View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21628_low_7 (Length: 435)

Name: NF21628_low_7
Description: NF21628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21628_low_7
NF21628_low_7
[»] chr1 (11 HSPs)
chr1 (19-248)||(35579394-35579624)
chr1 (241-382)||(35577246-35577387)
chr1 (240-382)||(33402866-33403008)
chr1 (240-382)||(48025753-48025894)
chr1 (240-382)||(25817613-25817755)
chr1 (242-382)||(3368236-3368376)
chr1 (243-358)||(16315151-16315266)
chr1 (243-382)||(23941635-23941774)
chr1 (243-341)||(30704348-30704446)
chr1 (243-382)||(12063560-12063699)
chr1 (307-345)||(18426402-18426440)
[»] chr4 (16 HSPs)
chr4 (242-382)||(24972606-24972746)
chr4 (240-382)||(23283376-23283518)
chr4 (240-382)||(36499121-36499263)
chr4 (242-382)||(45246753-45246893)
chr4 (240-370)||(55523940-55524070)
chr4 (240-382)||(12586400-12586535)
chr4 (243-371)||(22182152-22182280)
chr4 (243-342)||(156886-156985)
chr4 (243-367)||(43210007-43210129)
chr4 (243-382)||(50008797-50008936)
chr4 (243-358)||(33990762-33990877)
chr4 (243-382)||(50336192-50336331)
chr4 (256-340)||(6599384-6599469)
chr4 (243-372)||(41418911-41419040)
chr4 (243-358)||(1938580-1938695)
chr4 (243-367)||(12656515-12656646)
[»] chr6 (4 HSPs)
chr6 (240-382)||(31522345-31522487)
chr6 (240-382)||(32275543-32275685)
chr6 (243-358)||(13543678-13543792)
chr6 (265-382)||(4321530-4321639)
[»] chr3 (13 HSPs)
chr3 (240-382)||(35995301-35995443)
chr3 (240-382)||(7666689-7666831)
chr3 (240-382)||(19866947-19867090)
chr3 (240-382)||(35063131-35063272)
chr3 (240-382)||(34086559-34086703)
chr3 (270-382)||(39649705-39649817)
chr3 (243-367)||(14443735-14443859)
chr3 (243-367)||(54335654-54335778)
chr3 (243-382)||(30933795-30933934)
chr3 (243-340)||(30528497-30528594)
chr3 (243-382)||(11916930-11917069)
chr3 (243-382)||(20518049-20518188)
chr3 (243-358)||(53767224-53767339)
[»] chr5 (13 HSPs)
chr5 (240-382)||(34017399-34017541)
chr5 (240-382)||(30491515-30491658)
chr5 (240-380)||(38739551-38739690)
chr5 (240-382)||(763105-763246)
chr5 (243-382)||(5504933-5505068)
chr5 (241-338)||(33143948-33144045)
chr5 (243-382)||(32910585-32910724)
chr5 (243-367)||(29195842-29195966)
chr5 (242-328)||(16109318-16109403)
chr5 (257-372)||(15235049-15235165)
chr5 (243-344)||(20887705-20887806)
chr5 (253-329)||(8736462-8736538)
chr5 (243-325)||(35050308-35050390)
[»] chr2 (7 HSPs)
chr2 (240-382)||(8277183-8277325)
chr2 (240-382)||(11573848-11573997)
chr2 (243-372)||(20927515-20927644)
chr2 (252-382)||(31133337-31133467)
chr2 (240-372)||(35000441-35000573)
chr2 (241-371)||(22787786-22787916)
chr2 (243-358)||(9829368-9829483)
[»] scaffold1063 (1 HSPs)
scaffold1063 (241-382)||(1641-1782)
[»] scaffold0037 (1 HSPs)
scaffold0037 (242-382)||(38109-38249)
[»] chr8 (10 HSPs)
chr8 (252-382)||(34276418-34276548)
chr8 (243-354)||(24626061-24626172)
chr8 (242-382)||(2807157-2807296)
chr8 (292-372)||(20532101-20532181)
chr8 (272-372)||(32075054-32075154)
chr8 (253-372)||(13868188-13868307)
chr8 (240-282)||(33228332-33228374)
chr8 (284-369)||(14189823-14189908)
chr8 (243-297)||(20534367-20534421)
chr8 (284-372)||(27188188-27188276)
[»] chr7 (10 HSPs)
chr7 (240-382)||(2369658-2369800)
chr7 (240-369)||(4452395-4452524)
chr7 (243-382)||(23941343-23941482)
chr7 (243-382)||(44222009-44222148)
chr7 (243-372)||(4278602-4278732)
chr7 (243-382)||(11356339-11356478)
chr7 (240-329)||(4452757-4452846)
chr7 (253-341)||(31730919-31731006)
chr7 (243-313)||(13070509-13070579)
chr7 (240-278)||(10526860-10526898)
[»] scaffold0599 (1 HSPs)
scaffold0599 (243-382)||(8681-8820)
[»] scaffold1050 (1 HSPs)
scaffold1050 (243-345)||(2061-2163)


Alignment Details
Target: chr1 (Bit Score: 161; Significance: 1e-85; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 19 - 248
Target Start/End: Complemental strand, 35579624 - 35579394
Alignment:
Q  19 atactcgataataacatgtttgtcaaaaacaaatatccgtttgatatttgtctgaacttcaaacaaccttttaaacaacaaatctggagcaataagttgg 118  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  35579624 atactcgataataacatgtatgtcaaaagcaaatatccgtttgataattgtctgaacttcaaacgaccttttaaacaacaaatcgggagcaataagttgg 35579525  T
Q  119 tactca--aaattgaattgaacagaaatcttattgggaagacctgcacaaatcaattttatggccaaaaagttagttcattctgatgataaagcaagctc 216  Q
    | ||||  |||||||| |||||| ||||||| ||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  35579524 tgctcatgaaattgaaatgaacaaaaatctt-ttgagaagaccttcacaaatcaattttatggccaaaaaattagttcattctgatgataaagcaagctc 35579426  T
Q  217 tttgtgtgcatcaaacaccggaaattttttct 248  Q
    |||||| |||||||||||||||||| ||||||    
T  35579425 tttgtgcgcatcaaacaccggaaatattttct 35579394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 241 - 382
Target Start/End: Complemental strand, 35577387 - 35577246
Alignment:
Q  241 ttttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttcta 340  Q
    |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  35577387 ttttttcttttcgtccacctccaaaaaccccaaaagtgcgaaatttttggtaaaaatactcattccaaatcattgcaaatcgttaggaaacaagtttcta 35577288  T
Q  341 cgctcgtcgagcatcaaagaacaggtaatgtaccgtcaaaac 382  Q
    ||||| || |||||||||||||||||||||||||||||||||    
T  35577287 cgctcatcaagcatcaaagaacaggtaatgtaccgtcaaaac 35577246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 240 - 382
Target Start/End: Complemental strand, 33403008 - 33402866
Alignment:
Q  240 attttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttct 339  Q
    |||||||||||  ||||||||| ||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||| || ||||||||||||||    
T  33403008 attttttctttcgctccacctctaaaaaccccaaaagtgcgaaattttgggtaaaaatcttcattccaaatcattgcaaatcttccggaaacaagtttct 33402909  T
Q  340 acgctcgtcgagcatcaaagaacaggtaatgtaccgtcaaaac 382  Q
    |||||| |  |||||||||||||||||||||||||||||||||    
T  33402908 acgctcattaagcatcaaagaacaggtaatgtaccgtcaaaac 33402866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 240 - 382
Target Start/End: Original strand, 48025753 - 48025894
Alignment:
Q  240 attttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttct 339  Q
    ||||||||||| |||||||||||||||  ||||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||| |||||||||||||    
T  48025753 attttttctttccctccacctccaaaac-cccaaaagtgcgaaattttgggtaaaaatcttcattccaaatcattgcaaatcatcaagaaacaagtttct 48025851  T
Q  340 acgctcgtcgagcatcaaagaacaggtaatgtaccgtcaaaac 382  Q
    | |||| || |||||||||||||||||||||||| ||||||||    
T  48025852 atgctcatcaagcatcaaagaacaggtaatgtactgtcaaaac 48025894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 240 - 382
Target Start/End: Original strand, 25817613 - 25817755
Alignment:
Q  240 attttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttct 339  Q
    ||||||||||| |||||||||||||||| || ||||||| ||| |||| ||| ||||| ||| |||||||||||||||||||||||  || |||||||||    
