View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21627_low_2 (Length: 664)

Name: NF21627_low_2
Description: NF21627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21627_low_2
NF21627_low_2
[»] scaffold0333 (1 HSPs)
scaffold0333 (31-192)||(311-472)
[»] scaffold0247 (1 HSPs)
scaffold0247 (449-592)||(1359-1501)
[»] scaffold0184 (3 HSPs)
scaffold0184 (256-365)||(16372-16482)
scaffold0184 (222-264)||(16666-16708)
scaffold0184 (632-664)||(28729-28761)
[»] scaffold0078 (3 HSPs)
scaffold0078 (256-365)||(56362-56472)
scaffold0078 (222-264)||(56136-56178)
scaffold0078 (632-664)||(44083-44115)
[»] chr5 (8 HSPs)
chr5 (435-592)||(31062003-31062158)
chr5 (222-254)||(17626138-17626170)
chr5 (215-254)||(36739093-36739132)
chr5 (224-254)||(22972271-22972301)
chr5 (216-254)||(42475559-42475597)
chr5 (222-254)||(7552854-7552886)
chr5 (222-254)||(39591832-39591864)
chr5 (222-254)||(39592224-39592256)
[»] chr6 (5 HSPs)
chr6 (435-627)||(29483580-29483762)
chr6 (222-254)||(16199602-16199634)
chr6 (222-254)||(26595501-26595533)
chr6 (219-262)||(1156869-1156912)
chr6 (216-254)||(21968781-21968819)
[»] chr7 (16 HSPs)
chr7 (452-593)||(11310718-11310859)
chr7 (1-100)||(17985262-17985360)
chr7 (222-254)||(7701696-7701728)
chr7 (215-255)||(31445463-31445503)
chr7 (222-254)||(46022154-46022186)
chr7 (215-254)||(6522160-6522199)
chr7 (215-254)||(43942777-43942816)
chr7 (222-256)||(3614331-3614365)
chr7 (18-68)||(10501286-10501336)
chr7 (18-68)||(14156967-14157017)
chr7 (216-250)||(35207645-35207679)
chr7 (222-251)||(32803841-32803870)
chr7 (222-255)||(35072248-35072281)
chr7 (222-255)||(35098589-35098622)
chr7 (222-262)||(17002488-17002528)
chr7 (215-255)||(38347690-38347730)
[»] scaffold0007 (2 HSPs)
scaffold0007 (435-578)||(163691-163832)
scaffold0007 (435-578)||(160421-160562)
[»] scaffold0014 (2 HSPs)
scaffold0014 (450-586)||(78784-78919)
scaffold0014 (1-100)||(113203-113301)
[»] chr1 (10 HSPs)
chr1 (435-576)||(10812042-10812182)
chr1 (556-627)||(13515896-13515966)
chr1 (215-252)||(30570669-30570706)
chr1 (215-255)||(10338984-10339024)
chr1 (215-254)||(18512230-18512269)
chr1 (580-627)||(35568981-35569028)
chr1 (215-253)||(50726136-50726174)
chr1 (225-254)||(46907350-46907379)
chr1 (226-254)||(21401554-21401582)
chr1 (215-255)||(30735179-30735219)
[»] chr8 (6 HSPs)
chr8 (1-100)||(3844592-3844691)
chr8 (219-252)||(32133472-32133505)
chr8 (215-256)||(34639678-34639719)
chr8 (215-254)||(10839369-10839408)
chr8 (222-256)||(29025412-29025446)
chr8 (215-253)||(42768349-42768387)
[»] chr3 (16 HSPs)
chr3 (1-62)||(17393132-17393193)
chr3 (556-626)||(15080413-15080483)
chr3 (13-112)||(14263502-14263601)
chr3 (222-254)||(21217664-21217696)
chr3 (222-254)||(33791669-33791701)
chr3 (222-254)||(37056944-37056976)
chr3 (222-254)||(44383341-44383373)
chr3 (222-252)||(23592610-23592640)
chr3 (222-252)||(23600745-23600775)
chr3 (13-110)||(2280862-2280959)
chr3 (219-252)||(28539629-28539662)
chr3 (215-256)||(39630502-39630543)
chr3 (222-254)||(13348021-13348053)
chr3 (222-254)||(25641470-25641502)
chr3 (222-254)||(35376968-35377000)
chr3 (222-254)||(52326171-52326203)
[»] chr2 (11 HSPs)
chr2 (222-258)||(136076-136112)
chr2 (222-254)||(3097748-3097780)
chr2 (222-254)||(25270469-25270501)
chr2 (215-254)||(8848584-8848623)
chr2 (13-68)||(15855371-15855426)
chr2 (219-253)||(32701239-32701273)
chr2 (221-255)||(37078133-37078167)
chr2 (222-252)||(41056636-41056666)
chr2 (222-254)||(13333057-13333089)
chr2 (215-255)||(18846756-18846796)
chr2 (228-256)||(27490615-27490643)
[»] scaffold0148 (1 HSPs)
scaffold0148 (215-254)||(20788-20827)
[»] scaffold0044 (1 HSPs)
scaffold0044 (569-620)||(4813-4864)
[»] chr4 (11 HSPs)
chr4 (212-253)||(31090591-31090632)
chr4 (222-254)||(38382473-38382505)
chr4 (222-254)||(47181993-47182025)
chr4 (222-254)||(48402084-48402116)
chr4 (222-254)||(2575677-2575709)
chr4 (219-255)||(26724858-26724894)
chr4 (222-254)||(34616713-34616745)
chr4 (222-254)||(39195209-39195241)
chr4 (215-255)||(39259098-39259138)
chr4 (215-255)||(42395923-42395963)
chr4 (222-254)||(56363932-56363964)


Alignment Details
Target: scaffold0333 (Bit Score: 118; Significance: 7e-60; HSPs: 1)
Name: scaffold0333
Description:

Target: scaffold0333; HSP #1
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 31 - 192
Target Start/End: Original strand, 311 - 472
Alignment:
Q  31 tgaaacgttctcaaaataaatattgggtttaaggaagttattagagtgtatacatgagtatgtatttatgaagtggtgatattaaatgatatgatgatgt 130  Q
    |||||| |||||||||| ||||||| | |||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||  |||||||    
T  311 tgaaactttctcaaaattaatattgaggttaaggaagttattagagtgtataaatgagtatgtatttatgaagttgtgatattaaatgatacaatgatgt 410  T
