View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21628_low_2 (Length: 570)

Name: NF21628_low_2
Description: NF21628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21628_low_2
NF21628_low_2
[»] chr2 (10 HSPs)
chr2 (191-560)||(35275428-35275797)
chr2 (251-555)||(35289545-35289849)
chr2 (227-514)||(35280241-35280528)
chr2 (251-555)||(35307343-35307647)
chr2 (251-555)||(35322344-35322648)
chr2 (3-149)||(35275807-35275953)
chr2 (232-514)||(35311730-35312014)
chr2 (1-46)||(35281820-35281865)
chr2 (1-46)||(35290665-35290710)
chr2 (171-200)||(42223029-42223058)
[»] chr5 (2 HSPs)
chr5 (96-148)||(18232084-18232138)
chr5 (171-208)||(17190497-17190534)
[»] chr7 (1 HSPs)
chr7 (96-149)||(9689222-9689275)
[»] chr4 (1 HSPs)
chr4 (96-149)||(13555599-13555652)
[»] chr1 (1 HSPs)
chr1 (119-148)||(44228295-44228324)


Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 191 - 560
Target Start/End: Complemental strand, 35275797 - 35275428
Alignment:
Q  191 atattaaccctatatataaacaatatgtttatcctataaccatgtttcaattaatttatatagcttggaggaccctcatgggcagtaccacttggaagaa 290  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35275797 atattaaccctatatataaacaatatgtgtatcctataaccatgtttcaattaatttatatagcttggaggaccctcatgggcagtaccacttggaagaa 35275698  T
Q  291 gagatgcaagaacagcaagtcaaagtgcagcaaatagccaaattccaggaccatcttctgacctatccacactcactaccatgtttagaaacaaaggtct 390  Q
    ||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||  ||||||  ||||||| ||||    
T  35275697 gagatgcaagaacagcaagtcaaagtgcagcaaatagccaaatccctggaccatcttctgacctatcgacactcactagaatgtttcaaaacaaaagtct 35275598  T
Q  391 aacattaaatgaccttacagtcctatctggtgcacacaccatagggcaaactgagtgtcaatttttcagaaatcgcatacacaatgaagccaacattgac 490  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35275597 aacattaaatgaccttacagtcctatctggtgcacacaccatagggcaaactgagtgtcaatttttcagaaatcgcatacacaatgaagccaacattgac 35275498  T
Q  491 agaaacttggctaccttaagaaaaagaaattgccctacctctggtggtgacaccaatttagcaccctttg 560  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35275497 agaaacttggctaccttaagaaaaagaaattgccctacctctggtggtgacaccaatttagcaccctttg 35275428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 251 - 555
Target Start/End: Complemental strand, 35289849 - 35289545
Alignment:
Q  251 tagcttggaggaccctcatgggcagtaccacttggaagaagagatgcaagaacagcaagtcaaagtgcagcaaatagccaaattccaggaccatcttctg 350  Q
    ||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35289849 tagcttggaggtccttcatgggtagtaccacttggaagaagagatgcaagaacagcaagtcaaagtgcagcaaatagccaaattccaggaccatcttctg 35289750  T
Q  351 acctatccacactcactaccatgtttagaaacaaaggtctaacattaaatgaccttacagtcctatctggtgcacacaccatagggcaaactgagtgtca 450  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||| | || |||||    
T  35289749 acctatccacactcactaccatgtttagaaacaaaggtctaacattaaatgaccttactgtcctttctggtgcacacaccataggtcaagcagaatgtca 35289650  T
Q  451 atttttcagaaatcgcatacacaatgaagccaacattgacagaaacttggctaccttaagaaaaagaaattgccctacctctggtggtgacaccaattta 550  Q
    ||||||||||| ||| ||| |||| ||| |||||||||||| |||||| || ||||||||||||  |||||| ||||| |||||||||||||  |||||     
T  35289649 atttttcagaactcgtatatacaacgaaaccaacattgacacaaactttgcaaccttaagaaaatcaaattgtcctacttctggtggtgacataaatttg 35289550  T
Q  551 gcacc 555  Q
    |||||    
T  35289549 gcacc 35289545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 227 - 514
Target Start/End: Complemental strand, 35280528 - 35280241
Alignment:
Q  227 taaccatgtttcaattaatttatatagcttggaggaccctcatgggcagtaccacttggaagaagagatgcaagaacagcaagtcaaagtgcagcaaata 326  Q
    ||||| ||||||||||||| ||||||||||||||| || ||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  35280528 taaccttgtttcaattaatctatatagcttggaggtccttcatggatagtaccacttggaagaagagatgcaagaacagcaagtcaaagtgcagcaaaca 35280429  T
