View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21627_low_6 (Length: 578)
Name: NF21627_low_6
Description: NF21627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21627_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 427; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 18 - 570
Target Start/End: Original strand, 8944401 - 8944950
Alignment:
| Q |
18 |
gctttgtatataatatttgatcagctcagcagtactaatgagtaaaccatcaaattggcttatgattttgtgaagttcttttaaataggtatgtcaaatt |
117 |
Q |
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| T |
8944401 |
gctttgtatataatgtttgatcagctcagcagtg---acgagtaaaccatcaaattggcctatgattttgtgaagttcttttaaataggtatgtcaaatt |
8944497 |
T |
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| Q |
118 |
atgaatatttcaaatgttacatgacgtcgttttaatgttactcacattcatccttttgtcaaacttagttgcttaacatcgttttactgggacgaaattg |
217 |
Q |
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| T |
8944498 |
atgaatatttcaaatgttacatgacgtcgttttaatgttactcacattcatccttttgtcaaacttagtttcttagcatctttttcctgagacgaaattg |
8944597 |
T |
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| Q |
218 |
ataataagtagtaaaatataaggatgtaaacgaaacgtgataacatgaaagtttgacagaaatatagatatgagtaatgtttcaccgagtaagaggcgta |
317 |
Q |
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| T |
8944598 |
atactaagtggttaaatataaggatgtaagcgaaacgtgttaacgataaagtttgacagaaagatagatatgatcaatgtttcaccgagtaagagacgta |
8944697 |
T |
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| Q |
318 |
tttgaaatattcataatctcatggaccatttgaaagcgcaataaattacatggataaatttggtggtttcctttgattatatctaattgagtttatgttt |
417 |
Q |
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| T |
8944698 |
tttaaaatattcataatctcatggaccatttgaaagcgcaataaattacatggatacatttggtggtttcctttcattgtatctaattgagtttatgttt |
8944797 |
T |
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| Q |
418 |
ttgaagatgcagaaatgaaaagtctaactagaatctgtttgcattgaagttgaggttttctttcatctctagttccatcaatttcaatttttccgtctct |
517 |
Q |
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| T |
8944798 |
ttgacgatgcagaaatgaagagtctaactagaatctgtttgcattgaagttgaggttttctttcatctctagttccatcaatttcaatttttccgtctct |
8944897 |
T |
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| Q |
518 |
atttttaatctgtgattcaacttttttcattagtggtaaactatattcatctc |
570 |
Q |
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| T |
8944898 |
atttttaatctgtgattcaacttttttcattagtggtaaacgatattcatctc |
8944950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 405 - 563
Target Start/End: Complemental strand, 8964430 - 8964272
Alignment:
| Q |
405 |
tgagtttatgtttttgaagatgcagaaatgaaaagtctaactagaatctgtttgcattgaagttgaggttttctttcatctctagttccatcaatttcaa |
504 |
Q |
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| T |
8964430 |
tgagtttatgttattgaagatgcagagatgaagagcttgaatggaatgtatttgcaaagaaaatatggttttctttcatctacagtttcatcaatttcat |
8964331 |
T |
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| Q |
505 |
tttttccgtctctatttttaatctgtgattcaacttttttcattagtggtaaactatat |
563 |
Q |
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| T |
8964330 |
ttgtactttctctatttttaatttgtaattcaacttttccaattagtggtaaacgatat |
8964272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 477 - 563
Target Start/End: Original strand, 21685541 - 21685627
Alignment:
| Q |
477 |
ctttcatctctagttccatcaatttcaatttttccgtctctatttttaatctgtgattcaacttttttcattagtggtaaactatat |
563 |
Q |
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| T |
21685541 |
ctttcatctctagttccatcaatttcactttttctgtctattttcttaatatataattcaacttttttaattggtggtaaacgatat |
21685627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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