View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21629_high_2 (Length: 355)
Name: NF21629_high_2
Description: NF21629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21629_high_2 |
 | |
|
| [»] scaffold0069 (1 HSPs) |
| | |
|
| [»] scaffold0006 (3 HSPs) |
| | |
|
| [»] scaffold0460 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0069 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: scaffold0069
Description:
Target: scaffold0069; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 9 - 328
Target Start/End: Original strand, 47208 - 47519
Alignment:
| Q |
9 |
tttaatggaaaatatggttttgggataacatccctctaatgggcattggttggatcatttctggactgttttctaatcattttttatcattctatatttc |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47208 |
tttaatggaaaatatggttttgggataacatccctctaatgggcattggttggatcatttctggactgttttctaatcattttttatcattctat----- |
47302 |
T |
|
| Q |
109 |
tattctctatattagaaataactatttgaa-ttttccatggttaggaatctcatgtcgatgagtatttctttacttcatcttcatagtcaacaccccagg |
207 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
47303 |
---tctctatattagaaataactatttgaaattttccatggttaggaatctcatgtcgatgagtattt-tttacttcatcttcatagtcaacaccccagg |
47398 |
T |
|
| Q |
208 |
gagttaagattgagagccttttgagcatacaaactcataggaacagttccatcttctgtttcatctgagctaatgtcatcctttggactggattcacagt |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47399 |
gagttaagattgagagccttttgagcatacaaactcaaaggaacagttccatcttctgtttcatctgagctaatgtcatcctttggactggattcacagt |
47498 |
T |
|
| Q |
308 |
cttggttttcatgagtttctg |
328 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
47499 |
cttggttttcatgagtttctg |
47519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 272; Significance: 1e-152; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 9 - 328
Target Start/End: Original strand, 20376906 - 20377217
Alignment:
| Q |
9 |
tttaatggaaaatatggttttgggataacatccctctaatgggcattggttggatcatttctggactgttttctaatcattttttatcattctatatttc |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20376906 |
tttaatggaaaatatggttttgggataacatccctctaatgggcattggttggatcatttctggactgttttctaatcattttttatcattctat----- |
20377000 |
T |
|
| Q |
109 |
tattctctatattagaaataactatttgaa-ttttccatggttaggaatctcatgtcgatgagtatttctttacttcatcttcatagtcaacaccccagg |
207 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
20377001 |
---tctctatattagaaataactatttgaaattttccatggttaggaatctcatgtcgatgagtattt-tttacttcatcttcatagtcaacaccccagg |
20377096 |
T |
|
| Q |
208 |
gagttaagattgagagccttttgagcatacaaactcataggaacagttccatcttctgtttcatctgagctaatgtcatcctttggactggattcacagt |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20377097 |
gagttaagattgagagccttttgagcatacaaactcaaaggaacagttccatcttctgtttcatctgagctaatgtcatcctttggactggattcacagt |
20377196 |
T |
|
| Q |
308 |
cttggttttcatgagtttctg |
328 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
20377197 |
cttggttttcatgagtttctg |
20377217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 20485440 - 20485757
Alignment:
| Q |
1 |
tatggtattttaatggaaaatatggttttgggataacatccctctaatgggcattggttggatcatttctggactgttttctaatcattttttatcattc |
100 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
20485440 |
tatgatattttaatggaaa-tatggttttgggataacatccctgtaatgggcattggttggatcatttctggactgttttctaatc-ttttttatcattc |
20485537 |
T |
|
| Q |
101 |
tatatttctattctctatattagaaataactatttgaa-ttttccatggttaggaatctcatgtcgatgagtatttctttacttcatcttcatagtcaac |
199 |
Q |
| |
|
||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||| || ||||| |
|
|
| T |
20485538 |
tat--------tctctatattagaaataactatttgaaattttccatggttaagaatctcatgtcgatgagtattt-tttacttcatcttattaatcaac |
20485628 |
T |
|
| Q |
200 |
accccagggagttaagattgagagccttttgagcatacaaactcataggaacagttccatcttctgtttcatctgagctaatgtcatcctttggactgga |
299 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
