View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21629_high_3 (Length: 338)

Name: NF21629_high_3
Description: NF21629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21629_high_3
NF21629_high_3
[»] chr2 (6 HSPs)
chr2 (24-192)||(14433506-14433673)
chr2 (48-192)||(18739027-18739161)
chr2 (23-97)||(2590543-2590617)
chr2 (23-97)||(21189444-21189518)
chr2 (294-328)||(14433362-14433396)
chr2 (52-97)||(35969278-35969323)
[»] chr7 (8 HSPs)
chr7 (25-192)||(22301059-22301224)
chr7 (48-190)||(3850449-3850589)
chr7 (23-192)||(11674043-11674203)
chr7 (23-160)||(39426390-39426526)
chr7 (47-102)||(31210071-31210126)
chr7 (20-97)||(15569606-15569682)
chr7 (48-97)||(31206627-31206676)
chr7 (24-96)||(13815782-13815853)
[»] chr5 (4 HSPs)
chr5 (24-187)||(26702929-26703091)
chr5 (24-187)||(26972662-26972824)
chr5 (48-124)||(18594882-18594957)
chr5 (48-97)||(39292166-39292215)
[»] chr8 (9 HSPs)
chr8 (23-190)||(39655606-39655774)
chr8 (51-162)||(17028425-17028535)
chr8 (51-162)||(17558861-17558971)
chr8 (25-181)||(21347156-21347302)
chr8 (23-102)||(1788895-1788974)
chr8 (107-190)||(31183821-31183904)
chr8 (48-97)||(21185322-21185371)
chr8 (60-97)||(38676893-38676930)
chr8 (62-97)||(17088771-17088806)
[»] chr4 (6 HSPs)
chr4 (71-191)||(44643542-44643661)
chr4 (23-102)||(6667715-6667794)
chr4 (51-113)||(20058089-20058150)
chr4 (48-97)||(13010534-13010583)
chr4 (26-97)||(895488-895559)
chr4 (53-102)||(6671387-6671436)
[»] chr1 (8 HSPs)
chr1 (24-191)||(12141560-12141726)
chr1 (25-190)||(4242478-4242642)
chr1 (23-192)||(24981070-24981237)
chr1 (59-190)||(51465563-51465691)
chr1 (23-100)||(9111539-9111616)
chr1 (116-192)||(1953802-1953878)
chr1 (48-163)||(47580464-47580577)
chr1 (138-190)||(26310463-26310515)
[»] chr6 (5 HSPs)
chr6 (23-192)||(19697760-19697920)
chr6 (48-163)||(15518084-15518198)
chr6 (23-97)||(6591850-6591924)
chr6 (141-190)||(6591759-6591808)
chr6 (136-190)||(19976203-19976257)
[»] scaffold0028 (2 HSPs)
scaffold0028 (23-96)||(110163-110236)
scaffold0028 (23-97)||(127742-127816)
[»] chr3 (1 HSPs)
chr3 (100-191)||(11634075-11634166)
[»] scaffold0076 (1 HSPs)
scaffold0076 (23-97)||(6761-6835)
[»] scaffold0014 (1 HSPs)
scaffold0014 (23-97)||(82664-82738)
[»] scaffold0293 (1 HSPs)
scaffold0293 (20-64)||(4958-5002)


Alignment Details
Target: chr2 (Bit Score: 129; Significance: 1e-66; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 24 - 192
Target Start/End: Complemental strand, 14433673 - 14433506
Alignment:
Q  24 tgttgtatcttgggaagatgtgtacttatgaggcagataaaatccacaaggacagtgactatgtcacgcctcagatttacataacagtgttttgttttgc 123  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||||||||    
T  14433673 tgttgtatcttgggaagatgtgtacttatgaggcggataaaatccacaaggacagtgactatgtcacgcctcag-gttacataacagtgtattgttttgc 14433575  T
Q  124 aagtttcttctaatttgatttgtgaagattttgatggagccatgtcgacaaccaaattcaataagttcc 192  Q
    | |||||||||||||| ||||||||||||||||||||||||||||||||||  |||||| |||||||||    
T  14433574 aggtttcttctaatttaatttgtgaagattttgatggagccatgtcgacaattaaattcgataagttcc 14433506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 48 - 192
Target Start/End: Complemental strand, 18739161 - 18739027
Alignment:
Q  48 cttatgaggcagataaaatccacaaggacagtgactatgtcacgcctcagatttacataacagtgttttgttttgcaagtttcttctaatttgatttgtg 147  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||||         |  |||||||||||||||| |||||  ||||||  |||||||    
T  18739161 cttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctca---------agaagtgttttgttttgcaggtttc-cctaattaaatttgtg 18739072  T
