44755551
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| ||||||| ||||| |||||||||    
T  44755595 ccaggctcaggcctatcaaagcctggcctggcctggcctattccc 44755551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 41892174 - 41892130
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||||||||||| ||||| |||||||||    
T  41892174 ccaggctcaggcctatcaaagtctggcctggcctggcctattccc 41892130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 190 - 233
Target Start/End: Original strand, 2941203 - 2941246
Alignment:
Q  190 caggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    ||||||||||||| |||||||||||||| ||||| |||||||||    
T  2941203 caggctcaggcctatcaaagtctggcctggcctggcctattccc 2941246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 231
Target Start/End: Complemental strand, 10227909 - 10227867
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattc 231  Q
    |||||||||||||| |||||||||||||| ||||| |||||||    
T  10227909 ccaggctcaggcctatcaaagtctggcctggcctggcctattc 10227867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 2732341 - 2732297
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| ||||||| ||||| |||||||||    
T  2732341 ccaggctcaggcctatcaaagcctggcctggcctggcctattccc 2732297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 3357011 - 3356967
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| ||||||| ||||| |||||||||    
T  3357011 ccaggctcaggcctatcaaagcctggcctggcctggcctattccc 3356967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 11410572 - 11410528
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| ||||||| ||||| |||||||||    
T  11410572 ccaggctcaggcctatcaaagcctggcctggcctggcctattccc 11410528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 12419226 - 12419270
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| ||||||| ||||| |||||||||    
T  12419226 ccaggctcaggcctatcaaagcctggcctggcctggcctattccc 12419270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 13391105 - 13391061
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| ||||||| ||||| |||||||||    
T  13391105 ccaggctcaggcctatcaaagcctggcctggcctggcctattccc 13391061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 14776256 - 14776300
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| ||||||| ||||| |||||||||    
T  14776256 ccaggctcaggcctatcaaagcctggcctggcctggcctattccc 14776300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 15757718 - 15757762
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| ||| ||| |||||||||||||||    
T  15757718 ccaggctcaggcctatcaaagcctgacctggcctgacctattccc 15757762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 15943192 - 15943236
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| ||||||| ||||| |||||||||    
T  15943192 ccaggctcaggcctatcaaagcctggcctggcctggcctattccc 15943236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 11877513 - 11877469
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| ||||||| |||||||||||||||    
T  11877513 ccaggctcaggcctatcaaagcctggcctggcctgacctattccc 11877469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 15397608 - 15397564
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||| ||| |||||||||||||| |||||||||||||||    
T  15397608 ccaggctcagacctatcaaagtctggcctggcctgacctattccc 15397564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 18158429 - 18158385
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| ||||||| |||||||||||||||    
T  18158429 ccaggctcaggcctatcaaagcctggcctggcctgacctattccc 18158385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 38254744 - 38254700
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||||||||||| ||||| |||||||||    
T  38254744 ccaggctcaggcctatcaaagtctggcctggcctggcctattccc 38254700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 9163479 - 9163435
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| ||||||| ||||| |||||||||    
T  9163479 ccaggctcaggcctatcaaagcctggcctggcctggcctattccc 9163435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 10017814 - 10017770
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| ||||||| ||||| |||||||||    
T  10017814 ccaggctcaggcctatcaaagcctggcctggcctggcctattccc 10017770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 14949597 - 14949641
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||| ||| |||||| ||||||| |||||||||||||||    
T  14949597 ccaggctcagacctatcaaagcctggcctggcctgacctattccc 14949641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 40084034 - 40083990
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| ||||||| ||||| |||||||||    
T  40084034 ccaggctcaggcctatcaaagcctggcctggcctggcctattccc 40083990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 42062379 - 42062423
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| ||||||| ||||| |||||||||    
T  42062379 ccaggctcaggcctatcaaagcctggcctggcctggcctattccc 42062423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 18353139 - 18353095
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| ||||||| |||||||||||||||    
T  18353139 ccaggctcaggcctatcaaagcctggcctggcctgacctattccc 18353095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 186 - 233
Target Start/End: Original strand, 39860532 - 39860579
Alignment:
Q  186 agaccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    ||||||||||||||||| |||||| ||||||| ||||| |||||||||    
