View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21628_low_10 (Length: 356)
Name: NF21628_low_10
Description: NF21628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21628_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 19 - 338
Target Start/End: Original strand, 52385649 - 52385968
Alignment:
| Q |
19 |
cacagatgtcctgaggttggactctgatcactaaatttggttactctaagttgaaggtgtatttcaaaaaggtaaagtgcggagttataactgttgatgg |
118 |
Q |
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| T |
52385649 |
cacacatgccctgaggttggactctgatcactaaatttggttactctaagttgaaggtgtatttcaaaaaggtaaagtgcggagttataactgttgatgg |
52385748 |
T |
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| Q |
119 |
aaaaaataacaattgagattgtgataaatatatttacatgcatgaaggttatttagctgtaatctgatctgagttttcatttaacagttattatttgtat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52385749 |
aaaaaataacaattgagattgtgataaatatatttacatgcatgaaggttatttagctgtaatctgatctgagttttcatttaacagttattatttgtat |
52385848 |
T |
|
| Q |
219 |
tttacttttttaagtacacctttcagtttagaagggtcaacccatttgataattcttgcttgtggttagattgttcaagtcaggaattaaaattttggtt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52385849 |
tttacttttttaagtacacctttcagtttagaagggtcaacccatttgataattcttgcttgtggttagattgttcaagtcaggaattaaaattttggtt |
52385948 |
T |
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| Q |
319 |
cattttatgttggcatgtgg |
338 |
Q |
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|||||||||||||||||||| |
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| T |
52385949 |
cattttatgttggcatgtgg |
52385968 |
T |
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