Q  148 aagattttgatggagccatgtcgacaaccaaattcaataagttcc 192  Q
    ||| ||||||||||| | |||||||||| |||||| |||||||||    
T  18739071 aaggttttgatggagtcgtgtcgacaactaaattcgataagttcc 18739027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 97
Target Start/End: Original strand, 2590543 - 2590617
Alignment:
Q  23 ctgttgtatcttgggaagatgtgtacttatgaggcagataaaatccacaaggacagtgactatgtcacgcctcag 97  Q
    |||||||||| ||||| ||| ||  ||||||||||  ||||||||| ||||||||||||||||||||||||||||    
T  2590543 ctgttgtatcctgggaggatatgcgcttatgaggcgaataaaatcctcaaggacagtgactatgtcacgcctcag 2590617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 97
Target Start/End: Original strand, 21189444 - 21189518
Alignment:
Q  23 ctgttgtatcttgggaagatgtgtacttatgaggcagataaaatccacaaggacagtgactatgtcacgcctcag 97  Q
    ||||||||||  |||| ||| ||  |||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  21189444 ctgttgtatccggggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcag 21189518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 294 - 328
Target Start/End: Complemental strand, 14433396 - 14433362
Alignment:
Q  294 acattctctcagttgttactcttccttcgtctctg 328  Q
    |||||||||||||||||||||||||||||||||||    
T  14433396 acattctctcagttgttactcttccttcgtctctg 14433362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 35969323 - 35969278
Alignment:
Q  52 tgaggcagataaaatccacaaggacagtgactatgtcacgcctcag 97  Q
    |||||| |||||||||  ||||||||||||||||||||||||||||    
T  35969323 tgaggcggataaaatcttcaaggacagtgactatgtcacgcctcag 35969278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 88; Significance: 3e-42; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 25 - 192
Target Start/End: Complemental strand, 22301224 - 22301059
Alignment:
Q  25 gttgtatcttgggaagatgtgtacttatgaggcagataaaatccacaaggacagtgactatgtcacgcctcagatttacataacagtgttttgttttgca 124  Q
    |||||||||||||| ||| ||  |||||||||| |||||||||| ||||||||||||||||||||||||||||  |||||||| ||| ||||||||||||    
T  22301224 gttgtatcttgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcag-gttacataatagtattttgttttgca 22301126  T
Q  125 agtttcttctaatttgatttgtgaagattttgatggagccatgtcgacaaccaaattcaataagttcc 192  Q
     |||||  |||| ||||||||||||| ||||||||||  ||||||||||||||||||| |||||||||    
T  22301125 ggtttc-cctaaattgatttgtgaaggttttgatggaatcatgtcgacaaccaaattcgataagttcc 22301059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 48 - 190
Target Start/End: Complemental strand, 3850589 - 3850449
Alignment:
Q  48 cttatgaggcagataaaatccacaaggacagtgactatgtcacgcctcagatttacataacagtgttttgttttgcaagtttcttctaatttgatttgtg 147  Q
    ||||||||||  ||||||||  ||||||||||||||||||||||||||||| |||||||||||||| ||||||| || ||||| |||||||||||||||     
T  3850589 cttatgaggcgtataaaatcatcaaggacagtgactatgtcacgcctcaga-ttacataacagtgtgttgttttacaggtttcctctaatttgatttgta 3850491  T
Q  148 aagattttgatggagccatgtcgacaaccaaattcaataagtt 190  Q
    ||||  ||||||||||| ||||| |||| |||||  |||||||    
T  3850490 aaga-cttgatggagccctgtcggcaactaaatttgataagtt 3850449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 23 - 192
Target Start/End: Original strand, 11674043 - 11674203
Alignment:
Q  23 ctgttgtatcttgggaagatgtgtacttatgaggcagataaaatccacaaggacagtgactatgtcacgcctcagatttacataacagtgttttgttttg 122  Q
    |||||||||| ||||| ||| ||  |||||||||| |||||||||| ||||||||||||||||||||| ||||||           ||||||||||||||    
T  11674043 ctgttgtatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacacctcagga---------agtgttttgttttg 11674133  T