20485629 |
accctagggagttaagattgagagccatttgagcatgcaaactcaaaggaaccgttccatcttctgtttcatctgagctaatgtcatcctttggacagga |
20485728 |
T |
|
| Q |
300 |
ttcacagtcttggttttcatgagtttctg |
328 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
20485729 |
ttcacagtcttggttttcatgagtttctg |
20485757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 13676693 - 13676949
Alignment:
| Q |
1 |
tatggtattttaatggaaaatatggttttgggataacatccctctaatgggcattggttggatcatttctggactgttttctaatcattttttatcattc |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
13676693 |
tatgatattttaatggaaaatatggttttgggataacatccctgttatgggcattggttggatcatttctggactgttttctaatc-ttttttatcattt |
13676791 |
T |
|
| Q |
101 |
tatatttctattctctatattagaaataactatttgaa-ttttccatggttaggaatctcatgtcgatgagtatttctttacttcatcttcatagtcaac |
199 |
Q |
| |
|
||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
13676792 |
tat--------tctctatattagaaataactatttgaaattttccatggttaggaatctcatgtcaatgagtattt-tttacttcatcttcatagtcaac |
13676882 |
T |
|
| Q |
200 |
accccagggagttaagattgagagccttttgagcatacaaactcataggaacagttccatcttctgt |
266 |
Q |
| |
|
||||||| ||||||||||||||||| |||| ||||| |||| || |||||| |||||||||||||| |
|
|
| T |
13676883 |
accccagcgagttaagattgagagctttttaagcatgcaaagtcgaaggaactgttccatcttctgt |
13676949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 13595532 - 13595788
Alignment:
| Q |
1 |
tatggtattttaatggaaaatatggttttgggataacatccctctaatgggcattggttggatcatttctggactgttttctaatcattttttatcattc |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
13595532 |
tatgatattttaatggaaaatatggttttcggataacatccctctaatgggcattggttggatcatttctggactgttttctaatc-ttttttatcattc |
13595630 |
T |
|
| Q |
101 |
tatatttctattctctatattagaaataactatttgaa-ttttccatggttaggaatctcatgtcgatgagtatttctttacttcatcttcatagtcaac |
199 |
Q |
| |
|
||| ||||||||||||||||||||| ||||| |||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
13595631 |
tat--------tctctatattagaaataactacttgaaatttttcaaggttaggaatctcatgtcgatgagtattt-tttacttcatcttcatagtcaac |
13595721 |
T |
|
| Q |
200 |
accccagggagttaagattgagagccttttgagcatacaaactcataggaacagttccatcttctgt |
266 |
Q |
| |
|
||||||| |||||||||||||||| |||| |||| |||| || |||||| |||||||||||||| |
|
|
| T |
13595722 |
accccagcgagttaagattgagagatttttacgcatgcaaagtcgaaggaactgttccatcttctgt |
13595788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 271 - 328
Target Start/End: Complemental strand, 20511418 - 20511363
Alignment:
| Q |
271 |
tctgagctaatgtcatcctttggactggattcacagtcttggttttcatgagtttctg |
328 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
20511418 |
tctgagctaatgtcatcatttggactggatt--cagtcttggttttcatgagtttctg |
20511363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 113017 - 113335
Alignment:
| Q |
1 |
tatggtattttaatggaaaatatggttttgggataacatccctctaatgggcattggttggatcatttctggactgttttctaatcattttttatcattc |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
113017 |
tatgatattttaatggaaaatatggttttgggataacatccctgtaatgggcattggttggatcatttctggactgttttctaatc-ttttttatcattt |
113115 |
T |
|
| Q |
101 |
tatatttctattctctatattagaaataactatttgaattttcc-atggttaggaatctcatgtcgatgagtatttctttacttcatcttcatagtcaac |
199 |
Q |
| |
|
||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
113116 |
tat--------tctctatattagaaataactatttgaaatttcccatggttaggaatctcatgtcgatgagtattt-tttacttcatcttattagtcaac |
113206 |
T |
|
| Q |
200 |
accccagggagttaagattgagagccttttgagcatacaaactcataggaacagttccatcttctgtttcatctgagctaatgtcatcctttggactgga |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
113207 |
accccagggagttaagattgagagccttttgagcatgcaaactcaaaggaacagttccatcttctgtttcatctgagctaatgtcatcatttggactgga |
113306 |
T |
|
| Q |
300 |
ttcacagtcttggttttcatgagtttctg |
328 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
113307 |
ttcacagtcttggttttcatgagtttctg |