T  25817613 attttttctttccctccacctccaaaaacccaaaaagtgtgaatttttgggtcaaaatcttcgttccaaatcattgcaaatcgtcataaagcaagtttct 25817712  T
Q  340 acgctcgtcgagcatcaaagaacaggtaatgtaccgtcaaaac 382  Q
     |||||||| ||||||| |||||||||||||||||||||||||    
T  25817713 gcgctcgtcaagcatcatagaacaggtaatgtaccgtcaaaac 25817755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 242 - 382
Target Start/End: Original strand, 3368236 - 3368376
Alignment:
Q  242 tttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttctac 341  Q
    ||||||||| |||||||||||||||| || ||||||||||   ||| ||| ||||| |||||||  |||||||||||||| ||||||| |||||||||||    
T  3368236 tttttctttccctccacctccaaaaacccaaaaagtgcgattatttgggtcaaaatcttcattcataatcattgcaaatcatcaggaagcaagtttctac 3368335  T
Q  342 gctcgtcgagcatcaaagaacaggtaatgtaccgtcaaaac 382  Q
     ||  || ||||||||| | || |||||||| | |||||||    
T  3368336 acttatcaagcatcaaacatcaagtaatgtatcatcaaaac 3368376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 243 - 358
Target Start/End: Complemental strand, 16315266 - 16315151
Alignment:
Q  243 ttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttctacg 342  Q
    |||||||| ||||||||| || ||| || ||||||||||  |||| | | ||||| ||||| ||||||||||||||||||||||||| ||||||||||||    
T  16315266 ttttctttccctccaccttcacaaacccaaaaagtgcgattttttggatcaaaatcttcatcccaaatcattgcaaatcgtcaggaagcaagtttctacg 16315167  T
Q  343 ctcgtcgagcatcaaa 358  Q
    ||| || |||| ||||    
T  16315166 ctcatcaagcaccaaa 16315151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 243 - 382
Target Start/End: Original strand, 23941635 - 23941774
Alignment:
Q  243 ttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttctacg 342  Q
    |||||||| ||||||||| |||||| || |||||||| |  |||| ||| ||||   |||| ||||||||||||||||||||||||| ||||||||||||    
T  23941635 ttttctttccctccaccttcaaaaacccaaaaagtgcaattttttgggtcaaaaccctcatcccaaatcattgcaaatcgtcaggaagcaagtttctacg 23941734  T
Q  343 ctcgtcgagcatcaaagaacaggtaatgtaccgtcaaaac 382  Q
     || || |||| |||| | |||||| |||| | |||||||    
T  23941735 ttcatcaagcaccaaatatcaggtattgtatcatcaaaac 23941774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 243 - 341
Target Start/End: Complemental strand, 30704446 - 30704348
Alignment:
Q  243 ttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttctac 341  Q
    |||||||| ||||||||| |||||| || ||||||||||  |||| ||| |||||  ||||  |||||||||||||||||||||||| |||||||||||    
T  30704446 ttttctttccctccaccttcaaaaacccaaaaagtgcgactttttgggtcaaaattctcatctcaaatcattgcaaatcgtcaggaagcaagtttctac 30704348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 243 - 382
Target Start/End: Original strand, 12063560 - 12063699
Alignment:
Q  243 ttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttctacg 342  Q
    |||||||| ||||  ||| |||||| || ||||||| ||  |||| ||| |||||  |||| ||||||||||||||||||||||||| |||||||||||     
T  12063560 ttttctttccctcttccttcaaaaacccaaaaagtgtgattttttgggtcaaaatcctcatcccaaatcattgcaaatcgtcaggaagcaagtttctaca 12063659  T
Q  343 ctcgtcgagcatcaaagaacaggtaatgtaccgtcaaaac 382  Q
    ||| || ||||  ||| | |||||| |||| | |||||||    
T  12063660 ctcatcaagcactaaatatcaggtattgtatcatcaaaac 12063699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 307 - 345
Target Start/End: Complemental strand, 18426440 - 18426402
Alignment:
Q  307 aaatcattgcaaatcgtcaggaaacaagtttctacgctc 345  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  18426440 aaatcattgcaaatcgtcaggaagcaagtttctacgctc 18426402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 113; Significance: 4e-57; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 242 - 382
Target Start/End: Original strand, 24972606 - 24972746
Alignment:
Q  242 tttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttctac 341  Q
    ||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  24972606 tttttctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcttcattccaaatcattgcaaatcgtcaggaaacaagtttctac 24972705  T
Q  342 gctcgtcgagcatcaaagaacaggtaatgtaccgtcaaaac 382  Q
    |||| || ||||||||| |||||||||||||||||||||||    
T  24972706 gctcatcaagcatcaaataacaggtaatgtaccgtcaaaac 24972746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 240 - 382
Target Start/End: Original strand, 23283376 - 23283518
Alignment:
Q  240 attttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttct 339  Q
    ||||||||||| |||||||||||||||| ||||||||||| ||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  23283376 attttttctttccctccacctccaaaaaccccaaaagtgcaaaattttgggtaaaaatcttcattctaaatcattgcaaatcgtcaggaaacaagtttct 23283475  T
Q  340 acgctcgtcgagcatcaaagaacaggtaatgtaccgtcaaaac 382  Q
    |||||| || |||||||||||||||||||||||||||||||||    
T  23283476 acgctcatcaagcatcaaagaacaggtaatgtaccgtcaaaac 23283518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 240 - 382
Target Start/End: Original strand, 36499121 - 36499263
Alignment:
Q  240 attttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttct 339  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  36499121 attttttctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcttcattccaaatcattgcaaatcgtcaggaaacaaatttct 36499220  T
Q  340 acgctcgtcgagcatcaaagaacaggtaatgtaccgtcaaaac 382  Q
    |||||| || |||||||||||||||||||| ||||||||||||    
T  36499221 acgctcatcaagcatcaaagaacaggtaatttaccgtcaaaac 36499263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 242 - 382
Target Start/End: Complemental strand, 45246893 - 45246753
Alignment:
Q  242 tttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttctac 341  Q
    |||| |||| ||||||||||||||||  | ||||||| |||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||| ||    
T  45246893 ttttcctttccctccacctccaaaaactctaaaagtgtgaaattttgggtaaaaatcttcattccaaatcattgcaaatcgtcaagaaacaagtttccac 45246794  T
Q  342 gctcgtcgagcatcaaagaacaggtaatgtaccgtcaaaac 382  Q
    |||| || |||||||||||||||||||||||||||||||||    
T  45246793 gctcatcaagcatcaaagaacaggtaatgtaccgtcaaaac 45246753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 240 - 370
Target Start/End: Original strand, 55523940 - 55524070
Alignment:
Q  240 attttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttct 339  Q
    ||||||||||| ||||||||| |||||| ||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  55523940 attttttctttccctccacctgcaaaaaccccaaaagtgcgaaattttgggtaaaaatcttcattccaaatcattgtaaatcgtcaggaaacaagtttct 55524039  T
Q  340 acgctcgtcgagcatcaaagaacaggtaatg 370  Q
    |||||| || |||||||||||| | ||||||    
T  55524040 acgctcatcaagcatcaaagaatatgtaatg 55524070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 240 - 382
Target Start/End: Original strand, 12586400 - 12586535
Alignment:
Q  240 attttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttct 339  Q
