View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21628_high_5 (Length: 453)
Name: NF21628_high_5
Description: NF21628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21628_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 18 - 442
Target Start/End: Original strand, 38378278 - 38378703
Alignment:
| Q |
18 |
ctaacacaagcaaaatctagcgaacatgcatatgagtgcgaaactagattgcaaaaaagtgtggtgaaagaacgttcgcaagcacaaaatcaagaatgag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
38378278 |
ctaacacaagcaaaatctagcgaacatgtatatgagtgcgaaattagattgcaaaaaagtgtggtgtaagaacgttcgcaagcacaaaaccaagaatgag |
38378377 |
T |
|
| Q |
118 |
tccaaacgaactcaaattcaaatttaaaacccgacaagtgaacctggccgtcaacatgaaacaaaaccacaagaagaaataatggtcattttgagccaaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38378378 |
tccaaacgaactcaaattcaaatttaaaacccgacaagtgaacctggccgtcaacatgaaacaaaaccacaagaagaaataatggtcattttgagccaaa |
38378477 |
T |
|
| Q |
218 |
caattcgaaattcaaccaacctttaaaggatcttaaa-acaacctaagagtgttggaccatatcttgtggatcacaagaccaaaaccaccacacatgatt |
316 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
38378478 |
caatccgaaattcaaccaacctttaaaggatcttaaacacaacctatgagtgttggaccatatcttgtggatcacaagatcaaaaccaccacacatgatt |
38378577 |
T |
|
| Q |
317 |
ctaaaacccataatcacatcacatgatctcaaatcttgaagtggaaagacaaaattgtaactcaaattgaatataatgagctagggatcaaacacatcaa |
416 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
38378578 |
ctcaaacccataatcacatcacatgatctcaaatcttgaagtggaaagacaaaattgtaactcaaattgaatacaatgagctagggatcaaacacatcaa |
38378677 |
T |
|
| Q |
417 |
aaaccaagaaacccatacacgattca |
442 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
38378678 |
aaaccaagaaacccatacacgattca |
38378703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University