113335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 174275 - 174531
Alignment:
| Q |
1 |
tatggtattttaatggaaaatatggttttgggataacatccctctaatgggcattggttggatcatttctggactgttttctaatcattttttatcattc |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
174275 |
tatgatattttaatggaaaatatggttttgggataacatccctgttatgggcattggttggatcatttctggactgttttctaatc-ttttttatcattt |
174373 |
T |
|
| Q |
101 |
tatatttctattctctatattagaaataactatttgaa-ttttccatggttaggaatctcatgtcgatgagtatttctttacttcatcttcatagtcaac |
199 |
Q |
| |
|
||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
174374 |
tat--------tctctatattagaaataactatttgaaattttccatggttaggaatctcatgtcaatgagtattt-tttacttcatcttcatagtcaac |
174464 |
T |
|
| Q |
200 |
accccagggagttaagattgagagccttttgagcatacaaactcataggaacagttccatcttctgt |
266 |
Q |
| |
|
||||||| ||||||||||||||||| |||| ||||| |||| || |||||| |||||||||||||| |
|
|
| T |
174465 |
accccagcgagttaagattgagagctttttaagcatgcaaagtcgaaggaactgttccatcttctgt |
174531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 189683 - 189939
Alignment:
| Q |
1 |
tatggtattttaatggaaaatatggttttgggataacatccctctaatgggcattggttggatcatttctggactgttttctaatcattttttatcattc |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
189683 |
tatgatattttaatggaaaatatggttttgggataacatccctgttatgggcattggttggatcatttctggactgttttctaatc-ttttttatcattt |
189781 |
T |
|
| Q |
101 |
tatatttctattctctatattagaaataactatttgaa-ttttccatggttaggaatctcatgtcgatgagtatttctttacttcatcttcatagtcaac |
199 |
Q |
| |
|
||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
189782 |
tat--------tctctatattagaaataactatttgaaattttccatggttaggaatctcatgtcaatgagtattt-tttacttcatcttcatagtcaac |
189872 |
T |
|
| Q |
200 |
accccagggagttaagattgagagccttttgagcatacaaactcataggaacagttccatcttctgt |
266 |
Q |
| |
|
||||||| ||||||||||||||||| |||| ||||| |||| || |||||| |||||||||||||| |
|
|
| T |
189873 |
accccagcgagttaagattgagagctttttaagcatgcaaagtcgaaggaactgttccatcttctgt |
189939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0460 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: scaffold0460
Description:
Target: scaffold0460; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 6406 - 6724
Alignment:
| Q |
1 |
tatggtattttaatggaaaatatggttttgggataacatccctctaatgggcattggttggatcatttctggactgttttctaatcattttttatcattc |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6406 |
tatgatattttaatggaaaatatggttttgggataacatccctgtaatgggcattggttggatcatttctggactgttttctaatc-ttttttatcattc |
6504 |
T |
|
| Q |
101 |
tatatttctattctctatattagaaataactatttgaa-ttttccatggttaggaatctcatgtcgatgagtatttctttacttcatcttcatagtcaac |
199 |
Q |
| |
|
||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||| || ||||| |
|
|
| T |
6505 |
tat--------tctctatattagaaataactatttgaaattttccatggttaagaatctcatgtcgatgagtattt-tttacttcatcttattaatcaac |
6595 |
T |
|
| Q |
200 |
accccagggagttaagattgagagccttttgagcatacaaactcataggaacagttccatcttctgtttcatctgagctaatgtcatcctttggactgga |
299 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
6596 |
accctagggagttaagattgagagccatttgagcatgcaaactcaaaggaaccgttccatcttctgtttcatctgagctaatgtcatcctttggacagga |
6695 |
T |
|
| Q |
300 |
ttcacagtcttggttttcatgagtttctg |
328 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
6696 |
ttcacagtcttggttttcatgagtttctg |
6724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0460; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 10971 - 11289
Alignment:
| Q |
1 |
tatggtattttaatggaaaatatggttttgggataacatccctctaatgggcattggttggatcatttctggactgttttctaatcattttttatcattc |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
10971 |
tatgatattttaatggaaaatatggttttgggataacatccctgtaatgggcattggttggatcatttctggactgttttctaatc-ttttttatcattc |
11069 |
T |
|
| Q |
101 |
tatatttctattctctatattagaaataactatttgaa-ttttccatggttaggaatctcatgtcgatgagtatttctttacttcatcttcatagtcaac |
