View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21628_low_9 (Length: 386)
Name: NF21628_low_9
Description: NF21628
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21628_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 21658292 - 21657920
Alignment:
| Q |
1 |
tacaattgggatcccagcggttgaagcaggctatctgaatcaagggttgtcttactacaagacactttttcacttctcatcaatataagagaataaaact |
100 |
Q |
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| T |
21658292 |
tacaattgggctccaagtggttgaaggaggctatctgaatcaaggcttgtcatactacaagacaactttccaattctcagcaatatcagagaataaaact |
21658193 |
T |
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| Q |
101 |
ttgttgagtgtgaagatctcttatgatcatgaatctgagcttatagaagaaaaagtcaaacctacaaagacatcagagtccactctattttatcttgggc |
200 |
Q |
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| T |
21658192 |
ttggtgaatgtgaagatctcttatgatcatgaatctgagcttatagaagaaaaagtcaaacctaccaagacatcagagtccactctattttatcttgggc |
21658093 |
T |
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| Q |
201 |
aactagaaaaatttctgttaaatggtgcttgatgaattaatatttgacgtatgtaccatttttgttttgttgaagattgctttactatttaaacatagaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21658092 |
aactagaaaaatttctgttaaatggtgcttgatgaattaatatttgacatatgtaccatttttgttttgttgaagattgctttactatttaaacatagaa |
21657993 |
T |
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| Q |
301 |
ataaggaccaagagcaacacctattagcaattgatatgagaatccatttggccttgacttgatcttcatctct |
373 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
21657992 |
ataaggaccaagagcaacacctattagtaattgatatgagaatccatttgaccttgacttgatcttcatctct |
21657920 |
T |
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