Q  131 tggttgtgaagtttggcttaagttgcgaagttttgtgatttgtgtaaaaaacgaataataat 192  Q
    |||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||    
T  411 tggttgtgaagtttagcttaagttgtgaagttttgtgatttgtgtgaaaaacgaataataat 472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 92; Significance: 2e-44; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 449 - 592
Target Start/End: Complemental strand, 1501 - 1359
Alignment:
Q  449 ccaaaaacaactgattatgaaccaaaagcatgaatatgaacatgttaattcaccaattcatcgaaaatcaatatatacataattacccactaattaggag 548  Q
    |||||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||| | ||||| | |||| ||||||||||||||||||||||||    
T  1501 ccaaaaaccacttattatgaatcaaaagcatgaatatgaacatgttaattcaccaattcaac-aaaattagtatacacataattacccactaattaggag 1403  T
Q  549 catgaatttcaccaaacaaaatcatcaatttatcaattcaacaa 592  Q
     | ||||||||| ||||||||||||||||| |||||||||||||    
T  1402 tacgaatttcacaaaacaaaatcatcaattcatcaattcaacaa 1359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 91; Significance: 9e-44; HSPs: 3)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 256 - 365
Target Start/End: Complemental strand, 16482 - 16372
Alignment:
Q  256 ataataatgaccaatggcatatgctcttacatcacaa-ccatgtaagtactcttttatgaaaacttttgcttcttatgacaaccaaatttttatttgaat 354  Q
    |||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  16482 ataataatgactgatggcatatgctcttacatcacaaaccatgtaagtactcttttatgaaaacttttgcttcttatgacaaccaaatttttatttgaag 16383  T
Q  355 gaaatgacaac 365  Q
    |||||||||||    
T  16382 gaaatgacaac 16372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 222 - 264
Target Start/End: Complemental strand, 16708 - 16666
Alignment:
Q  222 tcatataaatggatgttcaaataacacaactctaataataatg 264  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  16708 tcatataaatggatgttcaaataacagaactctaataataatg 16666  T

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Target: scaffold0184; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 632 - 664
Target Start/End: Original strand, 28729 - 28761
Alignment:
Q  632 aaaccttaatgggcctctaaaactcatgtcact 664  Q
    |||||||||||||||||||||||||||||||||    
T  28729 aaaccttaatgggcctctaaaactcatgtcact 28761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 91; Significance: 9e-44; HSPs: 3)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 256 - 365
Target Start/End: Original strand, 56362 - 56472
Alignment:
Q  256 ataataatgaccaatggcatatgctcttacatcacaa-ccatgtaagtactcttttatgaaaacttttgcttcttatgacaaccaaatttttatttgaat 354  Q
    |||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  56362 ataataatgactgatggcatatgctcttacatcacaaaccatgtaagtactcttttatgaaaacttttgcttcttatgacaaccaaatttttatttgaag 56461  T
Q  355 gaaatgacaac 365  Q
    |||||||||||    
T  56462 gaaatgacaac 56472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 222 - 264
Target Start/End: Original strand, 56136 - 56178
Alignment:
Q  222 tcatataaatggatgttcaaataacacaactctaataataatg 264  Q
    |||||||||||||||||||||||||| ||||||||||||||||    
T  56136 tcatataaatggatgttcaaataacagaactctaataataatg 56178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 632 - 664
Target Start/End: Complemental strand, 44115 - 44083
Alignment:
Q  632 aaaccttaatgggcctctaaaactcatgtcact 664  Q
    |||||||||||||||||||||||||||||||||    
T  44115 aaaccttaatgggcctctaaaactcatgtcact 44083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 4e-43; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 435 - 592
Target Start/End: Original strand, 31062003 - 31062158
Alignment:
Q  435 ttaagtaaaaatcaccaaaaacaactgattatgaaccaaaagcatgaatatgaacatgttaattcaccaattcatcgaaaatcaatatatacataattac 534  Q
    ||||| ||||||| |||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||  |||||| | |||| ||||||||||    
T  31062003 ttaagcaaaaatc-ccaaaaaccacttattatgaatcaaaagcatgaatatgaacatgttaattcaccaattcaa-gaaaattagtatacacataattac 31062100  T
Q  535 ccactaattaggagcatgaatttcaccaaacaaaatcatcaatttatcaattcaacaa 592  Q
    |||||||||||||| | ||||||||| ||| ||||||||||||| |||||||||||||    
T  31062101 ccactaattaggagtacgaatttcacaaaataaaatcatcaattcatcaattcaacaa 31062158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 222 - 254
Target Start/End: Original strand, 17626138 - 17626170
Alignment:
Q  222 tcatataaatggatgttcaaataacacaactct 254  Q
    |||||||||||||||||||||||||||||||||    
T  17626138 tcatataaatggatgttcaaataacacaactct 17626170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 254
Target Start/End: Original strand, 36739093 - 36739132
Alignment:
Q  215 aaaattatcatataaatggatgttcaaataacacaactct 254  Q
    |||||||||| ||| |||||||||||||||||||||||||    
T  36739093 aaaattatcacatatatggatgttcaaataacacaactct 36739132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 224 - 254