Q  327 gccaaattccaggaccatcttctgacctatccacactcactaccatgtttagaaacaaaggtctaacattaaatgaccttacagtcctatctggtgcaca 426  Q
     |||||| ||   |||| ||||||||||||||||||||||||  ||||||  ||||||||||||||||||||  |||||||||||||| |||||||||||    
T  35280428 cccaaatcccttcaccagcttctgacctatccacactcactaaaatgtttcaaaacaaaggtctaacattaagagaccttacagtcctttctggtgcaca 35280329  T
Q  427 caccatagggcaaactgagtgtcaatttttcagaaatcgcatacacaatgaagccaacattgacagaaacttggctaccttaagaaaa 514  Q
    ||||||||| ||| | || |||||||||||| ||||||||||| |||||||| ||||||| |||| |||||| || ||||||||||||    
T  35280328 caccataggccaagcagaatgtcaatttttccgaaatcgcatatacaatgaaaccaacatcgacacaaactttgcaaccttaagaaaa 35280241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 251 - 555
Target Start/End: Complemental strand, 35307647 - 35307343
Alignment:
Q  251 tagcttggaggaccctcatgggcagtaccacttggaagaagagatgcaagaacagcaagtcaaagtgcagcaaatagccaaattccaggaccatcttctg 350  Q
    ||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||   ||||| |||||    
T  35307647 tagcttggaggaccaacatgggtagtaccacttggaagaagagatgcaagaacagcaagccaaagtgcagcaaatagtcaaatcccttcaccattttctg 35307548  T
Q  351 acctatccacactcactaccatgtttagaaacaaaggtctaacattaaatgaccttacagtcctatctggtgcacacaccatagggcaaactgagtgtca 450  Q
    |||| ||||| |||||||| ||||||  |  ||| ||||||||   || |||||| ||||| || |||||||||||||||||||| |||   ||||| ||    
T  35307547 acctttccactctcactacaatgttttcagccaagggtctaactgcaagtgacctcacagtactttctggtgcacacaccataggccaaggagagtgcca 35307448  T
Q  451 atttttcagaaatcgcatacacaatgaagccaacattgacagaaacttggctaccttaagaaaaagaaattgccctacctctggtggtgacaccaattta 550  Q
    ||||||||||||||||||| |||||||| |||||||||||| |||||| || |||||||| |||  |||||| |||   |||||||||||||||||||||    
T  35307447 atttttcagaaatcgcatatacaatgaaaccaacattgacacaaactttgcaaccttaaggaaatcaaattgtcctctttctggtggtgacaccaattta 35307348  T
Q  551 gcacc 555  Q
    |||||    
T  35307347 gcacc 35307343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 251 - 555
Target Start/End: Complemental strand, 35322648 - 35322344
Alignment:
Q  251 tagcttggaggaccctcatgggcagtaccacttggaagaagagatgcaagaacagcaagtcaaagtgcagcaaatagccaaattccaggaccatcttctg 350  Q
    ||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||   ||||| |||||    
T  35322648 tagcttggaggaccaacatgggtagtaccacttggaagaagagatgcaagaacagcaagccaaagtgcagcaaatagtcaaatcccttcaccattttctg 35322549  T
Q  351 acctatccacactcactaccatgtttagaaacaaaggtctaacattaaatgaccttacagtcctatctggtgcacacaccatagggcaaactgagtgtca 450  Q
    |||| ||||| ||||| |  ||||||| | |||| ||||||||   || |||||| ||||| || |||||||||||||||||||| |||   ||||| ||    
T  35322548 acctttccactctcaccaaaatgtttacagacaagggtctaactgcaagtgacctcacagtactttctggtgcacacaccataggccaaggagagtgcca 35322449  T
Q  451 atttttcagaaatcgcatacacaatgaagccaacattgacagaaacttggctaccttaagaaaaagaaattgccctacctctggtggtgacaccaattta 550  Q
    ||||||||||||||||||| |||||||| |||||||||||| |||||| || |||||||| |||  |||||| |||   |||||||||||||||||||||    
T  35322448 atttttcagaaatcgcatatacaatgaaaccaacattgacacaaactttgcaaccttaaggaaattaaattgtcctctttctggtggtgacaccaattta 35322349  T
Q  551 gcacc 555  Q
    |||||    
T  35322348 gcacc 35322344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 3 - 149
Target Start/End: Complemental strand, 35275953 - 35275807
Alignment:
Q  3 gtctcttgtgctgatattcttgcacttgcaactagagatggaatagcgttggtaagtcatatatatgtgtcctataagacatgaaatataaactagggtt 102  Q
    |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  35275953 gtctcttgtgctgatattcttgcacttgcaactagagatggaattgcattggtaagtcatatatgtgtgtcctataagacatgaaatataaactagggtt 35275854  T
