View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21628_high_14 (Length: 280)

Name: NF21628_high_14
Description: NF21628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21628_high_14
NF21628_high_14
[»] chr8 (2 HSPs)
chr8 (122-265)||(4478033-4478176)
chr8 (18-58)||(4477967-4478007)
[»] chr1 (2 HSPs)
chr1 (194-257)||(19652284-19652346)
chr1 (183-216)||(33579323-33579356)
[»] chr3 (1 HSPs)
chr3 (194-236)||(35989157-35989198)
[»] chr6 (1 HSPs)
chr6 (194-226)||(26289611-26289643)
[»] chr4 (1 HSPs)
chr4 (183-255)||(21443054-21443125)
[»] chr2 (1 HSPs)
chr2 (95-171)||(11950190-11950266)


Alignment Details
Target: chr8 (Bit Score: 104; Significance: 7e-52; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 122 - 265
Target Start/End: Original strand, 4478033 - 4478176
Alignment:
Q  122 ggaggggagggaaaggaaagactttcaaggattggaaatatataagaaatggtaaattcttttataattatgtagattaaatttgaagaattcatatcaa 221  Q
    |||||||||| ||||||||||||||| ||| |||||||| ||| | |||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4478033 ggaggggaggaaaaggaaagactttcgagggttggaaatgtatgaaaaatggtaaattcttttataattacgtagattaaatttgaagaattcatatcaa 4478132  T
Q  222 tcctttcaaaactctttaaaacttttctccaatacatggaaagt 265  Q
    || |||||||||||||||||||||||||||||| || |||||||    
T  4478133 tcatttcaaaactctttaaaacttttctccaatgcacggaaagt 4478176  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 4477967 - 4478007
Alignment:
Q  18 aacgtgggtttgaggttactcttatgtgcattgatgacttt 58  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  4477967 aacgtgggtttgaggttactcttatgtgcattgatgacttt 4478007  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 257
Target Start/End: Original strand, 19652284 - 19652346
Alignment:
Q  194 tagattaaatttgaagaattcatatcaatcctttcaaaactctttaaaacttttctccaataca 257  Q
    |||||||||| |||||||||||||| ||||| |||| ||| | | |||||||||||||||||||    
T  19652284 tagattaaatatgaagaattcatataaatcc-ttcagaacccctcaaaacttttctccaataca 19652346  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 216
Target Start/End: Complemental strand, 33579356 - 33579323
Alignment:
Q  183 ttataattatgtagattaaatttgaagaattcat 216  Q
    |||||||||| |||||||||||||||||||||||    
T  33579356 ttataattatttagattaaatttgaagaattcat 33579323  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 194 - 236
Target Start/End: Complemental strand, 35989198 - 35989157
Alignment:
Q  194 tagattaaatttgaagaattcatatcaatcctttcaaaactct 236  Q
    ||||||||||||||||||||||||| ||||| |||||||||||    
T  35989198 tagattaaatttgaagaattcatataaatcc-ttcaaaactct 35989157  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 226
Target Start/End: Complemental strand, 26289643 - 26289611
Alignment:
Q  194 tagattaaatttgaagaattcatatcaatcctt 226  Q
    ||||||||||||||||||||||||| |||||||    
T  26289643 tagattaaatttgaagaattcatataaatcctt 26289611  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 255
Target Start/End: Complemental strand, 21443125 - 21443054
Alignment:
Q  183 ttataattatgtagattaaatttgaagaattcatatcaatcctttcaaaactctttaaaacttttctccaata 255  Q
    ||||||| || || |||||||||||||||||||||| || |||||| |||||||  |||||| ||||| ||||    
T  21443125 ttataataatatatattaaatttgaagaattcatat-aaacctttctaaactctccaaaactcttctctaata 21443054  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 171
Target Start/End: Complemental strand, 11950266 - 11950190
Alignment:
Q  95 ctaagactttgtttgggtatttggagaggaggggagggaaaggaaagactttcaaggattggaaatatataagaaat 171  Q
    ||||| ||||||||||   ||||||| ||||||||||| |||| | ||||||  ||| |||||||||||| ||||||    
T  11950266 ctaaggctttgtttggaagtttggaggggaggggaggggaagggaggactttggagggttggaaatatatgagaaat 11950190  T

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