Target Start/End: Original strand, 22972271 - 22972301
Alignment:
Q  224 atataaatggatgttcaaataacacaactct 254  Q
    |||||||||||||||||||||||||||||||    
T  22972271 atataaatggatgttcaaataacacaactct 22972301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 216 - 254
Target Start/End: Complemental strand, 42475597 - 42475559
Alignment:
Q  216 aaattatcatataaatggatgttcaaataacacaactct 254  Q
    ||||||||| |||||||| ||||||||||||||||||||    
T  42475597 aaattatcacataaatggttgttcaaataacacaactct 42475559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 222 - 254
Target Start/End: Complemental strand, 7552886 - 7552854
Alignment:
Q  222 tcatataaatggatgttcaaataacacaactct 254  Q
    |||| ||||||||||||||||||||||||||||    
T  7552886 tcatctaaatggatgttcaaataacacaactct 7552854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 222 - 254
Target Start/End: Original strand, 39591832 - 39591864
Alignment:
Q  222 tcatataaatggatgttcaaataacacaactct 254  Q
    |||||||||| ||||||||||||||||||||||    
T  39591832 tcatataaatagatgttcaaataacacaactct 39591864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 222 - 254
Target Start/End: Original strand, 39592224 - 39592256
Alignment:
Q  222 tcatataaatggatgttcaaataacacaactct 254  Q
    |||||||||| ||||||||||||||||||||||    
T  39592224 tcatataaatagatgttcaaataacacaactct 39592256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 6e-42; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 435 - 627
Target Start/End: Complemental strand, 29483762 - 29483580
Alignment:
Q  435 ttaagtaaaaatcaccaaaaacaactgattatgaaccaaaagcatgaatatgaacatgttaattcaccaattcatcgaaaatcaatatatacataattac 534  Q
    ||||| ||||||||| |||||| ||| ||||| ||||||||| ||||||||||||||||||||||| ||||||| | ||||| | |||| ||||||||||    
T  29483762 ttaagcaaaaatcac-aaaaaccacttattataaaccaaaagaatgaatatgaacatgttaattcatcaattcagcaaaaattagtatacacataattac 29483664  T
Q  535 ccactaattaggagcatgaatttcaccaaacaaaatcatcaatttatcaattcaacaattaatcataagctaaaacaagaagaaaagtgatta 627  Q
    |||||||||| ||||| |||||||||||||||||||||||        |||||||||||| ||||||||||| ||||| ||||||||||||||    
T  29483663 ccactaattatgagcacgaatttcaccaaacaaaatcatc--------aattcaacaattgatcataagctagaacaa-aagaaaagtgatta 29483580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 222 - 254
Target Start/End: Original strand, 16199602 - 16199634
Alignment:
Q  222 tcatataaatggatgttcaaataacacaactct 254  Q
    |||||||||||||||||||||||||||||||||    
T  16199602 tcatataaatggatgttcaaataacacaactct 16199634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 222 - 254
Target Start/End: Original strand, 26595501 - 26595533
Alignment:
Q  222 tcatataaatggatgttcaaataacacaactct 254  Q
    |||||||||||||||||||||||||||||||||    
T  26595501 tcatataaatggatgttcaaataacacaactct 26595533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 219 - 262
Target Start/End: Original strand, 1156869 - 1156912
Alignment:
Q  219 ttatcatataaatggatgttcaaataacacaactctaataataa 262  Q
    |||||| ||| ||||||||||||||||||||||||||| |||||    
T  1156869 ttatcaaatatatggatgttcaaataacacaactctaaaaataa 1156912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 216 - 254
Target Start/End: Complemental strand, 21968819 - 21968781
Alignment:
Q  216 aaattatcatataaatggatgttcaaataacacaactct 254  Q
    ||||||||| |||||||||| ||||||||||||||||||    
T  21968819 aaattatcaaataaatggatcttcaaataacacaactct 21968781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 2e-38; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 452 - 593
Target Start/End: Original strand, 11310718 - 11310859
Alignment:
Q  452 aaaacaactgattatgaaccaaaagcatgaatatgaacatgttaattcaccaattcatcgaaaatcaatatatacataattacccactaattaggagcat 551  Q
    ||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||| | ||||| | |||| ||||||||||||||||| || ||| |     
T  11310718 aaaaccacttattatgaatcaaaagcatgaatatgaacatgttaattcaccaattcaacaaaaattagtatacacataattacccactaactatgagtac 11310817  T
Q  552 gaatttcaccaaacaaaatcatcaatttatcaattcaacaat 593  Q
    ||||||| | ||||||||||||||||| ||||||||||||||    
T  11310818 gaatttctcaaaacaaaatcatcaattaatcaattcaacaat 11310859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 17985262 - 17985360
Alignment:
Q  1 aaatttcagcacaactttttctttgaaccatgaaacgttctcaaaataaatattgggtttaaggaagttattagagtgtatacatgagtatgtatttatg 100  Q
    |||||||||||||||||||| | |||||| |||||| | |||||||| |||||||||||||| |||||  |||||||| |||  |||||||||| |||||    
T  17985262 aaatttcagcacaacttttt-tatgaaccgtgaaacttcctcaaaattaatattgggtttaatgaagtatttagagtgaataattgagtatgtaattatg 17985360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 222 - 254
Target Start/End: Original strand, 7701696 - 7701728
Alignment:
Q  222 tcatataaatggatgttcaaataacacaactct 254  Q
    |||||||||||||||||||||||||||||||||    
