View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21628_high_4 (Length: 453)
Name: NF21628_high_4
Description: NF21628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21628_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 118; Significance: 5e-60; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 161 - 435
Target Start/End: Complemental strand, 22918058 - 22917802
Alignment:
| Q |
161 |
catgcactatgtggcttaaagtaacaagttccaatacatttaactcaaaacaatggcctaggcaacaatgcgcgggttagacaaattaagaaaagagttc |
260 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||| ||||||||||||| |
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| T |
22918058 |
catgcactatgtggcttaaagtaacaagttccaatacatttaacgcaaaacaatggtctag-------------------acaaatcaagaaaagagttc |
22917978 |
T |
|
| Q |
261 |
aaccaaaataatcaactaagtgaaatctggatgcacaaaagtatctgattgaagtttaacccattaagaacaaaagagtaactaactatcagcatgcatc |
360 |
Q |
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||||| || |||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||| |||| |||||||| |
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| T |
22917977 |
aaccacaacaatcaactaactgaaatttggatgcacaaaagtatttgattgaagtttaacccattaagaacaaacaagcaactaaccatcaacatgcatc |
22917878 |
T |
|
| Q |
361 |
aattgttatccatc-aaagagttcgatatacacacagttccagcataaaattacacatagttccagcatagactac |
435 |
Q |
| |
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||||||| | |||| |||||||| ||| |||||| ||||||| |||||||||||||| ||||||| |||| ||||| |
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| T |
22917877 |
aattgttgttcatcaaaagagtttgatctacacaaagttccaacataaaattacacacagttccatcataaactac |
22917802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 22918488 - 22918385
Alignment:
| Q |
18 |
acatttcaatgcttgcatacatggtatcctatagaattcctaaagaagtttaaaataaaaagcccacgcaat-aaaaacaaacaagttgatgacagcatg |
116 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| || | ||||| |||||||||||||||||||| | |||| |
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| T |
22918488 |
acatttcaatacttgcatacatggtatcctatagaattcctaaagaagtttaaaatgaaaatcctaggcaataaaaaacaaacaagttgatgataacatg |
22918389 |
T |
|
| Q |
117 |
aagg |
120 |
Q |
| |
|
|||| |
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| T |
22918388 |
aagg |
22918385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 87; Significance: 2e-41; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 139 - 267
Target Start/End: Original strand, 9266143 - 9266264
Alignment:
| Q |
139 |
agataagatgacgacacagtttcatgcactatgtggcttaaagtaacaagttccaatacatttaactcaaaacaatggcctaggcaacaatgcgcgggtt |
238 |
Q |
| |
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||||||||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
9266143 |
agataagatgatgacacaactgcatgcactatgtggcttaaagtaacaagttccaatacatttaactcaaaacaatggcctaggcaaca-------ggtt |
9266235 |
T |
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| Q |
239 |
agacaaattaagaaaagagttcaaccaaa |
267 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
9266236 |
agacaaattaagaaaagagttcaaccaaa |
9266264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 139 - 227
Target Start/End: Original strand, 9266042 - 9266130
Alignment:
| Q |
139 |
agataagatgacgacacagtttcatgcactatgtggcttaaagtaacaagttccaatacatttaactcaaaacaatggcctaggcaaca |
227 |
Q |
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||||||||||||||| ||| | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9266042 |
agataagatgacgacgcagctgcacgcactatgtggcttaaagtaacaagttccaatacatttaactcaaaacaatggcctaggcaaca |
9266130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 340 - 447
Target Start/End: Original strand, 9266263 - 9266374
Alignment:
| Q |
340 |
aactaactatcagcatgcatcaattgttatccatcaaa----gagttcgatatacacacagttccagcataaaattacacatagttccagcatagactac |
435 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||| ||||| ||| ||||||||||||||||| ||||||||||| ||||||| |||| ||||| |
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| T |
9266263 |
aactaactatcagcatacatcagttgttatccatcaaattaagagtttgatctacacacagttccagcagaaaattacacacagttccaacataaactac |
9266362 |
T |
|
| Q |
436 |
gctcagttccag |
447 |
Q |
| |
|
| ||||||||| |
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|
| T |
9266363 |
acacagttccag |
9266374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 120
Target Start/End: Original strand, 9265646 - 9265751
Alignment:
| Q |
18 |
acatttcaatgcttgcatacatggtat--cctatagaattcctaaagaa-gtttaaaataaaaagcccacgcaat-aaaaacaaacaagttgatgacagc |
113 |
Q |
| |
|
|||||||||| |||| ||||||||||| |||||||||||||||||||| ||||||||| |||||||||| |||| ||||||||||||| |||||||| | |
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| T |
9265646 |
acatttcaatacttgtatacatggtatatcctatagaattcctaaagaaagtttaaaatgaaaagcccacacaataaaaaacaaacaag-tgatgacacc |
9265744 |
T |
|
| Q |
114 |
atgaagg |
120 |
Q |
| |
|
||||||| |
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|
| T |
9265745 |
atgaagg |
9265751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 33 - 118
Target Start/End: Original strand, 2550573 - 2550659
Alignment:
| Q |
33 |
catacatggtatcctatagaattcctaaagaagtttaaaataaaaagcccacgcaataaaaa-caaacaagttgatgacagcatgaa |
118 |
Q |
| |
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|||||| ||||||||||| ||||||||| |||||||||||| ||||| | |||||||||||| ||||||||||||||||| |||||| |
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| T |
2550573 |
catacaaggtatcctatacaattcctaatgaagtttaaaatgaaaagtctacgcaataaaaatcaaacaagttgatgacaccatgaa |
2550659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 7710636 - 7710535
Alignment:
| Q |
18 |
acatttcaatgcttgcatacatggtatcctatagaattcctaaagaagtttaaaataaaaagcccacgcaataaaaa-caaacaagttgatgacagcatg |
116 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||| |||||||||| ||||||||||| ||||| |||||||||||||| | |||||||||||||| |||| |
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| T |
7710636 |
acatttcaatacttgcatacaaggtatcctatacaattcctaaaaaagtttaaaatgaaaaggccacgcaataaaaatctgacaagttgatgacaccatg |
7710537 |
T |
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| Q |
117 |
aa |
118 |
Q |
| |
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|| |
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|
| T |
7710536 |
aa |
7710535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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