View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21628_low_16 (Length: 215)
Name: NF21628_low_16
Description: NF21628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21628_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 3e-96; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 3e-96
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 6855241 - 6855064
Alignment:
| Q |
18 |
cacagagtacaagagatcaaagttacctagaagcagaaggattgtaaaatttgcatatggtggtgttttatctggtggtgctgttcgagaaagagtcatt |
117 |
Q |
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| T |
6855241 |
cacagagtacaagagatcaaagttacctagaagcagaaggattgtaaaatttgcatatggtggtgttttatctggtggtgctgttcgagaaagagtcatt |
6855142 |
T |
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| Q |
118 |
cgagctttcttggttgaaaagcaaaagatagtcaagaatgttttgaagatccaaaagacaaaggaaaaacaagctttg |
195 |
Q |
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| T |
6855141 |
cgagctttcttggttgaaaagcaaaagatagtcaagaatgttttgaagatccaaaagacaaaggaaaaacaagctttg |
6855064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 69 - 195
Target Start/End: Original strand, 6823024 - 6823150
Alignment:
| Q |
69 |
tgcatatggtggtgttttatctggtggtgctgttcgagaaagagtcattcgagctttcttggttgaaaagcaaaagatagtcaagaatgttttgaagatc |
168 |
Q |
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| T |
6823024 |
tgcatattgtagtattttatgtggaggcgctgttagagaaagaatcattcgagctttcttggttgaagagaaaaagatagtcaagaatgttctgaagatc |
6823123 |
T |
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| Q |
169 |
caaaagacaaaggaaaaacaagctttg |
195 |
Q |
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| T |
6823124 |
cgaaagagaaaggaaaaacaagctttg |
6823150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 121 - 195
Target Start/End: Original strand, 24245690 - 24245764
Alignment:
| Q |
121 |
gctttcttggttgaaaagcaaaagatagtcaagaatgttttgaagatccaaaagacaaaggaaaaacaagctttg |
195 |
Q |
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| T |
24245690 |
gctttcttggttgaagagcaaaagatcgtcaagaaagtcttgaagatccaaaagacaaaggaaaagcaagctttg |
24245764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 110
Target Start/End: Original strand, 24244979 - 24245067
Alignment:
| Q |
22 |
gagtacaagagatcaaagttacctagaagcagaaggattgtaaaatttgcatatggtggtgttttatctggtggtgctgttcgagaaag |
110 |
Q |
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| T |
24244979 |
gagtacaagagatctaggttacctagaaacaggaggactgtgaatcgtgcctatggtggagttttatctggaggtgctgttagagaaag |
24245067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 121 - 191
Target Start/End: Complemental strand, 2418914 - 2418844
Alignment:
| Q |
121 |
gctttcttggttgaaaagcaaaagatagtcaagaatgttttgaagatccaaaagacaaaggaaaaacaagc |
191 |
Q |
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| T |
2418914 |
gctttccttgttgaagagcaaaaaatagttaagaaagttttgaagatccagaaaacaaaagaaaagcaagc |
2418844 |
T |
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