T  7701696 tcatataaatggatgttcaaataacacaactct 7701728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 31445463 - 31445503
Alignment:
Q  215 aaaattatcatataaatggatgttcaaataacacaactcta 255  Q
    ||||||||||||||||  |||||||||||||||||||||||    
T  31445463 aaaattatcatataaaatgatgttcaaataacacaactcta 31445503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 222 - 254
Target Start/End: Complemental strand, 46022186 - 46022154
Alignment:
Q  222 tcatataaatggatgttcaaataacacaactct 254  Q
    |||||||||||||||||||||||||||||||||    
T  46022186 tcatataaatggatgttcaaataacacaactct 46022154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 254
Target Start/End: Complemental strand, 6522199 - 6522160
Alignment:
Q  215 aaaattatcatataaatggatgttcaaataacacaactct 254  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  6522199 aaaattatcatataaatgattgttcaaataacacaactct 6522160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 254
Target Start/End: Original strand, 43942777 - 43942816
Alignment:
Q  215 aaaattatcatataaatggatgttcaaataacacaactct 254  Q
    |||||||||| ||| |||||||||||||||||||||||||    
T  43942777 aaaattatcacatatatggatgttcaaataacacaactct 43942816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 222 - 256
Target Start/End: Complemental strand, 3614365 - 3614331
Alignment:
Q  222 tcatataaatggatgttcaaataacacaactctaa 256  Q
    |||||||||||||||||||||||||| ||||||||    
T  3614365 tcatataaatggatgttcaaataacataactctaa 3614331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 10501286 - 10501336
Alignment:
Q  18 tttctttgaaccatgaaacgttctcaaaataaatattgggtttaaggaagt 68  Q
    ||||| |||||| |||||| |||||||||| |||||||||||||| |||||    
T  10501286 tttctatgaaccgtgaaactttctcaaaattaatattgggtttaatgaagt 10501336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 14156967 - 14157017
Alignment:
Q  18 tttctttgaaccatgaaacgttctcaaaataaatattgggtttaaggaagt 68  Q
    ||||| |||||| |||||| |||||||||| |||||||||||||| |||||    
T  14156967 tttctatgaaccgtgaaactttctcaaaattaatattgggtttaatgaagt 14157017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 216 - 250
Target Start/End: Original strand, 35207645 - 35207679
Alignment:
Q  216 aaattatcatataaatggatgttcaaataacacaa 250  Q
    |||||||| ||||||||||||||||||||||||||    
T  35207645 aaattatcctataaatggatgttcaaataacacaa 35207679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 251
Target Start/End: Original strand, 32803841 - 32803870
Alignment:
Q  222 tcatataaatggatgttcaaataacacaac 251  Q
    ||||||||||||||||||||||||||||||    
T  32803841 tcatataaatggatgttcaaataacacaac 32803870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 255
Target Start/End: Complemental strand, 35072281 - 35072248
Alignment:
Q  222 tcatataaatggatgttcaaataacacaactcta 255  Q
    ||||||||||||||||||| ||||||||||||||    
T  35072281 tcatataaatggatgttcagataacacaactcta 35072248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 255
Target Start/End: Complemental strand, 35098622 - 35098589
Alignment:
Q  222 tcatataaatggatgttcaaataacacaactcta 255  Q
    |||||||||||||| |||||||||||||||||||    
T  35098622 tcatataaatggatattcaaataacacaactcta 35098589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 222 - 262
Target Start/End: Original strand, 17002488 - 17002528
Alignment:
Q  222 tcatataaatggatgttcaaataacacaactctaataataa 262  Q
    |||||||||  |||||||||||||||||||||||| |||||    
T  17002488 tcatataaaatgatgttcaaataacacaactctaaaaataa 17002528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 38347690 - 38347730
Alignment:
Q  215 aaaattatcatataaatggatgttcaaataacacaactcta 255  Q
    |||||||| | ||||||| ||||||||||||||||||||||    
T  38347690 aaaattattagataaatgtatgttcaaataacacaactcta 38347730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 80; Significance: 3e-37; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 435 - 578
Target Start/End: Complemental strand, 163832 - 163691
Alignment:
Q  435 ttaagtaaaaatcaccaaaaacaactgattatgaaccaaaagcatgaatatgaacatgttaattcaccaattcatcgaaaatcaatatatacataattac 534  Q
    ||||| ||||||| |||||||| ||| |||||||| |||||||||||||||||| ||||||||||||||||||| | ||||| | |||| ||||||||||    
T  163832 ttaagcaaaaatc-ccaaaaaccacttattatgaatcaaaagcatgaatatgaatatgttaattcaccaattcaac-aaaattagtatacacataattac 163735  T
Q  535 ccactaattaggagcatgaatttcaccaaacaaaatcatcaatt 578  Q
    |||||||||||||| | ||||||||| |||||||||||||||||    
T  163734 ccactaattaggagtacgaatttcacaaaacaaaatcatcaatt 163691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 435 - 578
Target Start/End: Complemental strand, 160562 - 160421
Alignment:
Q  435 ttaagtaaaaatcaccaaaaacaactgattatgaaccaaaagcatgaatatgaacatgttaattcaccaattcatcgaaaatcaatatatacataattac 534  Q
