View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21628_high_6 (Length: 441)
Name: NF21628_high_6
Description: NF21628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21628_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 34555928 - 34556209
Alignment:
| Q |
1 |
aaattgaactcatcaactgagtagaatctaccaccagattccatttgtttatgtaagatgcttacaaatcctacatgagggaggtaagtgtagttgagag |
100 |
Q |
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| T |
34555928 |
aaattgaactcatcaactgagtagaatctaccaccagattccatttgtttatgtaagatgcttacaaatcctacatgagggaggtaagtgtagttgagag |
34556027 |
T |
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| Q |
101 |
tgaaatcagaagaagaaaagaaccctagaaaatggatatgctgacatgaaacagagaagtaaactagacatcctctgaagagtggtctgaagctcagaac |
200 |
Q |
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| T |
34556028 |
tgaaatcagaagaagaaaagaaccctagaaaatggatatgctgacatgaaacagagaagtaaactagacatcctctgaagagtggtctgaagctcagaac |
34556127 |
T |
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| Q |
201 |
cacatctcaataaagttagtcagtcaggcccggagatcaacacttacaaaagattcatgttttagcatggaacccacatgct |
282 |
Q |
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| T |
34556128 |
cacatctcaataaagttagtcagtcaggcccggagatcaacacttacaaaagattcatgttttagcatggaacccacatgct |
34556209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 329 - 412
Target Start/End: Original strand, 34556257 - 34556340
Alignment:
| Q |
329 |
tattttcaaaattcattcatagggaaatgagaagaatccctagaaagggaacatggaaaagaaccaatcaccatgccctccagt |
412 |
Q |
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| T |
34556257 |
tattttcaaaattcattcatagggaaatgagaagaatccctataaagggaacatggaaaagaaccaatcaccatgcgctccagt |
34556340 |
T |
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