View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21628_low_3 (Length: 487)
Name: NF21628_low_3
Description: NF21628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21628_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 448; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 18 - 473
Target Start/End: Complemental strand, 45101363 - 45100908
Alignment:
| Q |
18 |
ctttacacaaacatcaaaggaacttatgatataaaaagccctcctatgcattttgcttgtagtgactctgtcccttgcactaacataacactctcagaaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45101363 |
ctttacacaaacatcaaaggaacttatgatataaaaagccctcctatgcattttgcttgtagtgactctgtcccttgcactaacataacactctcagaaa |
45101264 |
T |
|
| Q |
118 |
ttgagcttcttccttctcaaggagatattgtccatgatcctttttgttggaatgcttatggagatttggagacattaactattccaccagtttcttgttt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
45101263 |
ttgagcttcttccttctcaaggagatattgtccatgatcctttttgttggaatgcttatggagatttagagacattaactattccaccagtttcttgttt |
45101164 |
T |
|
| Q |
218 |
gctagaaggcattcctcagtctttgttagactatgatataggtcattgctgacccaaataggttctttataaatttaagcaaaagtgtgtccatgtatac |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45101163 |
gctagaaggcattcctcagtctttgttagactatgatataggtcattgctgacccaaataggttctttataaatttaagcaaaagtgtgtccatgtatat |
45101064 |
T |
|
| Q |
318 |
atatgattgttaggtattgttaaggaatatagcatttgattttgaatcttctgttgtgattgattaggagttgtgttttttatgctcctcctgaatgtaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45101063 |
atatgattgttaggtattgttaaggaatatagcatttgattttgaatcttctgttgtgattgattaggagttgtgttttttatgctcctcctgaatgtaa |
45100964 |
T |
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| Q |
418 |
actgtgttgcgtgaatgccaaggtttaaaaatgcacttgcttgtatcttcgagttt |
473 |
Q |
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| T |
45100963 |
actgtgttgcgtgaatgccaaggtttaaaaatgcacttgcttgtatcttcgagttt |
45100908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 98; Significance: 5e-48; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 19 - 272
Target Start/End: Original strand, 38662432 - 38662685
Alignment:
| Q |
19 |
tttacacaaacatcaaaggaacttatgatataaaaagccctcctatgcattttgcttgtagtgactctgtcccttgcactaacataacactctcagaaat |
118 |
Q |
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||||||||| ||| || |||||||||||||||| | |||||||||||||||||| || |||||||| |||||||||| ||| | || |||||||| || |
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| T |
38662432 |
tttacacaagcataaagggaacttatgatataagacaccctcctatgcattttgcatgcagtgactcaatcccttgcaccaacttgactctctcagatat |
38662531 |
T |
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| Q |
119 |
tgagcttcttccttctcaaggagatattgtccatgatcctttttgttggaatgcttatggagatttggagacattaactattccaccagtttcttgtttg |
218 |
Q |
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| T |
38662532 |
tgagcttcttccttctcaaggagatatgttgaatgatcctttttgttggaatgcttatggaaattcagagacattaaccattcctccagtattttgcttg |
38662631 |
T |
|
| Q |
219 |
ctagaaggcattcctcagtctttgttagactatgatataggtcattgctgaccc |
272 |
Q |
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| || || |||||||||||| | || | ||||||| | ||||||||||||| |
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| T |
38662632 |
ttggatggtattcctcagtctattccagccaatgatattgatcattgctgaccc |
38662685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 57 - 179
Target Start/End: Complemental strand, 12316018 - 12315896
Alignment:
| Q |
57 |
cctcctatgcattttgcttgtagtgactctgtcccttgcactaacataacactctcagaaattgagcttcttccttctcaaggagatattgtccatgatc |
156 |
Q |
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|||||||| |||||||||||||||||| |||| ||||||| |||||||||||||| || ||||| ||| | |||| | |||| || | || |||| | |
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| T |
12316018 |
cctcctatacattttgcttgtagtgacactgttgcttgcacaaacataacactctctgagattgaacttttgccttatgaaggtgaattagttgatgacc |
12315919 |
T |
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| Q |
157 |
ctttttgttggaatgcttatgga |
179 |
Q |
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||||||||||||||||||||||| |
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| T |
12315918 |
ctttttgttggaatgcttatgga |
12315896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 58 - 178
Target Start/End: Original strand, 38834922 - 38835042
Alignment:
| Q |
58 |
ctcctatgcattttgcttgtagtgactctgtcccttgcactaacataacactctcagaaattgagcttcttccttctcaaggagatattg-tccatgatc |
156 |
Q |
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||||||| |||||||||||||||||| |||| |||| || |||||||||||||| || |||||||| | || | | |||| || |||| | |||| | |
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| T |
38834922 |
ctcctattcattttgcttgtagtgacactgttgcttgtacaaacataacactctctgaggttgagcttttgccatttgaaggtga-attgttggatgacc |
38835020 |
T |
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| Q |
157 |
ctttttgttggaatgcttatgg |
178 |
Q |
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|||||||||||||||||||||| |
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| T |
38835021 |
ctttttgttggaatgcttatgg |
38835042 |
T |
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