    ||||| ||||||| |||||||| | | |||||||| |||||||||||||||||||||||||||||||||||||| | ||||| | |||| ||||||||||    
T  160562 ttaagcaaaaatc-ccaaaaaccaattattatgaatcaaaagcatgaatatgaacatgttaattcaccaattcaac-aaaattagtatacacataattac 160465  T
Q  535 ccactaattaggagcatgaatttcaccaaacaaaatcatcaatt 578  Q
    |||||| ||||||| | ||||||||| |||||||||||||||||    
T  160464 ccactacttaggagtacgaatttcacaaaacaaaatcatcaatt 160421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 450 - 586
Target Start/End: Original strand, 78784 - 78919
Alignment:
Q  450 caaaaacaactgattatgaaccaaaagcatgaatatgaacatgttaattcaccaattcatcgaaaatcaatatatacataattacccactaattaggagc 549  Q
    ||||||| ||| ||||||||||||||| ||||||||||||||||||||||| ||||||| | ||||| | |||| ||||||||| |||||||||||||||    
T  78784 caaaaaccacttattatgaaccaaaagaatgaatatgaacatgttaattcatcaattcaacaaaaattagtatacacataattatccactaattaggagc 78883  T
Q  550 atgaatttcaccaaacaaaatcatcaatttatcaatt 586  Q
    | |||||||||| ||||||||||||||| || |||||    
T  78884 acgaatttcacc-aacaaaatcatcaatataacaatt 78919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 113301 - 113203
Alignment:
Q  1 aaatttcagcacaactttttctttgaaccatgaaacgttctcaaaataaatattgggtttaaggaagttattagagtgtatacatgagtatgtatttatg 100  Q
    |||||||||||||||||||||| |||||| |||||| |||||||||| || |||||||||||  ||||  |||||||| |||  ||||||||||||||||    
T  113301 aaatttcagcacaactttttctctgaaccgtgaaactttctcaaaattaa-attgggtttaatcaagtctttagagtgaataattgagtatgtatttatg 113203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 8e-29; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 435 - 576
Target Start/End: Complemental strand, 10812182 - 10812042
Alignment:
Q  435 ttaagtaaaaatcaccaaaaacaactgattatgaaccaaaagcatgaatatgaacatgttaattcaccaattcatcgaaaatcaatatatacataattac 534  Q
    ||||| ||||||| || ||||| ||| |||||||| |||||||||||||||||||||||||||||||||||||| | ||||| | |||| ||||||||||    
T  10812182 ttaagcaaaaatc-cctaaaaccacttattatgaatcaaaagcatgaatatgaacatgttaattcaccaattcaacaaaaattagtatacacataattac 10812084  T
Q  535 ccactaattaggagcatgaatttcaccaaacaaaatcatcaa 576  Q
    ||||||| || ||| | | ||||| | |||||||||||||||    
T  10812083 ccactaactatgagtacggatttctcaaaacaaaatcatcaa 10812042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 556 - 627
Target Start/End: Original strand, 13515896 - 13515966
Alignment:
Q  556 ttcaccaaacaaaatcatcaatttatcaattcaacaattaatcataagctaaaacaagaagaaaagtgatta 627  Q
    ||||||||||||||||||||||| |||||||||||| ||||   ||||||| | ||| ||||||||||||||    
T  13515896 ttcaccaaacaaaatcatcaattcatcaattcaacatttaaatgtaagctagatcaa-aagaaaagtgatta 13515966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 252
Target Start/End: Original strand, 30570669 - 30570706
Alignment:
Q  215 aaaattatcatataaatggatgttcaaataacacaact 252  Q
    |||||||||||||||||| |||||||||||||||||||    
T  30570669 aaaattatcatataaatgaatgttcaaataacacaact 30570706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 10339024 - 10338984
Alignment:
Q  215 aaaattatcatataaatggatgttcaaataacacaactcta 255  Q
    |||||||||||| |||||| |||||||||||||||||||||    
T  10339024 aaaattatcataaaaatggttgttcaaataacacaactcta 10338984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 254
Target Start/End: Complemental strand, 18512269 - 18512230
Alignment:
Q  215 aaaattatcatataaatggatgttcaaataacacaactct 254  Q
    ||||||||||||||||| |||||| |||||||||||||||    
T  18512269 aaaattatcatataaattgatgttgaaataacacaactct 18512230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 580 - 627
Target Start/End: Original strand, 35568981 - 35569028
Alignment:
Q  580 atcaattcaacaattaatcataagctaaaacaagaagaaaagtgatta 627  Q
    ||||||||| |||||||| |||||||| ||||||| ||||||||||||    
T  35568981 atcaattcatcaattaattataagctagaacaagatgaaaagtgatta 35569028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 215 - 253
Target Start/End: Complemental strand, 50726174 - 50726136
Alignment:
Q  215 aaaattatcatataaatggatgttcaaataacacaactc 253  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  50726174 aaaattatcacatatatggatgttcaaataacacaactc 50726136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 254
Target Start/End: Original strand, 46907350 - 46907379
Alignment:
Q  225 tataaatggatgttcaaataacacaactct 254  Q
    ||||||||||||||||||||||||||||||    
T  46907350 tataaatggatgttcaaataacacaactct 46907379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 226 - 254
Target Start/End: Original strand, 21401554 - 21401582
Alignment:
Q  226 ataaatggatgttcaaataacacaactct 254  Q
    |||||||||||||||||||||||||||||    
T  21401554 ataaatggatgttcaaataacacaactct 21401582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 30735219 - 30735179
Alignment:
Q  215 aaaattatcatataaatggatgttcaaataacacaactcta 255  Q
    |||||||||| ||| |||||| |||||||||||||||||||    