    ||||||||||| |||||||||||||||| ||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  12586400 attttttctttccctccacctccaaaaaccccaaaagtgcaaaattttgggtaaaaatcttcattccaaatcattgcaaatcgtcaggaaataagtttct 12586499  T
Q  340 acgctcgtcgagcatcaaagaacaggtaatgtaccgtcaaaac 382  Q
    |||||       ||||||| |||||||||||||||||||||||    
T  12586500 acgct-------catcaaacaacaggtaatgtaccgtcaaaac 12586535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 243 - 371
Target Start/End: Complemental strand, 22182280 - 22182152
Alignment:
Q  243 ttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttctacg 342  Q
    |||||||| |||||||||||||||| || |||||||| |  |||| ||| ||||| ||||||||||||||||||||||||| | ||| ||||||||||||    
T  22182280 ttttctttccctccacctccaaaaacccaaaaagtgcaattttttaggtcaaaatcttcattccaaatcattgcaaatcgttaagaagcaagtttctacg 22182181  T
Q  343 ctcgtcgagcatcaaagaacaggtaatgt 371  Q
    ||| || ||||||||| | ||||||||||    
T  22182180 ctcatcaagcatcaaatatcaggtaatgt 22182152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 243 - 342
Target Start/End: Complemental strand, 156985 - 156886
Alignment:
Q  243 ttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttctacg 342  Q
    |||||||| ||||||||| |||||| || ||||||||||| |||| ||| |||||  |||| ||||||||||||||||||||||||| ||||||||||||    
T  156985 ttttctttccctccaccttcaaaaacccaaaaagtgcgaatttttgggtcaaaatcctcatcccaaatcattgcaaatcgtcaggaagcaagtttctacg 156886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 243 - 367
Target Start/End: Complemental strand, 43210129 - 43210007
Alignment:
Q  243 ttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttctacg 342  Q
    |||||||| ||||||||| ||||||  ||||||||||||  |||| ||| |||||  |||| ||||||||||||||||||||||||| ||||||||||||    
T  43210129 ttttctttccctccaccttcaaaaa--ccaaaagtgcgattttttgggtcaaaatcctcatcccaaatcattgcaaatcgtcaggaagcaagtttctacg 43210032  T
Q  343 ctcgtcgagcatcaaagaacaggta 367  Q
    ||| || |||| |||| | ||||||    
T  43210031 ctcatcaagcaccaaatatcaggta 43210007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 243 - 382
Target Start/End: Complemental strand, 50008936 - 50008797
Alignment:
Q  243 ttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttctacg 342  Q
    |||||||| |||| |||| |||||| |  ||||||||||  |||| ||| |||||  |||| ||||||||||||||||||||||||| ||||||||||||    
T  50008936 ttttctttccctcgaccttcaaaaaccaaaaaagtgcgattttttgggtcaaaatcctcatcccaaatcattgcaaatcgtcaggaagcaagtttctacg 50008837  T
Q  343 ctcgtcgagcatcaaagaacaggtaatgtaccgtcaaaac 382  Q
    ||| || |||| |||| | |||||| |||| | |||||||    
T  50008836 ctcatcaagcaccaaatatcaggtattgtatcatcaaaac 50008797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 243 - 358
Target Start/End: Original strand, 33990762 - 33990877
Alignment:
Q  243 ttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttctacg 342  Q
    |||||||| | ||||||| |||||| || ||||||||||  |||| ||| |||||  |||| ||||||||||||||||||||| ||| ||||||||||||    
T  33990762 ttttctttccttccaccttcaaaaacccaaaaagtgcgattttttgggtcaaaatcctcatcccaaatcattgcaaatcgtcatgaatcaagtttctacg 33990861  T
Q  343 ctcgtcgagcatcaaa 358  Q
    ||| || |||| ||||    
T  33990862 ctcatcaagcaccaaa 33990877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 243 - 382
Target Start/End: Complemental strand, 50336331 - 50336192
Alignment:
Q  243 ttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttctacg 342  Q
    |||||||| ||||||||| |||||| || ||||||||||  |||| ||| |||||  |||| ||||| ||||||||||||||| ||| |||||||||| |    
T  50336331 ttttctttccctccaccttcaaaaacccaaaaagtgcgattttttgggtcaaaatcctcatcccaaaccattgcaaatcgtcatgaagcaagtttctatg 50336232  T
Q  343 ctcgtcgagcatcaaagaacaggtaatgtaccgtcaaaac 382  Q
    ||| || |||| |||| | |||||| |||| | |||||||    
T  50336231 ctcatcaagcaccaaatatcaggtattgtatcatcaaaac 50336192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 256 - 340
Target Start/End: Complemental strand, 6599469 - 6599384
Alignment:
Q  256 cacctccaaaaatccc-aaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttcta 340  Q
    |||||||||||| ||| |||| |||||| |||||||||||||| |||||| ||||||||||||| |||||||||| || |||||||    
T  6599469 cacctccaaaaacccccaaaaatgcgaattttttggtaaaaatcttcatttcaaatcattgcaagtcgtcaggaagcaggtttcta 6599384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 243 - 372
Target Start/End: Original strand, 41418911 - 41419040
Alignment:
Q  243 ttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttctacg 342  Q
    |||||||| ||||||||| |||||| || ||||||||||  |||| ||| |||||  |||| |||||||||| |||||||| ||||  ||||||||||||    
T  41418911 ttttctttccctccaccttcaaaaacccaaaaagtgcgattttttgggtcaaaatcctcatcccaaatcattacaaatcgttaggacgcaagtttctacg 41419010  T
Q  343 ctcgtcgagcatcaaagaacaggtaatgta 372  Q
    ||| || |||| |||| | |||||| ||||    
T  41419011 ctcatcaagcaccaaatatcaggtattgta 41419040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 243 - 358
Target Start/End: Original strand, 1938580 - 1938695
Alignment:
Q  243 ttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttctacg 342  Q
    |||||||| ||||||||| |||||| || ||||||||||  |||| ||| |||||  |||| |||||||||||||||||||||| ||  ||||||||| |    
T  1938580 ttttctttccctccaccttcaaaaacccaaaaagtgcgattttttgggtcaaaatcctcatcccaaatcattgcaaatcgtcagaaagaaagtttctatg 1938679  T
Q  343 ctcgtcgagcatcaaa 358  Q
    ||| || |||| ||||    
T  1938680 ctcatcaagcaccaaa 1938695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 367
Target Start/End: Original strand, 12656515 - 12656646
Alignment:
Q  243 ttttcttttcctccacctccaaaaatcccaaaagtgcgaa-----attttt--ggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagt 335  Q
    |||||||| ||||||||| |||||| || |||||||||||     ||||||  ||| |||||  | || |||||||||||||||||||||| || |||||    
T  12656515 ttttctttccctccaccttcaaaaacccaaaaagtgcgaagtgcgattttttgggtcaaaatccttatcccaaatcattgcaaatcgtcagaaagcaagt 12656614  T
Q  336 ttctacgctcgtcgagcatcaaagaacaggta 367  Q
    |||||||||| || |||| |||| | ||||||    
T  12656615 ttctacgctcatcaagcaccaaatatcaggta 12656646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 111; Significance: 7e-56; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 240 - 382
Target Start/End: Complemental strand, 31522487 - 31522345
Alignment:
Q  240 attttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttct 339  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||||||||||||    
T  31522487 attttttctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcttaattccaaatcattgcaaatcgtcaggaaacaagtttct 31522388  T
Q  340 acgctcgtcgagcatcaaagaacaggtaatgtaccgtcaaaac 382  Q
    | |||| || |||||||||||||||||||||||||||||||||    
T  31522387 atgctcatcaagcatcaaagaacaggtaatgtaccgtcaaaac 31522345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 240 - 382
Target Start/End: Complemental strand, 32275685 - 32275543
Alignment:
Q  240 attttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttct 339  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||| |||||    
T  32275685 attttttcttttcctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcttcattccaaatctttgcaaatcgtcaggaaacaaatttct 32275586  T
Q  340 acgctcgtcgagcatcaaagaacaggtaatgtaccgtcaaaac 382  Q
    |||||| || |||||||||||||| ||||||||||||||||||    
T  32275585 acgctcatcaagcatcaaagaacatgtaatgtaccgtcaaaac 32275543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 243 - 358
Target Start/End: Complemental strand, 13543792 - 13543678
Alignment:
Q  243 ttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttctacg 342  Q
    |||||||| |||||||||||||||| || ||| |||| || |||||||| ||||| || |||||||||||||||||||||  ||||| |||| |||||||    
T  13543792 ttttctttccctccacctccaaaaacccaaaaggtgc-aattttttggtcaaaatctttattccaaatcattgcaaatcggtaggaagcaagcttctacg 13543694  T
Q  343 ctcgtcgagcatcaaa 358  Q
    ||| || |||||||||    
T  13543693 ctcatcaagcatcaaa 13543678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 265 - 382
Target Start/End: Complemental strand, 4321639 - 4321530
Alignment:
Q  265 aaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttctacgctcgtcgagcatcaaagaacag 364  Q
    ||||||||||||||| ||||||| ||||||||| ||||||||||||||||        |  ||  | |||||||||||||| || | |||||||||||||    
T  4321639 aaatcccaaaagtgcaaaattttgggtaaaaatcttcattccaaatcatt--------tttgggtaaaagtttctacgctcatcaatcatcaaagaacag 4321548  T
Q  365 gtaatgtaccgtcaaaac 382  Q
    |||||||||| |||||||    
T  4321547 gtaatgtaccatcaaaac 4321530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 103; Significance: 4e-51; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 240 - 382
Target Start/End: Original strand, 35995301 - 35995443
Alignment:
Q  240 attttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttct 339  Q
    ||||||||||| |||||||||||||||| |||||||||| ||| |||| ||||||| | || ||||||||||||||||||||||||||||||||||||||    
T  35995301 attttttctttccctccacctccaaaaaccccaaaagtgtgaatttttgggtaaaattttttattccaaatcattgcaaatcgtcaggaaacaagtttct 35995400  T
Q  340 acgctcgtcgagcatcaaagaacaggtaatgtaccgtcaaaac 382  Q
    |||||| || |||||||||||||||||||||||||||||||||    
T  35995401 acgctcatcaagcatcaaagaacaggtaatgtaccgtcaaaac 35995443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 240 - 382
Target Start/End: Complemental strand, 7666831 - 7666689
Alignment:
Q  240 attttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttct 339  Q
    ||||||||||| |||||||||||||||| || |||||||||||||||||||  ||||| ||||||||||||||||||||||| |||||||| ||||||||    
T  7666831 attttttctttccctccacctccaaaaacccaaaaagtgcgaaatttttgggtaaaatcttcattccaaatcattgcaaatcatcaggaaataagtttct 7666732  T
Q  340 acgctcgtcgagcatcaaagaacaggtaatgtaccgtcaaaac 382  Q
    |||||| || |||||||||||||| ||||||||||||||||||    
T  7666731 acgctcatcaagcatcaaagaacatgtaatgtaccgtcaaaac 7666689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 240 - 382
Target Start/End: Original strand, 19866947 - 19867090
Alignment:
Q  240 attttttcttttcctccacctccaaaaatc-ccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttc 338  Q
    ||||||||||| |||||||||||||||| | |||||||||||||||||| ||| ||||| ||||||||||||||||| |||| |||||||||||||||||    
T  19866947 attttttctttccctccacctccaaaaacctccaaaagtgcgaaattttgggtgaaaatcttcattccaaatcattgtaaattgtcaggaaacaagtttc 19867046  T
Q  339 tacgctcgtcgagcatcaaagaacaggtaatgtaccgtcaaaac 382  Q
    ||||||| || ||||||||||||||||||||||| |||||||||    
T  19867047 tacgctcatcaagcatcaaagaacaggtaatgtatcgtcaaaac 19867090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 240 - 382
Target Start/End: Original strand, 35063131 - 35063272
Alignment:
Q  240 attttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttct 339  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| || | |||||||||||||||||||||| |||||||||||||    
T  35063131 attttttctttccctccacctccaaaaatcccaaaagtgcgaaattttgggtaaaaatctttaatccaaatcattgcaaatcgtca-gaaacaagtttct 35063229  T
Q  340 acgctcgtcgagcatcaaagaacaggtaatgtaccgtcaaaac 382  Q
    |||||| || || ||||||||| ||||||||||  ||||||||    
T  35063230 acgctcatcaagtatcaaagaataggtaatgtattgtcaaaac 35063272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 240 - 382
Target Start/End: Complemental strand, 34086703 - 34086559
Alignment:
Q  240 attttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttct 339  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  34086703 attttttctttccctccacctccaaaaaccccaaaagtgcgaaattttgggtaaaaatcttcattccaaatcattgcaaatcgtcaggaaataagtttct 34086604  T
Q  340 ac--gctcgtcgagcatcaaagaacaggtaatgtaccgtcaaaac 382  Q
    ||  |||  |  ||||||||||||| | |||||||||||||||||    
T  34086603 acacgcttattaagcatcaaagaacggataatgtaccgtcaaaac 34086559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 270 - 382
Target Start/End: Complemental strand, 39649817 - 39649705
Alignment:
Q  270 ccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttctacgctcgtcgagcatcaaagaacaggtaat 369  Q
    |||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||| |||||||    
T  39649817 ccaaaagtgcaaaattttgggtaaaaatcttcattccaaatcattgcaaatcgtcaggaaacaaatttctacgctcatcaagcatcaaagaataggtaat 39649718  T
Q  370 gtaccgtcaaaac 382  Q
    ||||| |||||||    
T  39649717 gtaccatcaaaac 39649705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 243 - 367
Target Start/End: Complemental strand, 14443859 - 14443735
Alignment:
Q  243 ttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttctacg 342  Q
    |||||||| |||||||||||||||| || ||||||||||  |||| ||| |||||  |||| |||||||||||||||||||||||||  |||||||||||    
T  14443859 ttttctttccctccacctccaaaaacccaaaaagtgcgattttttcggtcaaaatcctcatcccaaatcattgcaaatcgtcaggaagtaagtttctacg 14443760  T
Q  343 ctcgtcgagcatcaaagaacaggta 367  Q
    ||| || |||| ||| || ||||||    
T  14443759 ctcatcaagcaccaatgatcaggta 14443735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 243 - 367
Target Start/End: Original strand, 54335654 - 54335778
Alignment:
Q  243 ttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttctacg 342  Q
    |||||||| ||||||||| |||||| || |||||||| || |||| ||| |||||  |||| ||||||||||||||||||||||||| ||||||||||||    
T  54335654 ttttctttccctccaccttcaaaaacccaaaaagtgcaaatttttgggtcaaaatcctcatcccaaatcattgcaaatcgtcaggaagcaagtttctacg 54335753  T
Q  343 ctcgtcgagcatcaaagaacaggta 367  Q
    ||| || |||| |||| | ||||||    
T  54335754 ctcatcaagcaccaaatatcaggta 54335778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 243 - 382
Target Start/End: Complemental strand, 30933934 - 30933795
Alignment:
Q  243 ttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttctacg 342  Q
    |||||||| ||||||||| |||||| || |||||||| |  |||| ||| |||||  |||| ||||||||||||||||||||||||| ||||||||||||    