Q  103 aatatatgtttaacctctataatattaatggtttctggtttacccct 149  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  35275853 aatatatgtttaacctctataatattaatggtttctggtttacccct 35275807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 232 - 514
Target Start/End: Complemental strand, 35312014 - 35311730
Alignment:
Q  232 atgtttcaattaatttatat--agcttggaggaccctcatgggcagtaccacttggaagaagagatgcaagaacagcaagtcaaagtgcagcaaatagcc 329  Q
    ||||||||||||||| || |  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  35312014 atgtttcaattaattaatttgtagcttggaggaccctcatggacagtaccacttggaagaagagatgcaagaacagcaaatcaaagtgcagcaaatagcc 35311915  T
Q  330 aaattccaggaccatcttctgacctatccacactcactaccatgtttagaaacaaaggtctaacattaaatgaccttacagtcctatctggtgcacacac 429  Q
    |||| ||  ||||||| | | ||||| ||| ||||||||| ||||||  |  ||| ||||||||   || ||| || ||||| || ||||||||||||||    
T  35311914 aaatccctagaccatcctttaacctaaccagactcactacaatgtttttagccaagggtctaactgcaagtgatctcacagtactttctggtgcacacac 35311815  T
Q  430 catagggcaaactgagtgtcaatttttcagaaatcgcatacacaatgaagccaacattgacagaaacttggctaccttaagaaaa 514  Q
    |||||| |||   ||||||| ||| ||||||| ||||||| |||||||| |||||||||||| |||||| || ||||||||||||    
T  35311814 cataggccaaggagagtgtcgattgttcagaactcgcatatacaatgaaaccaacattgacacaaacttcgcaaccttaagaaaa 35311730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 35281865 - 35281820
Alignment:
Q  1 ctgtctcttgtgctgatattcttgcacttgcaactagagatggaat 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  35281865 ctgtctcttgtgctgatattcttgcacttgcaactagagatggaat 35281820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 35290710 - 35290665
Alignment:
Q  1 ctgtctcttgtgctgatattcttgcacttgcaactagagatggaat 46  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  35290710 ctgtctcttgtgctgatattcttgcacttgcaactagagatggaat 35290665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 200
Target Start/End: Complemental strand, 42223058 - 42223029
Alignment:
Q  171 aatattataggggtaaacatatattaaccc 200  Q
    ||||||||||||||||||||||||||||||    
T  42223058 aatattataggggtaaacatatattaaccc 42223029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 148
Target Start/End: Complemental strand, 18232138 - 18232084
Alignment:
Q  96 tagggttaatatatgtttaacc--tctataatattaatggtttctggtttacccc 148  Q
    ||||||||||||||||||| ||  ||| |||||||| ||||||||||||||||||    
T  18232138 tagggttaatatatgtttaccccctctgtaatattagtggtttctggtttacccc 18232084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 17190534 - 17190497
Alignment:
Q  171 aatattataggggtaaacatatattaaccctatatata 208  Q
    ||||||||||||||||||||||||||| | ||||||||    
T  17190534 aatattataggggtaaacatatattaaacatatatata 17190497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 149
Target Start/End: Original strand, 9689222 - 9689275
Alignment:
Q  96 tagggttaatatatgtttaacctctataatattaatggtttctggtttacccct 149  Q
    ||||||||||||||||||| ||||| ||||||||  | |||| |||||||||||    
T  9689222 tagggttaatatatgtttaccctctgtaatattagcgatttccggtttacccct 9689275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 149
Target Start/End: Original strand, 13555599 - 13555652
Alignment:
Q  96 tagggttaatatatgtttaacctctataatattaatggtttctggtttacccct 149  Q
    ||||||||||||||||||| ||||| ||||||||  | |||| |||||||||||    
T  13555599 tagggttaatatatgtttaccctctgtaatattagcgatttccggtttacccct 13555652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 119 - 148
Target Start/End: Original strand, 44228295 - 44228324
Alignment:
Q  119 ctataatattaatggtttctggtttacccc 148  Q
    ||||||||||||||||||||||||||||||    
T  44228295 ctataatattaatggtttctggtttacccc 44228324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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