T  30735219 aaaattatcacatacatggatattcaaataacacaactcta 30735179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 3844592 - 3844691
Alignment:
Q  1 aaatttcagcacaactttttctttgaaccatgaaacgttctcaaaataaatattgggtttaaggaagttattagagtgtatacatgagtatgtatttatg 100  Q
    |||||||||||||||||| ||| |||||  ||||||||||||||||| ||||||||||| || |||||  ||| |||| |||  ||||||||||||||||    
T  3844592 aaatttcagcacaactttctctatgaactgtgaaacgttctcaaaattaatattgggttaaatgaagtatttatagtgaataattgagtatgtatttatg 3844691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 219 - 252
Target Start/End: Original strand, 32133472 - 32133505
Alignment:
Q  219 ttatcatataaatggatgttcaaataacacaact 252  Q
    ||||||||||||||||||||||||||||||||||    
T  32133472 ttatcatataaatggatgttcaaataacacaact 32133505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 215 - 256
Target Start/End: Original strand, 34639678 - 34639719
Alignment:
Q  215 aaaattatcatataaatggatgttcaaataacacaactctaa 256  Q
    ||||||||||| ||||||||||||||||||||| ||||||||    
T  34639678 aaaattatcatgtaaatggatgttcaaataacataactctaa 34639719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 254
Target Start/End: Complemental strand, 10839408 - 10839369
Alignment:
Q  215 aaaattatcatataaatggatgttcaaataacacaactct 254  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  10839408 aaaattatcataaaaatggatgttcaaataacactactct 10839369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 222 - 256
Target Start/End: Original strand, 29025412 - 29025446
Alignment:
Q  222 tcatataaatggatgttcaaataacacaactctaa 256  Q
    ||||||||||||||||| |||||||||||||||||    
T  29025412 tcatataaatggatgtttaaataacacaactctaa 29025446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 215 - 253
Target Start/End: Original strand, 42768349 - 42768387
Alignment:
Q  215 aaaattatcatataaatggatgttcaaataacacaactc 253  Q
    |||||||||| ||| ||||||||||||||||||||||||    
T  42768349 aaaattatcacatatatggatgttcaaataacacaactc 42768387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 17393193 - 17393132
Alignment:
Q  1 aaatttcagcacaactttttctttgaaccatgaaacgttctcaaaataaatattgggtttaa 62  Q
    |||||||||||||||||| ||| |||||| |||||| |||||||||| ||||||||||||||    
T  17393193 aaatttcagcacaactttctctatgaaccgtgaaactttctcaaaattaatattgggtttaa 17393132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 556 - 626
Target Start/End: Original strand, 15080413 - 15080483
Alignment:
Q  556 ttcaccaaacaaaatcatcaatttatcaattcaacaattaatcataagctaaaacaagaagaaaagtgatt 626  Q
    ||||||||||||||||| ||||| |||||||||||| |||| | ||||||| | ||| |||||||||||||    
T  15080413 ttcaccaaacaaaatcagcaattcatcaattcaacatttaaacgtaagctagatcaaaaagaaaagtgatt 15080483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 13 - 112
Target Start/End: Complemental strand, 14263601 - 14263502
Alignment:
Q  13 aactttttctttgaaccatgaaacgttctcaaaataaatattgggtttaaggaagttattagagtgtatacatgagtatgtatttatgaagtggtgatat 112  Q
    |||||||||  |||||||||||||  ||||||||| |||||||  |||||||||||  ||||| || ||| ||||||||||| | ||||| | |||||||    
T  14263601 aactttttcaatgaaccatgaaacactctcaaaattaatattgattttaaggaagtatttagaatgaataaatgagtatgtaatcatgaacttgtgatat 14263502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 222 - 254
Target Start/End: Original strand, 21217664 - 21217696
Alignment:
Q  222 tcatataaatggatgttcaaataacacaactct 254  Q
    |||||||||||||||||||||||||||||||||    
T  21217664 tcatataaatggatgttcaaataacacaactct 21217696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 222 - 254
Target Start/End: Complemental strand, 33791701 - 33791669
Alignment:
Q  222 tcatataaatggatgttcaaataacacaactct 254  Q
    |||||||||||||||||||||||||||||||||    
T  33791701 tcatataaatggatgttcaaataacacaactct 33791669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 222 - 254
Target Start/End: Complemental strand, 37056976 - 37056944
Alignment:
Q  222 tcatataaatggatgttcaaataacacaactct 254  Q
    |||||||||||||||||||||||||||||||||    
T  37056976 tcatataaatggatgttcaaataacacaactct 37056944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 222 - 254
Target Start/End: Original strand, 44383341 - 44383373
Alignment:
Q  222 tcatataaatggatgttcaaataacacaactct 254  Q
    |||||||||||||||||||||||||||||||||    
T  44383341 tcatataaatggatgttcaaataacacaactct 44383373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 222 - 252
Target Start/End: Original strand, 23592610 - 23592640
Alignment:
Q  222 tcatataaatggatgttcaaataacacaact 252  Q
    |||||||||||||||||||||||||||||||    
T  23592610 tcatataaatggatgttcaaataacacaact 23592640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 222 - 252
Target Start/End: Original strand, 23600745 - 23600775
Alignment:
Q  222 tcatataaatggatgttcaaataacacaact 252  Q
