View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21627_low_8 (Length: 451)
Name: NF21627_low_8
Description: NF21627
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21627_low_8 |
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| [»] scaffold1445 (1 HSPs) |
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Alignment Details
Target: scaffold1445 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: scaffold1445
Description:
Target: scaffold1445; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 15 - 438
Target Start/End: Complemental strand, 1543 - 1120
Alignment:
| Q |
15 |
aataaatcaaactataaagtactgacacgacacaacactgacacgtcaacacgagttataatttgaaaatacgatataattgaatgtgatcacgttgtca |
114 |
Q |
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| T |
1543 |
aataaatcaaactattaagtactgacacgacacaacactgacacgtcaacacgagttataatttgaaaatacgatataattgaatgtgatcacgttgtca |
1444 |
T |
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| Q |
115 |
gtatcatgccatgtcagacactaacactaacacatgttgtcttcaatcataagtatgagtgctacataaaaatcaaataatgaattagaattaccattac |
214 |
Q |
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| T |
1443 |
gtatcatgccatgtcagacactaacactaacacatgttgtcttcaatcataagtatgagtgctacataaaaatcaaataatgaattagaattaccattac |
1344 |
T |
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| Q |
215 |
cacggaattgacattggtaagacctttgcctttcccagaagccaagaacaactcattccaactcggctgataacttcgatgaaaactccgaatttccgaa |
314 |
Q |
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| T |
1343 |
cacggaattgacattggtaagacctttgcctttcccagaagccaagaacaactcattccaactcggctgataacttcgatgaaaactctgaatttccgaa |
1244 |
T |
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| Q |
315 |
ggacgaaagaaccaaacaactctgatcatctttctacgaccattctcaaacatcttgacaagcataccaatagaagtttcaacatgatcagtgtggtaaa |
414 |
Q |
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| T |
1243 |
ggacgaaagaaccaaacaactctgatcatctttctacgaccattctcaaacatcttgacaagcataccaatagaagtttcaacatgatcagtgtggtaaa |
1144 |
T |
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| Q |
415 |
aataaacacaatcatgtagaaaat |
438 |
Q |
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| T |
1143 |
aataaacacaatcatgtagaaaat |
1120 |
T |
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Target: chr2 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 233 - 438
Target Start/End: Complemental strand, 26372374 - 26372169
Alignment:
| Q |
233 |
aagacctttgcctttcccagaagccaagaacaactcattccaactcggctgataacttcgatgaaaactccgaatttccgaaggacgaaagaaccaaaca |
332 |
Q |
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|||||| || || ||||||||||||||||||| ||||||||||| |||| ||||| || ||||||| | |||||||| ||||||||||| ||||||||| |
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| T |
26372374 |
aagaccctttcccttcccagaagccaagaacagctcattccaacaaggcttataacctctatgaaaattacgaatttcagaaggacgaaaaaaccaaaca |
26372275 |
T |
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| Q |
333 |
actctgatcatctttctacgaccattctcaaacatcttgacaagcataccaatagaagtttcaacatgatcagtgtggtaaaaataaacacaatcatgta |
432 |
Q |
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| T |
26372274 |
actcttatcatctttgcacgactagtctcgtacatcttgacaagcttaccaatggaagtttcaacatgatcggtgtggtaaaaataaacagaatcataca |
26372175 |
T |
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| Q |
433 |
gaaaat |
438 |
Q |
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|||||| |
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| T |
26372174 |
gaaaat |
26372169 |
T |
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