Q  123 caagtttcttctaatttgatttgtgaagattttgatggagccatgtcgacaaccaaattcaataagttcc 192  Q
    || |||||  ||||||  |||||||||| ||||||||||| | |||||||||| |||||| |||||||||    
T  11674134 caggtttcccctaattaaatttgtgaaggttttgatggagtcgtgtcgacaactaaattcgataagttcc 11674203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 23 - 160
Target Start/End: Complemental strand, 39426526 - 39426390
Alignment:
Q  23 ctgttgtatcttgggaagatgtgtacttatgaggcagataaaatccacaaggacagtgactatgtcacgcctcagatttacataacagtgttttgttttg 122  Q
    ||||| |||||||||| ||| |   |||||||| | |||||||||| |||||||||||||||| |||||||||||| |||| ||||||||  || |||||    
T  39426526 ctgttttatcttgggaggatattcgcttatgagacggataaaatcctcaaggacagtgactatatcacgcctcaga-ttacttaacagtgcgttattttg 39426428  T
Q  123 caagtttcttctaatttgatttgtgaagattttgatgg 160  Q
     | ||||| |||| ||||||||||||| ||||||||||    
T  39426427 taggtttcctctactttgatttgtgaaaattttgatgg 39426390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 47 - 102
Target Start/End: Complemental strand, 31210126 - 31210071
Alignment:
Q  47 acttatgaggcagataaaatccacaaggacagtgactatgtcacgcctcagattta 102  Q
    ||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||    
T  31210126 acttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcaggttta 31210071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 15569606 - 15569682
Alignment:
Q  20 aacctgttgtatcttgggaagatgtgtacttatgaggcagataaaatccacaaggacagtgactatgtcacgcctcag 97  Q
    ||||||||||||| ||||| ||| ||| |||||||||| ||| ||||||  ||||||||||||| |||||||||||||    
T  15569606 aacctgttgtatcctgggaggatatgtgcttatgaggcggat-aaatccctaaggacagtgactttgtcacgcctcag 15569682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 48 - 97
Target Start/End: Complemental strand, 31206676 - 31206627
Alignment:
Q  48 cttatgaggcagataaaatccacaaggacagtgactatgtcacgcctcag 97  Q
    |||||||||  |||||||||| ||| ||||||||||||||||||||||||    
T  31206676 cttatgaggtggataaaatcctcaaagacagtgactatgtcacgcctcag 31206627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 24 - 96
Target Start/End: Original strand, 13815782 - 13815853
Alignment:
Q  24 tgttgtatcttgggaagatgtgtacttatgaggcagataaaatccacaaggacagtgactatgtcacgcctca 96  Q
    ||||||||| ||||||||| ||  ||||||||||  ||||| |||  ||||||||||||| ||||||||||||    
T  13815782 tgttgtatcctgggaagatatgcgcttatgaggcgaataaa-tccttaaggacagtgactttgtcacgcctca 13815853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 7e-40; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 24 - 187
Target Start/End: Complemental strand, 26703091 - 26702929
Alignment:
Q  24 tgttgtatcttgggaagatgtgtacttatgaggcagataaaatccacaaggacagtgactatgtcacgcctcagatttacataacagtgttttgttttgc 123  Q
    ||||||||||||||| ||| ||   ||||||||| |||||||||| ||||||||||||||| ||||||| |||| || ||||||||||||||||||| ||    
T  26703091 tgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactaagtcacgcatcaggtt-acataacagtgttttgtttagc 26702993  T
Q  124 aagtttcttctaatttgatttgtgaagattttgatggagccatgtcgacaaccaaattcaataa 187  Q
    | ||||| ||||||||||||||||||| |||||||||||  |||||||| ||||||||| ||||    
T  26702992 aggtttcctctaatttgatttgtgaaggttttgatggagttatgtcgacgaccaaattcgataa 26702929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 24 - 187
Target Start/End: Complemental strand, 26972824 - 26972662
Alignment:
Q  24 tgttgtatcttgggaagatgtgtacttatgaggcagataaaatccacaaggacagtgactatgtcacgcctcagatttacataacagtgttttgttttgc 123  Q