    |||||||||||||||||||||||||||||||    
T  23600745 tcatataaatggatgttcaaataacacaact 23600775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 13 - 110
Target Start/End: Complemental strand, 2280959 - 2280862
Alignment:
Q  13 aactttttctttgaaccatgaaacgttctcaaaataaatattgggtttaaggaagttattagagtgtatacatgagtatgtatttatgaagtggtgat 110  Q
    |||||||||  ||||||||||||| |  | ||||| ||||||| ||||| ||||||  ||| |||| ||| ||||||||||| | ||||||| |||||    
T  2280959 aactttttcaatgaaccatgaaacatcttaaaaattaatattgagtttagggaagtctttatagtgaataaatgagtatgtaatcatgaagttgtgat 2280862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 252
Target Start/End: Complemental strand, 28539662 - 28539629
Alignment:
Q  219 ttatcatataaatggatgttcaaataacacaact 252  Q
    ||||||| ||||||||||||||||||||||||||    
T  28539662 ttatcatctaaatggatgttcaaataacacaact 28539629  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 256
Target Start/End: Complemental strand, 39630543 - 39630502
Alignment:
Q  215 aaaattatcatataaatggatgttcaaataacacaactctaa 256  Q
    |||||||| |||||||| ||||||||||||||| ||||||||    
T  39630543 aaaattattatataaatagatgttcaaataacaaaactctaa 39630502  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 222 - 254
Target Start/End: Complemental strand, 13348053 - 13348021
Alignment:
Q  222 tcatataaatggatgttcaaataacacaactct 254  Q
    |||||||||||||||||||||||||| ||||||    
T  13348053 tcatataaatggatgttcaaataacataactct 13348021  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 222 - 254
Target Start/End: Complemental strand, 25641502 - 25641470
Alignment:
Q  222 tcatataaatggatgttcaaataacacaactct 254  Q
    |||||||||||||||||||||||| ||||||||    
T  25641502 tcatataaatggatgttcaaataatacaactct 25641470  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 222 - 254
Target Start/End: Complemental strand, 35377000 - 35376968
Alignment:
Q  222 tcatataaatggatgttcaaataacacaactct 254  Q
    |||| ||||||||||||||||||||||||||||    
T  35377000 tcatctaaatggatgttcaaataacacaactct 35376968  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 222 - 254
Target Start/End: Original strand, 52326171 - 52326203
Alignment:
Q  222 tcatataaatggatgttcaaataacacaactct 254  Q
    ||||||| |||||||||||||||||||||||||    
T  52326171 tcatatatatggatgttcaaataacacaactct 52326203  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 222 - 258
Target Start/End: Original strand, 136076 - 136112
Alignment:
Q  222 tcatataaatggatgttcaaataacacaactctaata 258  Q
    |||||||||||||||||||||||||||||||||||||    
T  136076 tcatataaatggatgttcaaataacacaactctaata 136112  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 222 - 254
Target Start/End: Complemental strand, 3097780 - 3097748
Alignment:
Q  222 tcatataaatggatgttcaaataacacaactct 254  Q
    |||||||||||||||||||||||||||||||||    
T  3097780 tcatataaatggatgttcaaataacacaactct 3097748  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 222 - 254
Target Start/End: Complemental strand, 25270501 - 25270469
Alignment:
Q  222 tcatataaatggatgttcaaataacacaactct 254  Q
    |||||||||||||||||||||||||||||||||    
T  25270501 tcatataaatggatgttcaaataacacaactct 25270469  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 254
Target Start/End: Complemental strand, 8848623 - 8848584
Alignment:
Q  215 aaaattatcatataaatggatgttcaaataacacaactct 254  Q
    ||||||||||| ||||| ||||||||||||||||||||||    
T  8848623 aaaattatcatctaaatagatgttcaaataacacaactct 8848584  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 15855426 - 15855371
Alignment:
Q  13 aactttttctttgaaccatgaaacgttctcaaaataaatattgggtttaaggaagt 68  Q
    |||||||||  ||||||||||||| | |||||||| ||||||| ||||||||||||    
T  15855426 aactttttcaatgaaccatgaaacatcctcaaaattaatattgagtttaaggaagt 15855371  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 219 - 253
Target Start/End: Original strand, 32701239 - 32701273
Alignment:
Q  219 ttatcatataaatggatgttcaaataacacaactc 253  Q
    ||||||||||||||| |||||||||||||||||||    
T  32701239 ttatcatataaatggttgttcaaataacacaactc 32701273  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 221 - 255
Target Start/End: Original strand, 37078133 - 37078167
Alignment:
Q  221 atcatataaatggatgttcaaataacacaactcta 255  Q
    ||||||||||| |||||||||||||||||||||||    
T  37078133 atcatataaatagatgttcaaataacacaactcta 37078167  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 222 - 252
Target Start/End: Complemental strand, 41056666 - 41056636
Alignment:
Q  222 tcatataaatggatgttcaaataacacaact 252  Q
    |||||||||||||||||||||||||||||||    
T  41056666 tcatataaatggatgttcaaataacacaact 41056636  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 222 - 254
Target Start/End: Complemental strand, 13333089 - 13333057
Alignment:
