View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21628_low_13 (Length: 311)
Name: NF21628_low_13
Description: NF21628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21628_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 12 - 296
Target Start/End: Original strand, 21658292 - 21658576
Alignment:
| Q |
12 |
atgagataactcatcatactcagtgatcacctccctttgataatttactggggatatacctaagatataataatttgattaattaaaatatttatattat |
111 |
Q |
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| T |
21658292 |
atgagataactcatcatactcagtgatcacctccctttgataatttactggggctatacctaagatataataatttgattaattaaaatatttatattat |
21658391 |
T |
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| Q |
112 |
cttcttttcaaaagaaaaattcgaaagaagtaaatcgctattaacataagtgacattaatgattattttacaacgatgttttagagcatttaaaaaacag |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
21658392 |
attcttttcaaaagaaaaattcgaaagaagtaaatcgctattaacataaatgacattaatgattattttacaacgatgttttagggcatttaaaaaacag |
21658491 |
T |
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| Q |
212 |
gcgatgcaatcaaaatcccggcgagagccatgacctagagagagaaggtatacttaccaggcaaaaaattaaagatgagtttggt |
296 |
Q |
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| T |
21658492 |
gcgatgcaatcaaaatcccagcgagggccgtgacctagagagagaaggtatacttaccaggcaaaaaattaaagatgagtttggt |
21658576 |
T |
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