View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21628_low_15 (Length: 265)
Name: NF21628_low_15
Description: NF21628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21628_low_15 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0074 (1 HSPs) |
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| [»] scaffold0007 (1 HSPs) |
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| [»] scaffold0264 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 47635324 - 47635060
Alignment:
| Q |
1 |
gctgctgaaggcgctggtgatggtgaaggagcaaggtttcgataaaaagggtataattcatatctaacattacagctaggaaacaaaactctcccacctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47635324 |
gctgctgaaggcgctggtgatggtgaaggagcaaggtttcgataaaaagggtataattcatatctaacattacagctaggaaacaaaactctcccacctt |
47635225 |
T |
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| Q |
101 |
gctttccatcacaacactgtggaagagctccaatagcagcactaagacacgttctgcaatcttgctgtgataaatcctctgtacactgagccatacaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47635224 |
gctttccatcacaacactgtggaagagctccaatagcatcactaagacacgttctgcaatcttgctgtgataaatcctctgtacactgagccatacaata |
47635125 |
T |
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| Q |
201 |
aagtgtctgaaaaccagagattctagcttcctttgttgcgtatttcttagcaccaacagaagaat |
265 |
Q |
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| T |
47635124 |
aagtgtctgaaaaccagagatgctagcttcctttgttgcgtatttcttagcaccaacagaagaat |
47635060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 31 - 214
Target Start/End: Original strand, 9674581 - 9674764
Alignment:
| Q |
31 |
gcaaggtttcgataaaaagggtataattcatatctaacattacagctaggaaacaaaactctcccaccttgctttccatcacaacactgtggaagagctc |
130 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9674581 |
gcaaggtttcgataaaaagggtataattcatatctaacattacagctaggaaacaaaactctcccaccttgctttccatcacaacactgtggaagagctc |
9674680 |
T |
|
| Q |
131 |
caatagcagcactaagacacgttctgcaatcttgctgtgataaatcctctgtacactgagccatacaataaagtgtctgaaaac |
214 |
Q |
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| T |
9674681 |
caatagcatcactaagacacgttctgcaatcttgctgtgataaatcctctgtacactgagccatacaataaagtgtctgaaaac |
9674764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 42 - 116
Target Start/End: Original strand, 20086142 - 20086216
Alignment:
| Q |
42 |
ataaaaagggtataattcatatctaacattacagctaggaaacaaaactctcccaccttgctttccatcacaaca |
116 |
Q |
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| T |
20086142 |
ataaaaaggatataattcatacctaacattacagctaggaaaaagaactctcccacccacctttccatcacaaca |
20086216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 161
Target Start/End: Complemental strand, 24385233 - 24385115
Alignment:
| Q |
42 |
ataaaaagggtataattcatatctaacattacagctaggaaacaaaactctcccaccttgctttccatcacaacactgtggaagagctccaatagcagca |
141 |
Q |
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||||||||| ||| |||||| |||| |||||||||||||| |||||||| ||| ||||||||||||||||| ||||||||| | |||||||| | |
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| T |
24385233 |
ataaaaaggaaatagttcatacctaatgttacagctaggaaaaggaactctcc-accctgctttccatcacaacatagtggaagagattcaatagcacta |
24385135 |
T |
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| Q |
142 |
ctaagacacgttctgcaatc |
161 |
Q |
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| T |
24385134 |
ttgagacaggttctgcaatc |
24385115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 42 - 116
Target Start/End: Complemental strand, 22205021 - 22204947
Alignment:
| Q |
42 |
ataaaaagggtataattcatatctaacattacagctaggaaacaaaactctcccaccttgctttccatcacaaca |
116 |
Q |
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||||||||| |||| |||||| |||| ||||||||||||||| | ||||||| |||| ||||||||||||||| |
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| T |
22205021 |
ataaaaaggatatagttcatacctaatattacagctaggaaaaacaactctcgcacccacctttccatcacaaca |
22204947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 21972026 - 21972082
Alignment:
| Q |
42 |
ataaaaagggtataattcatatctaacattacagctaggaaacaaaactctcccacc |
98 |
Q |
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|||||| || ||||||||||| |||||||||||||||||| | | || ||||||||| |
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| T |
21972026 |
ataaaatggatataattcatacctaacattacagctaggataaagaaatctcccacc |
21972082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 42 - 111
Target Start/End: Complemental strand, 47850 - 47781
Alignment:
| Q |
42 |
ataaaaagggtataattcatatctaacattacagctaggaaacaaaactctcccaccttgctttccatca |
111 |
Q |
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||||||||| |||| |||||| |||||||||||||||||||| ||||| ||||||| |||||||||||| |
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| T |
47850 |
ataaaaaggatatagttcatacctaacattacagctaggaaaaaaaaccatcccaccctgctttccatca |
47781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 42 - 114
Target Start/End: Complemental strand, 5371 - 5299
Alignment:
| Q |
42 |
ataaaaagggtataattcatatctaacattacagctaggaaacaaaactctcccaccttgctttccatcacaa |
114 |
Q |
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||||||||| |||| |||||| |||| ||||||||||||||| | |||||||||||| | ||||||||||||| |
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| T |
5371 |
ataaaaaggatatagttcatacctaatattacagctaggaaaaacaactctcccaccctcctttccatcacaa |
5299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0264 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0264
Description:
Target: scaffold0264; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 16091 - 16147
Alignment:
| Q |
42 |
ataaaaagggtataattcatatctaacattacagctaggaaacaaaactctcccacc |
98 |
Q |
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||||||||| |||| |||||| ||||||||||||||||| || | || ||||||||| |
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| T |
16091 |
ataaaaaggatatagttcatacctaacattacagctaggcaaaagaaatctcccacc |
16147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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