T  30933934 ttttctttccctccaccttcaaaaacccaaaaagtgcaattttttgggtcaaaatcctcatcccaaatcattgcaaatcgtcaggaagcaagtttctacg 30933835  T
Q  343 ctcgtcgagcatcaaagaacaggtaatgtaccgtcaaaac 382  Q
    ||| || |||| |||| | |||||| |||| | |||||||    
T  30933834 ctcatcaagcaccaaatatcaggtattgtatcatcaaaac 30933795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 243 - 340
Target Start/End: Original strand, 30528497 - 30528594
Alignment:
Q  243 ttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttcta 340  Q
    |||||||| |||||||||||||||| || ||||||||||  |||| | | ||||| ||||||| ||||||||||||||||||||||| ||||||||||    
T  30528497 ttttctttccctccacctccaaaaacccaaaaagtgcgattttttggatcaaaatcttcattctaaatcattgcaaatcgtcaggaagcaagtttcta 30528594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 243 - 382
Target Start/End: Original strand, 11916930 - 11917069
Alignment:
Q  243 ttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttctacg 342  Q
    |||| ||| ||||||||| |||||| || ||||||||||| |||| ||| |||||  |||| ||||||| ||||||||||||||||| ||||||||||||    
T  11916930 ttttttttccctccaccttcaaaaacccaaaaagtgcgaatttttgggtcaaaatcctcatcccaaatctttgcaaatcgtcaggaagcaagtttctacg 11917029  T
Q  343 ctcgtcgagcatcaaagaacaggtaatgtaccgtcaaaac 382  Q
    ||| || ||||  ||| | |||||| |||| | |||||||    
T  11917030 ctcatcaagcacaaaatatcaggtattgtatcatcaaaac 11917069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 243 - 382
Target Start/End: Complemental strand, 20518188 - 20518049
Alignment:
Q  243 ttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttctacg 342  Q
    |||||||| ||||||||| |||||| || ||||||||||| |||| ||| |||||  |||| ||||| ||||| ||||||||| ||| ||||||||||||    
T  20518188 ttttctttccctccaccttcaaaaacccaaaaagtgcgaatttttgggtcaaaatcctcatcccaaagcattgtaaatcgtcatgaagcaagtttctacg 20518089  T
Q  343 ctcgtcgagcatcaaagaacaggtaatgtaccgtcaaaac 382  Q
    ||| || |||| |||| | |||||| |||| | |||||||    
T  20518088 ctcatcaagcaccaaatatcaggtattgtatcatcaaaac 20518049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 243 - 358
Target Start/End: Original strand, 53767224 - 53767339
Alignment:
Q  243 ttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttctacg 342  Q
    |||||||| ||||||||| |||||| || |||||||  |  |||| ||| |||||  |||| ||||||||||||||||||||| ||| ||||||||||||    
T  53767224 ttttctttccctccaccttcaaaaacccaaaaagtgtaattttttgggtcaaaattctcatcccaaatcattgcaaatcgtcatgaagcaagtttctacg 53767323  T
Q  343 ctcgtcgagcatcaaa 358  Q
    ||| || |||| ||||    
T  53767324 ctcatcaagcaccaaa 53767339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 99; Significance: 1e-48; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 240 - 382
Target Start/End: Complemental strand, 34017541 - 34017399
Alignment:
Q  240 attttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttct 339  Q
    |||||||||||  |||||||||||||||| |||||||||| ||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  34017541 attttttctttcactccacctccaaaaattccaaaagtgcaaaattttgggtaaaaatcttcatttcaaatcattgcaaatcgtcaggaaacaagtttct 34017442  T
Q  340 acgctcgtcgagcatcaaagaacaggtaatgtaccgtcaaaac 382  Q
    |||||| || |||||||||||||| |||||||| |||||||||    
T  34017441 acgctcatcaagcatcaaagaacatgtaatgtatcgtcaaaac 34017399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 240 - 382
Target Start/End: Complemental strand, 30491658 - 30491515
Alignment:
Q  240 attttttcttttcctccacctccaaaaatccc-aaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttc 338  Q
    ||||||||||| |||||||||||||||| ||| ||||||||||||||||  || ||||| |||||||||||||||||||||||||||||| |||||||||    
T  30491658 attttttctttccctccacctccaaaaacccccaaaagtgcgaaattttgagtcaaaatcttcattccaaatcattgcaaatcgtcaggagacaagtttc 30491559  T
Q  339 tacgctcgtcgagcatcaaagaacaggtaatgtaccgtcaaaac 382  Q
    ||||||| || ||||||||||||||||||||||||  |||||||    
T  30491558 tacgctcatcaagcatcaaagaacaggtaatgtacaatcaaaac 30491515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 240 - 380
Target Start/End: Original strand, 38739551 - 38739690
Alignment:
Q  240 attttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttct 339  Q
    ||||||||||| |||||||||||||||| || ||||||| ||| |||| ||| ||||| ||||||| |||||||||||||||||||||||||||| ||||    
T  38739551 attttttctttccctccacctccaaaaacccaaaaagtgagaatttttgggtcaaaatcttcattctaaatcattgcaaatcgtcaggaaacaag-ttct 38739649  T
Q  340 acgctcgtcgagcatcaaagaacaggtaatgtaccgtcaaa 380  Q
    |||||| || |||||||||||||||||||||||||||||||    
T  38739650 acgctcatcaagcatcaaagaacaggtaatgtaccgtcaaa 38739690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 240 - 382
Target Start/End: Complemental strand, 763246 - 763105
Alignment:
Q  240 attttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttct 339  Q
    ||||||||||| ||||||||| ||||| ||| |||||||||||||||| | ||||||| ||||||||||||||||||||||||| ||||||||| |||||    
T  763246 attttttctttccctccaccttcaaaattcc-aaaagtgcgaaattttggataaaaatcttcattccaaatcattgcaaatcgttaggaaacaaatttct 763148  T
Q  340 acgctcgtcgagcatcaaagaacaggtaatgtaccgtcaaaac 382  Q
    |||||| || |||||||||||| |||||||||| |||||||||    
T  763147 acgctcatcaagcatcaaagaataggtaatgtagcgtcaaaac 763105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 243 - 382
Target Start/End: Original strand, 5504933 - 5505068
Alignment:
Q  243 ttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttctacg 342  Q
    |||| ||| ||||||||||||||||  |||||||||| ||||||| ||||||||| |||||    ||||||||||||||||||| ||||| |||||||||    
T  5504933 ttttttttccctccacctccaaaaactccaaaagtgcaaaattttgggtaaaaatcttcat----aatcattgcaaatcgtcagaaaacaggtttctacg 5505028  T
Q  343 ctcgtcgagcatcaaagaacaggtaatgtaccgtcaaaac 382  Q
    ||| || || |||||||||||||||||||||| |||||||    
T  5505029 ctcatcaagaatcaaagaacaggtaatgtaccatcaaaac 5505068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 241 - 338
Target Start/End: Complemental strand, 33144045 - 33143948
Alignment:
Q  241 ttttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttc 338  Q
    |||||||||| |||||||||||||||  ||||||| ||||||||||| ||| ||||| |||||||||||||||||||||||||||| |||||||||||    
T  33144045 ttttttctttccctccacctccaaaacccccaaaaatgcgaaattttgggtgaaaatcttcattccaaatcattgcaaatcgtcagaaaacaagtttc 33143948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 243 - 382
Target Start/End: Original strand, 32910585 - 32910724
Alignment:
Q  243 ttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttctacg 342  Q
    |||||||| ||||||||| |||||| || ||||||||||| |||| ||| |||||  |||| ||||| ||||||||||||||| ||| |||||||||||     
T  32910585 ttttctttccctccaccttcaaaaacccaaaaagtgcgaatttttgggtcaaaattctcatcccaaaccattgcaaatcgtcatgaagcaagtttctaca 32910684  T
Q  343 ctcgtcgagcatcaaagaacaggtaatgtaccgtcaaaac 382  Q
    ||| || |||| |||| | |||||| |||| | |||||||    
