View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21627_low_5 (Length: 603)
Name: NF21627_low_5
Description: NF21627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21627_low_5 |
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| [»] scaffold0756 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 233 - 582
Target Start/End: Complemental strand, 12157821 - 12157475
Alignment:
| Q |
233 |
tattgatattgatattatatttgtgttttcacatgcatgttgaatattctaccatgcattttatcattccatgaatttacaatagaggaatacaatgatt |
332 |
Q |
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| T |
12157821 |
tattgatattgacagtatatttgtgttttcacatgcatgttgaatattcaaccatgcatttcatcatttcatgaatttacaatataggaatacaatgatt |
12157722 |
T |
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| Q |
333 |
aaattgtatgagatatagaaatagtgtcaatgaaactaatatagattgagttgattggttttgttatgaaggtgtgctcaaacaacatgcagagtaagtc |
432 |
Q |
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| T |
12157721 |
aaattgtacgagatataaaaataggctcaatgaaactaatatagattgagttgattagttgtgttatgatggt---ctcaaacaacatgcaaagtaagtt |
12157625 |
T |
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| Q |
433 |
ggatctagaaaaaaccatatgtgaagatagtgaaaagtggactaaggttacctttaagcctgatttgaagatgtttaaaatgaaacgttttgaagaggac |
532 |
Q |
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| T |
12157624 |
gggtctaaaaacaatcacatgtgaagatggtgaaaagtggaccaaggtgatcgttaagcttgatttgaagatgtttaacatgaaatgttttgaagataac |
12157525 |
T |
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| Q |
533 |
attgttgctttgatgaagaagcgtgtggtggacatggcagggttcctcgg |
582 |
Q |
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| T |
12157524 |
attgttgctttaatgaagaagtgtgtggtggacatgacagggatcctcgg |
12157475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 98; Significance: 6e-48; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 109 - 230
Target Start/End: Original strand, 32374335 - 32374456
Alignment:
| Q |
109 |
cttttaacagagagaaccggttagcaggtgaagaactttaaaatatgggtgacgtggcgcggcaattgagcgagtgtttgtaagcaagtgttagagcatc |
208 |
Q |
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| T |
32374335 |
cttttaacggagagaaccggttaacaggtgaagaactttaaaaaatgggtgacgtggcgcggcaattgagcgagtgtttgtaagcaactgttagagcatc |
32374434 |
T |
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| Q |
209 |
tgtacctagcagttctcatatt |
230 |
Q |
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| T |
32374435 |
tgtccctagcagttctcttatt |
32374456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 32374242 - 32374304
Alignment:
| Q |
13 |
cagatgctaatgactgaagaggtggagacgtaaaaaagaggggcctttatattttttaattat |
75 |
Q |
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| T |
32374242 |
cagatactaatgactgaagagatggaggcgtaaaaaaggggggcctttatattttttaattat |
32374304 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 445 - 575
Target Start/End: Complemental strand, 9875825 - 9875695
Alignment:
| Q |
445 |
aaccatatgtgaagatagtgaaaagtggactaaggttacctttaagcctgatttgaagatgtttaaaatgaaacgttttgaagaggacattgttgctttg |
544 |
Q |
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| T |
9875825 |
aaccaaatgtaaagctaatgagaactggaccaaggtgacctttaagcctgacttggagaagtttaaaatgacctatcttgaagaggacgttgttgctttg |
9875726 |
T |
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| Q |
545 |
atgaagaagcgtgtggtggacatggcagggt |
575 |
Q |
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| T |
9875725 |
atgaaaaagcgtgtgctggacatggcagggt |
9875695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 460 - 575
Target Start/End: Complemental strand, 38840670 - 38840555
Alignment:
| Q |
460 |
tagtgaaaagtggactaaggttacctttaagcctgatttgaagatgtttaaaatgaaacgttttgaagaggacattgttgctttgatgaagaagcgtgtg |
559 |
Q |
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| T |
38840670 |
tagtgagaactggacaaaggtaacctttaagcctgacttggaaaagttcaaaatgacatatcttgaagaggaccttgttgctttgatgaagaagcgtgtg |
38840571 |
T |
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| Q |
560 |
gtggacatggcagggt |
575 |
Q |
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| T |
38840570 |
ttggatatggcagggt |
38840555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 112 - 225
Target Start/End: Original strand, 7499849 - 7499962
Alignment:
| Q |
112 |
ttaacagagagaaccggttagcaggtgaagaactttaaaatatgggtgacgtggcgcggcaattgagcgagtgtttgtaagcaagtgttagagcatctgt |
211 |
Q |
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| T |
7499849 |
ttaacggagagaatcgagtaacagatgaagaactttaaaaaatgggtgatgtggctcagcaattgagcgagtgtttgtaagcgaccgtttgagaatctgt |
7499948 |
T |
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| Q |
212 |
acctagcagttctc |
225 |
Q |
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| T |
7499949 |
tcctagcagttctc |
7499962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 7499765 - 7499820
Alignment:
| Q |
16 |
atgctaatgactgaagaggtggagacgtaaaaaagaggggcctttatattttttaat |
72 |
Q |
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| T |
7499765 |
atgctaatgaccgaagaggtggagacgttaaaaa-tgaggcctttatattttttaat |
7499820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 522 - 586
Target Start/End: Original strand, 20098405 - 20098469
Alignment:
| Q |
522 |
ttgaagaggacattgttgctttgatgaagaagcgtgtggtggacatggcagggttcctcggtgat |
586 |
Q |
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| T |
20098405 |
ttgaagaggacgttgtagctttgatgaaaaagcgtgtgctggacatggcagggtgccttggtgat |
20098469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0756 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0756
Description:
Target: scaffold0756; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 522 - 586
Target Start/End: Complemental strand, 3854 - 3790
Alignment:
| Q |
522 |
ttgaagaggacattgttgctttgatgaagaagcgtgtggtggacatggcagggttcctcggtgat |
586 |
Q |
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||||||||||| |||| ||||||||||| ||||||||| |||| |||||||||| ||| |||||| |
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| T |
3854 |
ttgaagaggacgttgtagctttgatgaaaaagcgtgtgctggatatggcagggtgccttggtgat |
3790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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