199 |
Q |
| |
|
||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||| || ||||| |
|
|
| T |
11070 |
tat--------tctctatattagaaataactatttgaaattttccatggttaagaatctcatgtcgatgagtattt-tttacttcatcttattaatcaac |
11160 |
T |
|
| Q |
200 |
accccagggagttaagattgagagccttttgagcatacaaactcataggaacagttccatcttctgtttcatctgagctaatgtcatcctttggactgga |
299 |
Q |
| |
|
|||| ||||||||||||||||||||| ||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
11161 |
accctagggagttaagattgagagccatttgagcatgcaaactcaaaggaaccgttccatcttctgtttcatctgagctaatgtcatcctttggacagga |
11260 |
T |
|
| Q |
300 |
ttcacagtcttggttttcatgagtttctg |
328 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
11261 |
ttcacagtcttggttttcatgagtttctg |
11289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 102; Significance: 1e-50; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 20837055 - 20836906
Alignment:
| Q |
1 |
tatggtattttaatggaaaatatggttttgggataacatccctctaatgggcattggttggatcatttctggactgttttctaatcattttttatcattc |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
20837055 |
tatgatattttaatggaaaatatggttttgggataacatccctgtaatgggcattggttggatcatttctggactgttttctaatc-ttttttatca--- |
20836960 |
T |
|
| Q |
101 |
tatatttctattctctatattagaaataactatttg-aattttccatggttaggaatct |
158 |
Q |
| |
|
|| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
20836959 |
-----ttttattctctatattagaaataactatttgaaattttccatggttaggaatct |
20836906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 153 - 273
Target Start/End: Complemental strand, 20835682 - 20835563
Alignment:
| Q |
153 |
gaatctcatgtcgatgagtatttctttacttcatcttcatagtcaacaccccagggagttaagattgagagccttttgagcatacaaactcataggaaca |
252 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
20835682 |
gaatctcatgtcgatgagtattt-tttacttcatcttattagtcaacaccccagggagttaagattgagagccttttgagcatgcaaactcaaaggaaca |
20835584 |
T |
|
| Q |
253 |
gttccatcttctgtttcatct |
273 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
20835583 |
gttccatcttctgtttcatct |
20835563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 249 - 325
Target Start/End: Complemental strand, 20770163 - 20770087
Alignment:
| Q |
249 |
aacagttccatcttctgtttcatctgagctaatgtcatcctttggactggattcacagtcttggttttcatgagttt |
325 |
Q |
| |
|
||||||| || ||| |||||||| ||||||||||||||| ||| ||||||||||||| |||||||| |||||||||| |
|
|
| T |
20770163 |
aacagtttcaacttttgtttcatatgagctaatgtcatcattttgactggattcacaatcttggttctcatgagttt |
20770087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 249 - 325
Target Start/End: Complemental strand, 20779957 - 20779881
Alignment:
| Q |
249 |
aacagttccatcttctgtttcatctgagctaatgtcatcctttggactggattcacagtcttggttttcatgagttt |
325 |
Q |
| |
|
||||||| || ||| |||||||| ||||||||||||||| ||| ||||||||||||| |||||||| |||||||||| |
|
|
| T |
20779957 |
aacagtttcaacttttgtttcatatgagctaatgtcatcattttgactggattcacaatcttggttctcatgagttt |
20779881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 23 - 193
Target Start/End: Complemental strand, 38053658 - 38053497
Alignment:
| Q |
23 |
tggttttgggataacatccctctaatgggcattggttggatcatttctggactgttttctaatcattttttatcattctatatttctattctctatatta |
122 |
Q |
| |
|
||||||||||||||||||||| | ||||||||| |||||||| ||||||| ||||||| | |||||| |||| ||||||||| ||| ||| |
|
|
| T |
38053658 |
tggttttgggataacatccctgt-atgggcattagttggatcttttctggcctgtttttgtagtatttttcatca--------ttctattctatatctta |
38053568 |
T |
|
| Q |
123 |
gaaataactatttg-aattttccatggttaggaatctcatgtcgatgagtatttctttacttcatcttcata |
193 |
Q |
| |
|
||||||||||||| || | ||| |||||||||||||| || ||||||||||| |||||||||| |||||| |
|
|
| T |
38053567 |
aaaataactatttgaaaatgtccttggttaggaatctcgtgctgatgagtattt-tttacttcattttcata |
38053497 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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