    ||||||||||||||| ||| ||   ||||||||| |||||||||| ||||||||||||||| ||||||| |||| || ||||||||||||||||||| ||    
T  26972824 tgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactaagtcacgcatcaggtt-acataacagtgttttgtttagc 26972726  T
Q  124 aagtttcttctaatttgatttgtgaagattttgatggagccatgtcgacaaccaaattcaataa 187  Q
    | ||||| ||||||||||||||||||| |||||||||||  |||||||| ||||||||| ||||    
T  26972725 aggtttcctctaatttgatttgtgaaggttttgatggagttatgtcgacgaccaaattcgataa 26972662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 48 - 124
Target Start/End: Original strand, 18594882 - 18594957
Alignment:
Q  48 cttatgaggcagataaaatccacaaggacagtgactatgtcacgcctcagatttacataacagtgttttgttttgca 124  Q
    |||||||||| |||||||||  ||||||||||||| ||||||||||||||  |||||||| ||| ||||||||||||    
T  18594882 cttatgaggcggataaaatcttcaaggacagtgacaatgtcacgcctcag-gttacataatagtattttgttttgca 18594957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 97
Target Start/End: Original strand, 39292166 - 39292215
Alignment:
Q  48 cttatgaggcagataaaatccacaaggacagtgactatgtcacgcctcag 97  Q
    |||||||||| ||||||||||  ||||||||||||||| |||| ||||||    
T  39292166 cttatgaggcggataaaatccttaaggacagtgactatatcacacctcag 39292215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 83; Significance: 3e-39; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 23 - 190
Target Start/End: Complemental strand, 39655774 - 39655606
Alignment:
Q  23 ctgttgtatcttgggaagatgtgtacttatgaggcagataaaatccacaaggacagtgactatgtcacgcctcagatttacataacagtgttttgttttg 122  Q
    |||||||||| ||||| ||| || ||||||||||| |||||||||| ||||||||||||||||||||||||||||  |||| ||||||||| ||||||||    
T  39655774 ctgttgtatcatgggaggatatgcacttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcag-gttacttaacagtgtgttgttttg 39655676  T
Q  123 --caagtttcttctaatttgatttgtgaagattttgatggagccatgtcgacaaccaaattcaataagtt 190  Q
      || ||||| || |||||||||||||||||||||||||||||  ||||| ||| ||||||| |||||||    
T  39655675 cacaggtttcctccaatttgatttgtgaagattttgatggagctgtgtcggcaatcaaattcgataagtt 39655606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 51 - 162
Target Start/End: Original strand, 17028425 - 17028535
Alignment:
Q  51 atgaggcagataaaatccacaaggacagtgactatgtcacgcctcagatttacataacagtgttttgttttgcaagtttcttctaatttgatttgtgaag 150  Q
    ||||||| |||||||||| |||||||||||||| ||||||||||||| || |||||| ||| |||||||||||| ||||   ||||||||||||||||||    
T  17028425 atgaggcggataaaatcctcaaggacagtgactgtgtcacgcctcaggtt-acataatagtattttgttttgcaggttttccctaatttgatttgtgaag 17028523  T
Q  151 attttgatggag 162  Q
    ||||||||||||    
T  17028524 attttgatggag 17028535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 51 - 162
Target Start/End: Original strand, 17558861 - 17558971
Alignment:
Q  51 atgaggcagataaaatccacaaggacagtgactatgtcacgcctcagatttacataacagtgttttgttttgcaagtttcttctaatttgatttgtgaag 150  Q
    ||||||| |||||||||| |||||||||||||| ||||||||||||| || |||||| ||| |||||||||||| ||||   ||||||||||||||||||    
T  17558861 atgaggcggataaaatcctcaaggacagtgactgtgtcacgcctcaggtt-acataatagtattttgttttgcaggttttccctaatttgatttgtgaag 17558959  T
Q  151 attttgatggag 162  Q
    ||||||||||||    
T  17558960 attttgatggag 17558971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 25 - 181
Target Start/End: Original strand, 21347156 - 21347302
Alignment:
Q  25 gttgtatcttgggaagatgtgtacttatgaggcagataaaatccacaaggacagtgactatgtcacgcctcagatttacataacagtgttttgttttgca 124  Q
    |||||||||||||| ||| ||| |||||||||| |||||||||         ||||||||| ||||||||||| || || ||||||| |   ||||||||    