T  32910685 ctcatcaagcaccaaatatcaggtattgtatcatcaaaac 32910724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 367
Target Start/End: Complemental strand, 29195966 - 29195842
Alignment:
Q  243 ttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttctacg 342  Q
    |||||||| ||||||||| |||||| || |||||||| |  |||| ||| || ||  |||| |||||||||||||||||||||| || ||||||||||||    
T  29195966 ttttctttccctccaccttcaaaaacccaaaaagtgcaattttttaggtcaatatcctcatcccaaatcattgcaaatcgtcagaaagcaagtttctacg 29195867  T
Q  343 ctcgtcgagcatcaaagaacaggta 367  Q
    ||| || |||| |||| | ||||||    
T  29195866 ctcatcaagcaccaaatatcaggta 29195842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 242 - 328
Target Start/End: Original strand, 16109318 - 16109403
Alignment:
Q  242 tttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcagga 328  Q
    ||||||||| |||||||||||||||| || ||||||||||  |||| ||| ||||| |||||||||||| |||| ||||||||||||    
T  16109318 tttttctttccctccacctccaaaaacccaaaaagtgcgattttttgggtcaaaatcttcattccaaattattg-aaatcgtcagga 16109403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 257 - 372
Target Start/End: Complemental strand, 15235165 - 15235049
Alignment:
Q  257 acctccaaaaatcccaaaagtgcgaaatttttgg-taaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttctacgctcgtcgagcatc 355  Q
    ||||||||||| || |||||||| |  ||||||| | ||||| |||||||||||||||||||||||||||| || ||||||  ||| ||| || ||||||    
T  15235165 acctccaaaaacccaaaaagtgcaatttttttgggtcaaaatcttcattccaaatcattgcaaatcgtcagaaagcaagttcatacactcatcaagcatc 15235066  T
Q  356 aaagaacaggtaatgta 372  Q
    ||| | || ||||||||    
T  15235065 aaatatcaagtaatgta 15235049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 243 - 344
Target Start/End: Complemental strand, 20887806 - 20887705
Alignment:
Q  243 ttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttctacg 342  Q
    |||||||| ||| ||||| |||||| || ||||||| ||  ||||  || |||||  |||| |||||||||||||||||||||||||  |||||||||||    
T  20887806 ttttctttccctacaccttcaaaaacccaaaaagtgggattttttgagtcaaaatcctcatcccaaatcattgcaaatcgtcaggaagaaagtttctacg 20887707  T
Q  343 ct 344  Q
    ||    
T  20887706 ct 20887705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 253 - 329
Target Start/End: Complemental strand, 8736538 - 8736462
Alignment:
Q  253 ctccacctccaaaaatcccaaaagtgcgaaatttttgg-taaaaatattcattccaaatcattgcaaatcgtcaggaa 329  Q
    ||||||||||||||| || |||||||| |||||||||  | ||||| |||||| |||||||||||||||| |||||||    
T  8736538 ctccacctccaaaaacccaaaaagtgc-aaatttttgaatcaaaatcttcatttcaaatcattgcaaatcatcaggaa 8736462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 325
Target Start/End: Complemental strand, 35050390 - 35050308
Alignment:
Q  243 ttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtca 325  Q
    |||||||| ||||||||| |||||||   |||||| |||  |||| ||| |||||  |||| |||||||||||||||||||||    
T  35050390 ttttctttccctccaccttcaaaaataaaaaaagtacgattttttgggtcaaaatcctcatcccaaatcattgcaaatcgtca 35050308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 1e-48; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 240 - 382
Target Start/End: Complemental strand, 8277325 - 8277183
Alignment:
Q  240 attttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttct 339  Q
    ||||||||||| |||||||||||||||| | ||||| ||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  8277325 attttttctttccctccacctccaaaaacctcaaaaatgcaaaattttgggtaaaaatcttcattccaaatcattgcaaatcgtcaggaaacaagtttct 8277226  T
Q  340 acgctcgtcgagcatcaaagaacaggtaatgtaccgtcaaaac 382  Q
    |||||| || || |||||||||||||||||||| |||||||||    
T  8277225 acgctcatcaagtatcaaagaacaggtaatgtatcgtcaaaac 8277183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 240 - 382
Target Start/End: Original strand, 11573848 - 11573997
Alignment:
Q  240 attttttcttttcctccacctccaaaaatcccaaaagtgc-------gaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaaca 332  Q
    ||||||||||| |||||||||||||||| |||||||||||       |||||||| ||||||||| ||||||||||||||||||||||||||||||||||    
T  11573848 attttttctttccctccacctccaaaaaccccaaaagtgcgatgtgcgaaattttgggtaaaaatcttcattccaaatcattgcaaatcgtcaggaaaca 11573947  T
Q  333 agtttctacgctcgtcgagcatcaaagaacaggtaatgtaccgtcaaaac 382  Q
    |||||||| |||| || |||||||||||||||||||||||||||||||||    
T  11573948 agtttctatgctcatcaagcatcaaagaacaggtaatgtaccgtcaaaac 11573997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 243 - 372
Target Start/End: Complemental strand, 20927644 - 20927515
Alignment:
Q  243 ttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttctacg 342  Q
    |||||||| ||||||||| |||||| || |||||||| ||||||| ||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  20927644 ttttctttccctccaccttcaaaaacccaaaaagtgcaaaattttaggtcaaaatcttcattccaaatcattgcaaatcgtcaggaagcaagtttctacg 20927545  T
Q  343 ctcgtcgagcatcaaagaacaggtaatgta 372  Q
    ||| || ||||||||| | |||||||||||    
T  20927544 ctcatcaagcatcaaatatcaggtaatgta 20927515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 252 - 382
Target Start/End: Original strand, 31133337 - 31133467
Alignment:
Q  252 cctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttctacgctcgtcgag 351  Q
    |||||||||||||||| || ||||||| ||| |||| ||| ||||| |||||||||||| |||||||||||| |  ||||||||||||| | || || ||    
T  31133337 cctccacctccaaaaacccaaaaagtgagaatttttgggtcaaaatcttcattccaaattattgcaaatcgttataaaacaagtttctatgttcatcaag 31133436  T
Q  352 catcaaagaacaggtaatgtaccgtcaaaac 382  Q
    |||||||||||||||||||||||||||||||    
T  31133437 catcaaagaacaggtaatgtaccgtcaaaac 31133467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 240 - 372
Target Start/End: Original strand, 35000441 - 35000573
Alignment:
Q  240 attttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttct 339  Q
    ||||||||||| | |||||||| ||||| || ||||||||||| |||| ||| ||||| ||| |||||||||||||||||||| |||||| ||||| | |    
T  35000441 attttttctttccttccacctctaaaaacccaaaaagtgcgaacttttgggtcaaaatcttcgttccaaatcattgcaaatcgccaggaagcaagtctat 35000540  T
Q  340 acgctcgtcgagcatcaaagaacaggtaatgta 372  Q
    || ||| || |||||||||||||||||||||||    
T  35000541 acactcatcaagcatcaaagaacaggtaatgta 35000573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 241 - 371
Target Start/End: Complemental strand, 22787916 - 22787786
Alignment:
Q  241 ttttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttcta 340  Q
    |||||||||| |||||||||||||||| ||  |||||||||| |||| ||| ||||| ||||||| ||||||||||||||||||| |||  |||||||||    
T  22787916 ttttttctttccctccacctccaaaaacccataaagtgcgaatttttgggtcaaaatcttcattctaaatcattgcaaatcgtcatgaagtaagtttcta 22787817  T
Q  341 cgctcgtcgagcatcaaagaacaggtaatgt 371  Q
    ||||| || ||||||| |||| |||| ||||    
T  22787816 cgctcatcaagcatcatagaataggttatgt 22787786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 243 - 358
