View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21627_low_7 (Length: 569)
Name: NF21627_low_7
Description: NF21627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21627_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 432; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 18 - 537
Target Start/End: Original strand, 2016893 - 2017413
Alignment:
| Q |
18 |
aacattactacaaatctcttactctcacgtttctgtcaacaggtacaactcccttttcattccttggtaagattttttatcctttcttatttgttttctt |
117 |
Q |
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| T |
2016893 |
aacattactacaaatctcttactctcacgtttctgtcaacaggtacaactcccttttcattccttggtaagattttgtatcctttcttatttgttttctt |
2016992 |
T |
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| Q |
118 |
cttcatttgttactcaaattttcctctggttaacgtttttattttgttgtaggcttgtagcaattacattcggaagattttgcatgcttttcctggaact |
217 |
Q |
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| T |
2016993 |
cttcatttgttactcaaattttcctctggttaacgtttttattttgttgtaggcttgtagcaattacattcggaagattttgcatgcttttcctgaaact |
2017092 |
T |
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| Q |
218 |
ggaagcttgacatggtattttctccaagtcttcttatgtgtaatgttttaacatgcattccatgtatgaattttattgactaaaatgttgtcttgttaca |
317 |
Q |
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| T |
2017093 |
ggaagcttgacatggtattttctccaagtcttcttatatgtaatgttttaacatgtattccatgaatatattttattgattaaaatgttgtcttgttaca |
2017192 |
T |
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| Q |
318 |
gctcagtacatggtttagaagaaaaatatagnnnnnnnaggatgttttctctctttaggagaagaaactcaaaattttga-tttttaacacatctttttc |
416 |
Q |
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| T |
2017193 |
gatgagtgcatggtttagaagaaaaatatagtttttttaggatgttttctctctttaggagaagaaacacaaaattttgattttttaacacatctttttc |
2017292 |
T |
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| Q |
417 |
aataaaagagggaaggcctgatttgacccttcataattttcatgcgaaccaattttttcatgaaaaataaaacccaaaatagtctctgacatttgcacat |
516 |
Q |
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| T |
2017293 |
aataaaagagggaaggcctgatttgacccttcataattttcctgcgaaccaattttgtcatgagaaataaaacccaaaatagtctctgacatttgcacat |
2017392 |
T |
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| Q |
517 |
ggtcacaaatttgtccctcaa |
537 |
Q |
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| T |
2017393 |
ggtcacaaatttgtccctcaa |
2017413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 244 - 281
Target Start/End: Original strand, 2018807 - 2018844
Alignment:
| Q |
244 |
agtcttcttatgtgtaatgttttaacatgcattccatg |
281 |
Q |
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| T |
2018807 |
agtcttattctgtgtaatgttttaacatgcattccatg |
2018844 |
T |
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