T  21347156 gttgtatcttgggaggatatgtgcttatgaggcggataaaatc---------agtgactatatcacgcctcaggtt-acttaacagtttgcagttttgca 21347245  T
Q  125 agtttcttctaatttgatttgtgaagattttgatggagccatgtcgacaaccaaatt 181  Q
     ||||| | ||||||||||||||||||||||||| ||||  ||||||||||||||||    
T  21347246 ggtttcctttaatttgatttgtgaagattttgatagagctgtgtcgacaaccaaatt 21347302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 102
Target Start/End: Complemental strand, 1788974 - 1788895
Alignment:
Q  23 ctgttgtatcttgggaagatgtgtacttatgaggcagataaaatccacaaggacagtgactatgtcacgcctcagattta 102  Q
    |||||||||| ||||| ||| ||  |||||||||| |||||||||| |||||||||||||||||||||||||||| ||||    
T  1788974 ctgttgtatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcaggttta 1788895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 107 - 190
Target Start/End: Original strand, 31183821 - 31183904
Alignment:
Q  107 acagtgttttgttttgcaagtttcttctaatttgatttgtgaagattttgatggagccatgtcgacaaccaaattcaataagtt 190  Q
    ||||||| ||| |||||| ||||||||||| ||||||| ||||||||||||||||||  |||| |||||||||||| |||||||    
T  31183821 acagtgtgttgatttgcaggtttcttctaagttgatttatgaagattttgatggagctgtgtctacaaccaaattcgataagtt 31183904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 97
Target Start/End: Complemental strand, 21185371 - 21185322
Alignment:
Q  48 cttatgaggcagataaaatccacaaggacagtgactatgtcacgcctcag 97  Q
    |||||||||| |||||||||| ||||||||||||||||||||||| ||||    
T  21185371 cttatgaggcggataaaatcctcaaggacagtgactatgtcacgcttcag 21185322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 60 - 97
Target Start/End: Original strand, 38676893 - 38676930
Alignment:
Q  60 ataaaatccacaaggacagtgactatgtcacgcctcag 97  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  38676893 ataaaatcctcaaggacagtgactatgtcacgcctcag 38676930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 62 - 97
Target Start/End: Complemental strand, 17088806 - 17088771
Alignment:
Q  62 aaaatccacaaggacagtgactatgtcacgcctcag 97  Q
    ||||||| ||||||||||||||||||||||||||||    
T  17088806 aaaatcctcaaggacagtgactatgtcacgcctcag 17088771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 4e-38; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 71 - 191
Target Start/End: Original strand, 44643542 - 44643661
Alignment:
Q  71 aaggacagtgactatgtcacgcctcagatttacataacagtgttttgttttgcaagtttcttctaatttgatttgtgaagattttgatggagccatgtcg 170  Q
    ||||||||||||||||||||||||||| || || |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  44643542 aaggacagtgactatgtcacgcctcaggtt-acttaacagcgtgttgttttgcaagtttcttctaatttgatttgtgaagattttgatggagctttgtcg 44643640  T
Q  171 acaaccaaattcaataagttc 191  Q
     ||||||||||| ||||||||    
T  44643641 gcaaccaaattcgataagttc 44643661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 23 - 102
Target Start/End: Complemental strand, 6667794 - 6667715
Alignment:
Q  23 ctgttgtatcttgggaagatgtgtacttatgaggcagataaaatccacaaggacagtgactatgtcacgcctcagattta 102  Q
    |||||||||| ||||| ||| ||  |||||||||| |||||||||| |||| ||||||||||||||||||||||| ||||    
T  6667794 ctgttgtatcctgggaggatatgcgcttatgaggcggataaaatcctcaagaacagtgactatgtcacgcctcaggttta 6667715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 51 - 113
Target Start/End: Complemental strand, 20058150 - 20058089
Alignment:
Q  51 atgaggcagataaaatccacaaggacagtgactatgtcacgcctcagatttacataacagtgt 113  Q
    ||||||| |||||||||| ||||||||||||||||||||||||||||  ||||||||||||||    