T  39860532 agaccaggctcaggcctatcaaagcctggcctggcctggcctattccc 39860579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 5500033 - 5500077
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| ||||||| ||||| |||||||||    
T  5500033 ccaggctcaggcctatcaaagcctggcctggcctggcctattccc 5500077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 8417278 - 8417234
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| ||||||| ||||| |||||||||    
T  8417278 ccaggctcaggcctatcaaagcctggcctggcctggcctattccc 8417234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 17805864 - 17805820
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| ||||||| ||||| |||||||||    
T  17805864 ccaggctcaggcctatcaaagcctggcctggcctggcctattccc 17805820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 19507108 - 19507064
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| |||| || |||||||||||||||    
T  19507108 ccaggctcaggcctatcaaagcctggtctggcctgacctattccc 19507064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 19709046 - 19709090
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| ||||||| ||||| |||||||||    
T  19709046 ccaggctcaggcctatcaaagcctggcctggcctggcctattccc 19709090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 24038292 - 24038248
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| |||||||  ||||||||||||||    
T  24038292 ccaggctcaggcctatcaaagcctggcctgacctgacctattccc 24038248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 33785245 - 33785201
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| ||||||| ||||| |||||||||    
T  33785245 ccaggctcaggcctatcaaagcctggcctggcctggcctattccc 33785201  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 39919655 - 39919611
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| ||||||| ||||| |||||||||    
T  39919655 ccaggctcaggcctatcaaagcctggcctggcctggcctattccc 39919611  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 52222776 - 52222732
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| ||||||| ||||| |||||||||    
T  52222776 ccaggctcaggcctatcaaagcctggcctggcctggcctattccc 52222732  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 192 - 233
Target Start/End: Complemental strand, 32212265 - 32212224
Alignment:
Q  192 ggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    ||||||||||| |||||| ||||||||||||| |||||||||    
T  32212265 ggctcaggcctatcaaagcctggcctagcctggcctattccc 32212224  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 517599 - 517555
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||| ||| ||||||||||||||  ||||||||||||||    
T  517599 ccaggctcagacctatcaaagtctggcctgacctgacctattccc 517555  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 3097937 - 3097981
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| ||||||| ||||| |||||||||    
T  3097937 ccaggctcaggcctatcaaagcctggcctggcctggcctattccc 3097981  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 11845428 - 11845472
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| ||||||| ||||| |||||||||    
T  11845428 ccaggctcaggcctatcaaagcctggcctggcctggcctattccc 11845472  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 17981372 - 17981416
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| ||||||||||| || ||||| |||||||||    
T  17981372 ccaggctcaggcctatcaaagtctggtctggcctggcctattccc 17981416  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 29590544 - 29590588
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| ||||||| ||||| |||||||||    
T  29590544 ccaggctcaggcctatcaaagcctggcctggcctggcctattccc 29590588  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 36488822 - 36488778
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||| ||| |||||||||||||| ||||| |||||||||    
T  36488822 ccaggctcagacctatcaaagtctggcctggcctggcctattccc 36488778  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 37011057 - 37011101
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||||||||||| ||||  |||||||||    
T  37011057 ccaggctcaggcctatcaaagtctggcctggcctagcctattccc 37011101  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 38308146 - 38308190
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| ||||||| ||||| |||||||||    
T  38308146 ccaggctcaggcctatcaaagcctggcctggcctggcctattccc 38308190  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Original strand, 40730511 - 40730555
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| ||||||| ||||| |||||||||    
T  40730511 ccaggctcaggcctatcaaagcctggcctggcctggcctattccc 40730555  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 48826051 - 48826007
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| ||||||| ||||| |||||||||    
T  48826051 ccaggctcaggcctatcaaagcctggcctggcctggcctattccc 48826007  T

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Target: scaffold0129 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 233
Target Start/End: Complemental strand, 40951 - 40907
Alignment:
Q  189 ccaggctcaggcctttcaaagtctggcctagcctgacctattccc 233  Q
    |||||||||||||| |||||| ||||||| ||||| |||||||||    
T  40951 ccaggctcaggcctatcaaagcctggcctggcctggcctattccc 40907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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