View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21628_low_12 (Length: 322)
Name: NF21628_low_12
Description: NF21628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21628_low_12 |
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| [»] scaffold0735 (1 HSPs) |
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Alignment Details
Target: scaffold0735 (Bit Score: 176; Significance: 8e-95; HSPs: 1)
Name: scaffold0735
Description:
Target: scaffold0735; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 114 - 306
Target Start/End: Original strand, 1142 - 1336
Alignment:
| Q |
114 |
gccgccagttcttcactaccacccgcttcgaatctacaccgccacaacacaactcaaccaagatccttcattaccctctctcgctatgcattttcgcgca |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1142 |
gccgccagttcttcactaccacccgcttcgaatctacaccgccacaacacaacacaaccaagatccttcattaccctctctcgctatgcattttcgcgca |
1241 |
T |
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| Q |
214 |
ttcattctattccctcctttgaacgccttctttcgaatctctctaatcctaa--tctctccttaactacttttttatattatcttttttctcttc |
306 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1242 |
ttcattctattccctcctttgaacgccttcttttgaatctctctaatcctaatctctctccttaactacttttttatattatcttttttctcttc |
1336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 176; Significance: 8e-95; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 114 - 306
Target Start/End: Original strand, 42888189 - 42888383
Alignment:
| Q |
114 |
gccgccagttcttcactaccacccgcttcgaatctacaccgccacaacacaactcaaccaagatccttcattaccctctctcgctatgcattttcgcgca |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42888189 |
gccgccagttcttcactaccacccgcttcgaatctacaccgccacaacacaacacaaccaagatccttcattaccctctctcgctatgcattttcgcgca |
42888288 |
T |
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| Q |
214 |
ttcattctattccctcctttgaacgccttctttcgaatctctctaatcctaa--tctctccttaactacttttttatattatcttttttctcttc |
306 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
42888289 |
ttcattctattccctcctttgaacgccttcttttgaatctctctaatcctaatctctctccttaactacttttttatattatcttttttctcttc |
42888383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 50148992 - 50148960
Alignment:
| Q |
3 |
attgtcacaaaagttatcaaaaattggttgttc |
35 |
Q |
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| T |
50148992 |
attgtcacaaaagttgtcaaaaattggttgttc |
50148960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 35
Target Start/End: Original strand, 17097827 - 17097859
Alignment:
| Q |
3 |
attgtcacaaaagttatcaaaaattggttgttc |
35 |
Q |
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||||||||||||||||||||||| ||||||||| |
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| T |
17097827 |
attgtcacaaaagttatcaaaaaatggttgttc |
17097859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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