T  20058150 atgaggcggataaaatcctcaaggacagtgactatgtcacgcctcag-gttacataacagtgt 20058089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 48 - 97
Target Start/End: Complemental strand, 13010583 - 13010534
Alignment:
Q  48 cttatgaggcagataaaatccacaaggacagtgactatgtcacgcctcag 97  Q
    |||||||||| |||||||||| ||||||||||||||||||||||||||||    
T  13010583 cttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcag 13010534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 97
Target Start/End: Original strand, 895488 - 895559
Alignment:
Q  26 ttgtatcttgggaagatgtgtacttatgaggcagataaaatccacaaggacagtgactatgtcacgcctcag 97  Q
    ||||||| ||||| ||| ||  |||||||||| |||||||||| |||||||||||||||||||||| |||||    
T  895488 ttgtatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgactcag 895559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 6671436 - 6671387
Alignment:
Q  53 gaggcagataaaatccacaaggacagtgactatgtcacgcctcagattta 102  Q
    ||||| |||||||||| ||||||| |||||||||||||||||||| ||||    
T  6671436 gaggcggataaaatcctcaaggacggtgactatgtcacgcctcaggttta 6671387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 80; Significance: 2e-37; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 24 - 191
Target Start/End: Complemental strand, 12141726 - 12141560
Alignment:
Q  24 tgttgtatcttgggaagatgtgtacttatgaggcagataaaatccacaaggacagtgactatgtcacgcctcagatttacataacagtgttttgttttgc 123  Q
    ||||||||| ||||| ||| ||  |||||||||| |||||||||| ||||||||||||||||||||||||||||  |||| |||| |||| ||||||| |    
T  12141726 tgttgtatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcag-gttacttaacggtgtgttgttttac 12141628  T
Q  124 aagtttcttctaatttgatttgtgaagattttgatggagccatgtcgacaaccaaattcaataagttc 191  Q
    | ||||||| |||||||||||||||||||||||||| ||   ||||| ||||||||||| ||||||||    
T  12141627 atgtttcttttaatttgatttgtgaagattttgatgaagatgtgtcggcaaccaaattcgataagttc 12141560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 25 - 190
Target Start/End: Complemental strand, 4242642 - 4242478
Alignment:
Q  25 gttgtatcttgggaagatgtgtacttatgaggcagataaaatccacaaggacagtgactatgtcacgcctcagatttacataacagtgttttgttttgca 124  Q
    |||||||| ||||| ||| ||  || ||||| | |||||||||| ||||||||  || ||||||||| ||||| || || |||||||||  |||||||||    
T  4242642 gttgtatcctgggaggatatgcgctcatgagtcggataaaatcctcaaggacaacgattatgtcacgtctcaggtt-acttaacagtgtgctgttttgca 4242544  T
Q  125 agtttcttctaatttgatttgtgaagattttgatggagccatgtcgacaaccaaattcaataagtt 190  Q
     ||||| || ||||||||||| ||||||||||||||||   |||||||||||||||||||||||||    
T  4242543 ggtttcctccaatttgatttgcgaagattttgatggagttgtgtcgacaaccaaattcaataagtt 4242478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 23 - 192
Target Start/End: Complemental strand, 24981237 - 24981070
Alignment:
Q  23 ctgttgtatcttgggaagatgtgtacttatgaggcagataaaatccacaaggacagtgactatgtcacgcctcagatttacataacagtgttttgttttg 122  Q
    |||||||||| ||||| ||| ||| |||||||||| |||||||||| |||||||  |||||||||||||||||||  |||||||| ||| ||||||||||    
T  24981237 ctgttgtatcctgggaggatatgtgcttatgaggcggataaaatcctcaaggacgctgactatgtcacgcctcag-gttacataatagtattttgttttg 24981139  T
Q  123 caagtttcttctaatttgatttgtgaagattttgatggagccatgtcgacaaccaaattcaataagttcc 192  Q
    || |||||  ||||||  |||||||||| ||||| ||||    |||||||||| |||||| |||||||||    
T  24981138 caggtttcccctaattaaatttgtgaaggttttg-tggaattgtgtcgacaactaaattcgataagttcc 24981070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 59 - 190
Target Start/End: Original strand, 51465563 - 51465691
Alignment:
Q  59 gataaaatccacaaggacagtgactatgtcacgcctcagatttacataacagtgttttgttttgcaagtttcttctaatttgatttgtgaagattttgat 158  Q
    |||||||||  ||||||||||||||||||||||||||||| |||| | ||||||| |||||||  | ||||| |||| |||||||||||||||  |||||    
T  51465563 gataaaatctccaaggacagtgactatgtcacgcctcaga-ttactttacagtgtattgttttttaggtttcctctactttgatttgtgaaga--ttgat 51465659  T
Q  159 ggagccatgtcgacaaccaaattcaataagtt 190  Q
    |||||  ||||| ||||||||||| |||||||    
T  51465660 ggagctgtgtcggcaaccaaattcgataagtt 51465691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 9111616 - 9111539
Alignment:
Q  23 ctgttgtatcttgggaagatgtgtacttatgaggcagataaaatccacaaggacagtgactatgtcacgcctcagatt 100  Q
    |||||||||| ||||||||| ||  |||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  9111616 ctgttgtatcctgggaagatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcagatt 9111539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 116 - 192
Target Start/End: Original strand, 1953802 - 1953878
Alignment:
Q  116 tgttttgcaagtttcttctaatttgatttgtgaagattttgatggagccatgtcgacaaccaaattcaataagttcc 192  Q
    ||||||| | ||||| |||| |||||||||||||||||||||||| ||  ||||| ||||||||||| |||||||||    
T  1953802 tgttttgtaggtttcctctactttgatttgtgaagattttgatggggctgtgtcggcaaccaaattcgataagttcc 1953878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 48 - 163
Target Start/End: Original strand, 47580464 - 47580577
Alignment:
Q  48 cttatgaggcagataaaatccacaaggacagtgactatgtcacgcctcagatttacataacagtgttttgttttgcaagtttcttctaatttgatttgtg 147  Q
    ||||||||||||||||||||  |||||||| |||||||||||||||||||  | || ||| |||||  | ||||| | ||||| |||| ||||||||||     
T  47580464 cttatgaggcagataaaatcttcaaggacattgactatgtcacgcctcag-gtaacttaatagtgtgct-ttttgtaggtttcctctactttgatttgtt 47580561  T
Q  148 aagattttgatggagc 163  Q
    ||||||| ||||||||    
T  47580562 aagatttcgatggagc 47580577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 26310463 - 26310515
Alignment:
Q  138 ttgatttgtgaagattttgatggagccatgtcgacaaccaaattcaataagtt 190  Q
    ||||||||||| ||||||||||||||  |||| |||||||||||| |||||||    
T  26310463 ttgatttgtgacgattttgatggagctgtgtcaacaaccaaattcgataagtt 26310515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 23 - 192
Target Start/End: Complemental strand, 19697920 - 19697760
Alignment:
Q  23 ctgttgtatcttgggaagatgtgtacttatgaggcagataaaatccacaaggacagtgactatgtcacgcctcagatttacataacagtgttttgttttg 122  Q
    |||||||||| ||||| ||| ||  |||||||||| |||||||||| |||||||| |||||||||||||||||||       |||  |||||||||||||    
T  19697920 ctgttgtatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacaatgactatgtcacgcctcag-------taa--gtgttttgttttg 19697830  T
Q  123 caagtttcttctaatttgatttgtgaagattttgatggagccatgtcgacaaccaaattcaataagttcc 192  Q
    || |||||  ||||||  |||||||||| ||||||||||| | |||||||||| |||||| |||||||||    
T  19697829 caggtttcccctaattaaatttgtgaaggttttgatggagtcgtgtcgacaactaaattcgataagttcc 19697760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 48 - 163
Target Start/End: Original strand, 15518084 - 15518198
Alignment:
Q  48 cttatgaggcagataaaatccacaaggacagtgactatgtcacgcctcagatttacataacagtgttttgttttgcaagtttcttct-aatttgatttgt 146  Q
    |||||||||| |||| ||||| |||||| ||||||||||||||| ||  |  |||| ||||||||| |||||||||| ||||| | | |||| |||||||    
T  15518084 cttatgaggcggatataatcctcaaggaaagtgactatgtcacgtctagg--ttacttaacagtgtgttgttttgcaggtttcctataaattagatttgt 15518181  T
Q  147 gaagattttgatggagc 163  Q
    |||||||| ||||||||    
T  15518182 gaagatttcgatggagc 15518198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 6591924 - 6591850