Target Start/End: Complemental strand, 9829483 - 9829368
Alignment:
Q  243 ttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttctacg 342  Q
    |||||||| ||||||||| ||||||  | ||||||||||| |||| ||| |||||  |||| ||||||||||||||||||||||||| ||||||||||||    
T  9829483 ttttctttccctccaccttcaaaaactcaaaaagtgcgaatttttgggtcaaaatcctcatcccaaatcattgcaaatcgtcaggaagcaagtttctacg 9829384  T
Q  343 ctcgtcgagcatcaaa 358  Q
    ||| || |||| ||||    
T  9829383 ctcatcaagcaccaaa 9829368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1063 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: scaffold1063
Description:

Target: scaffold1063; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 241 - 382
Target Start/End: Original strand, 1641 - 1782
Alignment:
Q  241 ttttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttcta 340  Q
    |||||||||| |||||||||||||||| |||||||||||||| |||| || |||||| || |||||||||||||||||||||||||||||||||||||||    
T  1641 ttttttctttccctccacctccaaaaaccccaaaagtgcgaatttttgggcaaaaatctttattccaaatcattgcaaatcgtcaggaaacaagtttcta 1740  T
Q  341 cgctcgtcgagcatcaaagaacaggtaatgtaccgtcaaaac 382  Q
    ||||| || |||||| ||||||| ||||||||||||||||||    
T  1741 cgctcatcaagcatcgaagaacatgtaatgtaccgtcaaaac 1782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 242 - 382
Target Start/End: Complemental strand, 38249 - 38109
Alignment:
Q  242 tttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttctac 341  Q
    ||||||||| |||||||||||||||| || |||||||| || |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  38249 tttttctttccctccacctccaaaaagccaaaaagtgcaaatttttgggtaaaaatcttcattccaaatcattgcaaatcgtcaggaaacaagtttctac 38150  T
Q  342 gctcgtcgagcatcaaagaacaggtaatgtaccgtcaaaac 382  Q
    |||| || ||||||||||||||  |||||||| ||||||||    
T  38149 gctcatcaagcatcaaagaacatataatgtacagtcaaaac 38109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 1e-41; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 252 - 382
Target Start/End: Original strand, 34276418 - 34276548
Alignment:
Q  252 cctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttctacgctcgtcgag 351  Q
    |||||||||||||||| |||||||| | |||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| | || |     
T  34276418 cctccacctccaaaaaccccaaaagagagaaattttgggtaaaaatcttcattccaaatcattgcaaatcgtcatgaaacaagtttctacgcccatcaac 34276517  T
Q  352 catcaaagaacaggtaatgtaccgtcaaaac 382  Q
    ||||||||||||||| |||||||||||||||    
T  34276518 catcaaagaacaggtgatgtaccgtcaaaac 34276548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 243 - 354
Target Start/End: Complemental strand, 24626172 - 24626061
Alignment:
Q  243 ttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttctacg 342  Q
    |||||||| ||| ||||||||||||  | |||||||| |  |||| ||||||||| ||||||||||||||||||||||| ||| ||| ||||||||||||    
T  24626172 ttttctttccctgcacctccaaaaacacaaaaagtgcaattttttgggtaaaaatcttcattccaaatcattgcaaatcatcatgaagcaagtttctacg 24626073  T
Q  343 ctcgtcgagcat 354  Q
    ||| || |||||    
T  24626072 ctcatcaagcat 24626061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 242 - 382
Target Start/End: Complemental strand, 2807296 - 2807157
Alignment:
Q  242 tttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttctac 341  Q
    ||||||||| |||||||||| ||||  || |||||| | |  |||| ||| ||||| ||||||  ||||||||||||||||| ||||| ||||||  |||    
T  2807296 tttttctttccctccacctctaaaac-ccaaaaagtacaattttttgggtcaaaatcttcatttgaaatcattgcaaatcgttaggaagcaagttcttac 2807198  T
Q  342 gctcgtcgagcatcaaagaacaggtaatgtaccgtcaaaac 382  Q
    ||||||| | ||||||||||||||||||||| | |||||||    
T  2807197 gctcgtcaaacatcaaagaacaggtaatgtatcatcaaaac 2807157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 292 - 372
Target Start/End: Complemental strand, 20532181 - 20532101
Alignment:
Q  292 aaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttctacgctcgtcgagcatcaaagaacaggtaatgta 372  Q
    |||||| |||||||||||||||||||||| ||  |||| ||||||||||||||| || ||||||||| | |||||||||||    
T  20532181 aaaaattttcattccaaatcattgcaaattgtatggaagcaagtttctacgctcatcaagcatcaaataccaggtaatgta 20532101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 272 - 372
Target Start/End: Original strand, 32075054 - 32075154
Alignment:
Q  272 aaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttctacgctcgtcgagcatcaaagaacaggtaatgt 371  Q
    ||||||| ||| |||| ||| |||||  |||| ||||||||||| ||||| ||||||| ||||||||||||||| || ||||||||| | ||||||||||    
T  32075054 aaaagtgtgaatttttgggtcaaaatcctcatcccaaatcattgtaaatcatcaggaagcaagtttctacgctcatcaagcatcaaatatcaggtaatgt 32075153  T
Q  372 a 372  Q
    |    
T  32075154 a 32075154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 253 - 372
Target Start/End: Complemental strand, 13868307 - 13868188
Alignment:
Q  253 ctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttctacgctcgtcgagc 352  Q
    |||||||||||||||  | |||||||| || |||| ||| ||| | |||||| ||||||||||||||||||  ||||  |||||||||| ||| || |||    
T  13868307 ctccacctccaaaaactcaaaaagtgcaaatttttgggtcaaattcttcatttcaaatcattgcaaatcgtggggaagtaagtttctacactcatcaagc 13868208  T
Q  353 atcaaagaacaggtaatgta 372  Q
    |||||| |  ||||||||||    
T  13868207 atcaaatattaggtaatgta 13868188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 240 - 282
Target Start/End: Original strand, 33228332 - 33228374
Alignment:
Q  240 attttttcttttcctccacctccaaaaatcccaaaagtgcgaa 282  Q
    |||||||||||||||||||||||||||| || |||||||||||    
T  33228332 attttttcttttcctccacctccaaaaacccaaaaagtgcgaa 33228374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 284 - 369
Target Start/End: Original strand, 14189823 - 14189908
Alignment:
Q  284 tttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttctacgctcgtcgagcatcaaagaacaggtaat 369  Q
    |||| ||| ||||| |||||| |||||||||||||||||| |||||  ||||| |||||||| || ||||| ||| | ||||||||    
T  14189823 ttttgggtcaaaatcttcatttcaaatcattgcaaatcgttaggaagaaagttactacgctcatcaagcataaaaaatcaggtaat 14189908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 243 - 297
Target Start/End: Complemental strand, 20534421 - 20534367
Alignment:
Q  243 ttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaat 297  Q
    |||||||| ||||||||| |||||| || |||||||||||||||| ||| |||||    
T  20534421 ttttctttccctccaccttcaaaaacccaaaaagtgcgaaattttgggtcaaaat 20534367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 284 - 372
Target Start/End: Complemental strand, 27188276 - 27188188
Alignment:
Q  284 tttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttctacgctcgtcgagcatcaaagaacaggtaatgta 372  Q
    |||| ||| ||||| |||||| ||||||||||| |||||||||||| ||| |||| |||| | || | ||| ||| | |||||||||||    
T  27188276 ttttgggttaaaatcttcatttcaaatcattgctaatcgtcaggaagcaaatttccacgcccatcaatcataaaaaatcaggtaatgta 27188188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 9e-37; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 240 - 382