Q  222 tcatataaatggatgttcaaataacacaactct 254  Q
    |||||||||| ||||||||||||||||||||||    
T  13333089 tcatataaatcgatgttcaaataacacaactct 13333057  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 18846756 - 18846796
Alignment:
Q  215 aaaattatcatataaatggatgttcaaataacacaactcta 255  Q
    |||||| |||| ||||||||||||||||||||| |||||||    
T  18846756 aaaattgtcatctaaatggatgttcaaataacataactcta 18846796  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 228 - 256
Target Start/End: Complemental strand, 27490643 - 27490615
Alignment:
Q  228 aaatggatgttcaaataacacaactctaa 256  Q
    |||||||||||||||||||||||||||||    
T  27490643 aaatggatgttcaaataacacaactctaa 27490615  T

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Target: scaffold0148 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 215 - 254
Target Start/End: Complemental strand, 20827 - 20788
Alignment:
Q  215 aaaattatcatataaatggatgttcaaataacacaactct 254  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  20827 aaaattatcatttaaatggatgttcaaataacacaactct 20788  T

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Target: scaffold0044 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 569 - 620
Target Start/End: Complemental strand, 4864 - 4813
Alignment:
Q  569 atcatcaatttatcaattcaacaattaatcataagctaaaacaagaagaaaa 620  Q
    ||||| |||| |||||||||||||||||||| |||||| |||||||||||||    
T  4864 atcatgaattcatcaattcaacaattaatcacaagctagaacaagaagaaaa 4813  T

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Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 253
Target Start/End: Complemental strand, 31090632 - 31090591
Alignment:
Q  212 ttcaaaattatcatataaatggatgttcaaataacacaactc 253  Q
    ||||||||||||||||||||||||||| ||||| ||||||||    
T  31090632 ttcaaaattatcatataaatggatgtttaaatatcacaactc 31090591  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 222 - 254
Target Start/End: Original strand, 38382473 - 38382505
Alignment:
Q  222 tcatataaatggatgttcaaataacacaactct 254  Q
    |||||||||||||||||||||||||||||||||    
T  38382473 tcatataaatggatgttcaaataacacaactct 38382505  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 222 - 254
Target Start/End: Original strand, 47181993 - 47182025
Alignment:
Q  222 tcatataaatggatgttcaaataacacaactct 254  Q
    |||||||||||||||||||||||||||||||||    
T  47181993 tcatataaatggatgttcaaataacacaactct 47182025  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 222 - 254
Target Start/End: Complemental strand, 48402116 - 48402084
Alignment:
Q  222 tcatataaatggatgttcaaataacacaactct 254  Q
    |||||||||||||||||||||||||||||||||    
T  48402116 tcatataaatggatgttcaaataacacaactct 48402084  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 222 - 254
Target Start/End: Complemental strand, 2575709 - 2575677
Alignment:
Q  222 tcatataaatggatgttcaaataacacaactct 254  Q
    |||||||||| ||||||||||||||||||||||    
T  2575709 tcatataaatagatgttcaaataacacaactct 2575677  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 219 - 255
Target Start/End: Complemental strand, 26724894 - 26724858
Alignment:
Q  219 ttatcatataaatggatgttcaaataacacaactcta 255  Q
    |||||| ||| ||||||||||||||||||||||||||    
T  26724894 ttatcacatatatggatgttcaaataacacaactcta 26724858  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 222 - 254
Target Start/End: Original strand, 34616713 - 34616745
Alignment:
Q  222 tcatataaatggatgttcaaataacacaactct 254  Q
    |||||||||| ||||||||||||||||||||||    
T  34616713 tcatataaatagatgttcaaataacacaactct 34616745  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 222 - 254
Target Start/End: Original strand, 39195209 - 39195241
Alignment:
Q  222 tcatataaatggatgttcaaataacacaactct 254  Q
    |||||||||| ||||||||||||||||||||||    
T  39195209 tcatataaatagatgttcaaataacacaactct 39195241  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 215 - 255
Target Start/End: Original strand, 39259098 - 39259138
Alignment:
Q  215 aaaattatcatataaatggatgttcaaataacacaactcta 255  Q
    |||||| |||| ||||||||| |||||||||||||||||||    
T  39259098 aaaattgtcatctaaatggatattcaaataacacaactcta 39259138  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 215 - 255
Target Start/End: Complemental strand, 42395963 - 42395923
Alignment:
Q  215 aaaattatcatataaatggatgttcaaataacacaactcta 255  Q
    ||||||||||||||| | |||||||||||||||||| ||||    
T  42395963 aaaattatcatataagtagatgttcaaataacacaattcta 42395923  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 222 - 254
Target Start/End: Complemental strand, 56363964 - 56363932
Alignment:
Q  222 tcatataaatggatgttcaaataacacaactct 254  Q
    |||| ||||||||||||||||||||||||||||    
T  56363964 tcatgtaaatggatgttcaaataacacaactct 56363932  T

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