Alignment:
Q  23 ctgttgtatcttgggaagatgtgtacttatgaggcagataaaatccacaaggacagtgactatgtcacgcctcag 97  Q
    |||||| ||| ||||| ||| ||  |||||||||| |||||||||| ||||||||||||||| ||||||||||||    
T  6591924 ctgttgcatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactacgtcacgcctcag 6591850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 141 - 190
Target Start/End: Complemental strand, 6591808 - 6591759
Alignment:
Q  141 atttgtgaagattttgatggagccatgtcgacaaccaaattcaataagtt 190  Q
    |||||||||||||||||||||||  ||||| ||||||||||| |||||||    
T  6591808 atttgtgaagattttgatggagctgtgtcggcaaccaaattcgataagtt 6591759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 190
Target Start/End: Original strand, 19976203 - 19976257
Alignment:
Q  136 atttgatttgtgaagattttgatggagccatgtcgacaaccaaattcaataagtt 190  Q
    |||||||||||||||||||||||||||   ||||| |||| |||||| |||||||    
T  19976203 atttgatttgtgaagattttgatggagttttgtcggcaacaaaattcgataagtt 19976257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 23 - 96
Target Start/End: Original strand, 110163 - 110236
Alignment:
Q  23 ctgttgtatcttgggaagatgtgtacttatgaggcagataaaatccacaaggacagtgactatgtcacgcctca 96  Q
    |||||||||||||||| ||| ||   ||||||||| |||||||||| |||||||||||||||||||||||||||    
T  110163 ctgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctca 110236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 23 - 97
Target Start/End: Original strand, 127742 - 127816
Alignment:
Q  23 ctgttgtatcttgggaagatgtgtacttatgaggcagataaaatccacaaggacagtgactatgtcacgcctcag 97  Q
    |||||||||| ||||| ||| ||   || |||||| |||||||||| ||||||||||||||||||||||||||||    
T  127742 ctgttgtatcatgggaggatatgcgtttctgaggcggataaaatcctcaaggacagtgactatgtcacgcctcag 127816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 100 - 191
Target Start/End: Complemental strand, 11634166 - 11634075
Alignment:
Q  100 ttacataacagtgttttgttttgcaagtttcttctaatttgatttgtgaagattttgatggagccatgtcgacaaccaaattcaataagttc 191  Q
    ||||||||||  || |||||||||| ||||| |||||||||||||||||||||||||||| |||  ||||  ||| ||||||| ||||||||    
T  11634166 ttacataacaacgtgttgttttgcaggtttcctctaatttgatttgtgaagattttgatgaagctgtgtctgcaatcaaattcgataagttc 11634075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 97
Target Start/End: Complemental strand, 6835 - 6761
Alignment:
Q  23 ctgttgtatcttgggaagatgtgtacttatgaggcagataaaatccacaaggacagtgactatgtcacgcctcag 97  Q
    |||||||||| ||| | ||| || ||||||||||| |||||||||| ||| ||||||||||||||||||||||||    
T  6835 ctgttgtatcatggaaggatatgcacttatgaggcggataaaatcctcaatgacagtgactatgtcacgcctcag 6761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 23 - 97
Target Start/End: Original strand, 82664 - 82738
Alignment:
Q  23 ctgttgtatcttgggaagatgtgtacttatgaggcagataaaatccacaaggacagtgactatgtcacgcctcag 97  Q
    |||||||||| ||||| ||| ||  |||||||||| |||||||||| |||||| |||||||||||||||||||||    
T  82664 ctgttgtatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggatagtgactatgtcacgcctcag 82738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0293 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0293
Description:

Target: scaffold0293; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 5002 - 4958
Alignment:
Q  20 aacctgttgtatcttgggaagatgtgtacttatgaggcagataaa 64  Q
    ||||||||||||||||||| ||| ||| |||||||||||||||||    
T  5002 aacctgttgtatcttgggaggatatgtgcttatgaggcagataaa 4958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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