Target Start/End: Complemental strand, 2369800 - 2369658
Alignment:
Q  240 attttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttct 339  Q
    ||||||||||| |||||||||| ||||| || ||||||| ||| |||| ||| ||||| ||||||||||||||||||||||||||| ||| |||||||||    
T  2369800 attttttctttccctccacctctaaaaacccaaaaagtgtgaatttttgggtcaaaatcttcattccaaatcattgcaaatcgtcatgaagcaagtttct 2369701  T
Q  340 acgctcgtcgagcatcaaagaacaggtaatgtaccgtcaaaac 382  Q
    || ||| || ||||||||||||||||||||||| | |||||||    
T  2369700 acactcatcaagcatcaaagaacaggtaatgtatcctcaaaac 2369658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 240 - 369
Target Start/End: Complemental strand, 4452524 - 4452395
Alignment:
Q  240 attttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttct 339  Q
    ||||||||||| |||||| ||||||||| || ||||||||||| |||| ||| ||||| |||||||||||| |||||||||| ||||||| |||||||||    
T  4452524 attttttctttccctccatctccaaaaacccaaaaagtgcgaatttttgggtcaaaatcttcattccaaataattgcaaatcatcaggaagcaagtttct 4452425  T
Q  340 acgctcgtcgagcatcaaagaacaggtaat 369  Q
    ||  || || ||||||||||||||||||||    
T  4452424 acattcatcaagcatcaaagaacaggtaat 4452395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 243 - 382
Target Start/End: Original strand, 23941343 - 23941482
Alignment:
Q  243 ttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttctacg 342  Q
    |||||||| ||||||||| |||||| || ||||||||||| |||||||| |||||  |||| ||||||||||||||||||||| ||| ||||||||||||    
T  23941343 ttttctttccctccaccttcaaaaacccaaaaagtgcgaattttttggtcaaaatcctcatcccaaatcattgcaaatcgtcatgaagcaagtttctacg 23941442  T
Q  343 ctcgtcgagcatcaaagaacaggtaatgtaccgtcaaaac 382  Q
    ||| || |||| |||| | |||||| |||| | |||||||    
T  23941443 ctcatcaagcaccaaatatcaggtattgtatcatcaaaac 23941482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 243 - 382
Target Start/End: Original strand, 44222009 - 44222148
Alignment:
Q  243 ttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttctacg 342  Q
    |||||||| ||||||||| |||||| || ||||||||||  |||| ||| |||||  |||| ||||||||||||||||||||||||| ||||||||||||    
T  44222009 ttttctttccctccaccttcaaaaacccaaaaagtgcgattttttgggtcaaaatcctcatcccaaatcattgcaaatcgtcaggaagcaagtttctacg 44222108  T
Q  343 ctcgtcgagcatcaaagaacaggtaatgtaccgtcaaaac 382  Q
    ||| || ||||||||| | |||||| |||| | |||||||    
T  44222109 ctcatcaagcatcaaatatcaggtattgtatcatcaaaac 44222148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 243 - 372
Target Start/End: Original strand, 4278602 - 4278732
Alignment:
Q  243 ttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaa-caagtttctac 341  Q
    |||||||| ||||||||| |||||| |||||||||| ||| |||||||| |||||  |||| ||||||||||||| ||||||||||||  ||||||||||    
T  4278602 ttttctttccctccaccttcaaaaaccccaaaagtgagaattttttggtcaaaatcctcatcccaaatcattgcacatcgtcaggaaagtaagtttctac 4278701  T
Q  342 gctcgtcgagcatcaaagaacaggtaatgta 372  Q
    |||| || |||| |||| | |||||| ||||    
T  4278702 gctcatcaagcaccaaatatcaggtattgta 4278732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 243 - 382
Target Start/End: Original strand, 11356339 - 11356478
Alignment:
Q  243 ttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttctacg 342  Q
    |||||||| ||||||||| |||||| || ||||||||||  |||| ||| |||||  |||| ||||||||||||||||| ||||||| ||||||||||||    
T  11356339 ttttctttccctccaccttcaaaaacccaaaaagtgcgattttttgggtcaaaattctcatcccaaatcattgcaaatcatcaggaagcaagtttctacg 11356438  T
Q  343 ctcgtcgagcatcaaagaacaggtaatgtaccgtcaaaac 382  Q
     || || |||| |||| | |||||| |||| | |||||||    
T  11356439 ttcatcaagcaccaaatatcaggtattgtatcatcaaaac 11356478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 240 - 329
Target Start/End: Complemental strand, 4452846 - 4452757
Alignment:
Q  240 attttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaa 329  Q
    ||||||||||| |||||||||||||||| |  |||||||| || |||| ||| ||||| |||||||||||| |||||||||| |||||||    
T  4452846 attttttctttccctccacctccaaaaacctaaaaagtgcaaatttttgggtcaaaatcttcattccaaataattgcaaatcatcaggaa 4452757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 253 - 341
Target Start/End: Original strand, 31730919 - 31731006
Alignment:
Q  253 ctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttctac 341  Q
    ||||||||||||||| || || |||||||| || | ||| || || |||||| || ||||||||||||||||||||| |||||||||||    
T  31730919 ctccacctccaaaaacccaaagagtgcgaa-ttgtgggtcaatatcttcatttcatatcattgcaaatcgtcaggaagcaagtttctac 31731006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 243 - 313
Target Start/End: Complemental strand, 13070579 - 13070509
Alignment:
Q  243 ttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcat 313  Q
    |||||||| |||||||||||||||| || ||||||| ||  |||| ||| ||||| |||||||||||||||    
T  13070579 ttttctttccctccacctccaaaaacccaaaaagtgtgattttttgggtcaaaatcttcattccaaatcat 13070509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 278
Target Start/End: Complemental strand, 10526898 - 10526860
Alignment:
Q  240 attttttcttttcctccacctccaaaaatcccaaaagtg 278  Q
    ||||||||||| ||||||||||||||||||| |||||||    
T  10526898 attttttctttccctccacctccaaaaatccaaaaagtg 10526860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0599 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0599
Description:

Target: scaffold0599; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 243 - 382
Target Start/End: Original strand, 8681 - 8820
Alignment:
Q  243 ttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttctacg 342  Q
    |||| ||| ||||||||| |||||| || ||||||||||| |||| ||| |||||  |||| ||||||| ||||||||||||||||| ||||||||||||    
T  8681 ttttttttccctccaccttcaaaaacccaaaaagtgcgaatttttgggtcaaaatcctcatcccaaatctttgcaaatcgtcaggaagcaagtttctacg 8780  T
Q  343 ctcgtcgagcatcaaagaacaggtaatgtaccgtcaaaac 382  Q
    ||| || ||||  ||| | |||||| |||| | |||||||    
T  8781 ctcatcaagcacaaaatatcaggtattgtatcatcaaaac 8820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1050 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold1050
Description:

Target: scaffold1050; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 243 - 345
Target Start/End: Original strand, 2061 - 2163
Alignment:
Q  243 ttttcttttcctccacctccaaaaatcccaaaagtgcgaaatttttggtaaaaatattcattccaaatcattgcaaatcgtcaggaaacaagtttctacg 342  Q
    |||||||| |||||||||  ||||| || ||||||||||  |||| |||||||||  ||||   ||||||||||||||||||||||| ||||||||||||    
T  2061 ttttctttccctccacctttaaaaacccaaaaagtgcgattttttgggtaaaaatgctcatcttaaatcattgcaaatcgtcaggaagcaagtttctacg 2160  T
Q  343 ctc 345  Q
    |||    
T  2161 ctc 2163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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