View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21629_high_4 (Length: 274)
Name: NF21629_high_4
Description: NF21629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21629_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 8 - 262
Target Start/End: Original strand, 4241172 - 4241426
Alignment:
| Q |
8 |
catcatcaaaccaaacaacctcaatctctctcacttttttcgacatattttggcttaggttccatccaatagaatacatcttattctacaccctcccaaa |
107 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4241172 |
catcatcaaaccaaacaacctcaatctctctcacttttttcgacatattttggctaaggttccatccaatagaatacatcttattctacaccctcccaaa |
4241271 |
T |
|
| Q |
108 |
ttcacgatcagacacttcattcttctttcaaacaattgttccaaatcttaaatcttcactttctttgaccctccaacactttcttcctttagccggtaac |
207 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4241272 |
ttcacaatcagacacttcattcttctttcaaacaattgttccaaatcttaaatcttcactttctttgaccctccaacactttcttcctttagccggtaac |
4241371 |
T |
|
| Q |
208 |
atcgtttgggattttgaatcacaaaacccaaaaatacaatacacaccaaatgatg |
262 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4241372 |
atcgtttgggattttgaatcacaaaacccaaaaatacaatacacaccaaatgatg |
4241426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 20 - 216
Target Start/End: Original strand, 4250424 - 4250620
Alignment:
| Q |
20 |
aaacaacctcaatctctctcacttttttcgacatattttggcttaggttccatccaatagaatacatcttattctacaccctcccaaattcacgatcaga |
119 |
Q |
| |
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|||| ||||||||| |||| ||||| ||||||||||||||||| |||||||||||| ||||| | || |||||||||||||||||||||| |||| | |
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| T |
4250424 |
aaaccacctcaatccctcttactttcttcgacatattttggctaaggttccatccagtagaacgagttttcttctacaccctcccaaattcacaatcaca |
4250523 |
T |
|
| Q |
120 |
cacttcattcttctttcaaacaattgttccaaatcttaaatcttcactttctttgaccctccaacactttcttcctttagccggtaacatcgtttgg |
216 |
Q |
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| T |
4250524 |
cccttctttcttctttcaaacgattgttccaaatctcaaatcatcactctctttaaccctccaacattttctccctttagctggtaacatcgtttgg |
4250620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 8 - 216
Target Start/End: Original strand, 4195635 - 4195843
Alignment:
| Q |
8 |
catcatcaaaccaaacaacctcaatctctctcacttttttcgacatattttggcttaggttccatccaatagaatacatcttattctacaccctcccaaa |
107 |
Q |
| |
|
||||||||| ||||| ||| ||| | |||| |||| || |||||||||||||||||||||||||| ||||| | || ||||||||||||||||| |
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| T |
4195635 |
catcatcaacccaaaaaacaacaacccctcttacttactttgacatattttggcttaggttccatccggtagaacgtgttttcttctacaccctcccaaa |
4195734 |
T |
|
| Q |
108 |
ttcacgatcagacacttcattcttctttcaaacaattgttccaaatcttaaatcttcactttctttgaccctccaacactttcttcctttagccggtaac |
207 |
Q |
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||||| ||| ||||||| ||||| || |||| | ||||||||| ||| ||||||||| | ||||| |||||||||||||||||||||||||| ||||| |
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| T |
4195735 |
ttcacattcacacacttctttctttttccaaaaacttgttccaattctcaaatcttcattctctttaaccctccaacactttcttcctttagctggtaaa |
4195834 |
T |
|
| Q |
208 |
atcgtttgg |
216 |
Q |
| |
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||||||||| |
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| T |
4195835 |
atcgtttgg |
4195843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 8 - 262
Target Start/End: Original strand, 4188746 - 4189000
Alignment:
| Q |
8 |
catcatcaaaccaaacaacctcaatctctctcacttttttcgacatattttggcttaggttccatccaatagaatacatcttattctacaccctcccaaa |
107 |
Q |
| |
|
||||||||| |||||| || |||| || ||||||| ||||||||||||||| | | ||||||||| |||||| ||||| || |||||||||||||| |
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| T |
4188746 |
catcatcaacccaaactacaacaattcctttcactttcttcgacatattttggataaagttccatcctatagaacgaatcttcttttacaccctcccaaa |
4188845 |
T |
|
| Q |
108 |
ttcacgatcagacacttcattcttctttcaaacaattgttccaaatcttaaatcttcactttctttgaccctccaacactttcttcctttagccggtaac |
207 |
Q |
| |
|
||||| |||| || |||| ||||||||||||| | | ||||||| ||| | ||| ||||| ||||| ||||||||||||||||| |||||||| ||||| |
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| T |
4188846 |
ttcacaatcacacccttctttcttctttcaaaaactagttccaattctcagatcatcactctctttaaccctccaacactttctccctttagctggtaaa |
4188945 |
T |
|
| Q |
208 |
atcgtttgggattttgaatcacaaaacccaaaaatacaatacacaccaaatgatg |
262 |
Q |
| |
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|| |||||| | ||||| ||| | |||||||| || |||||| ||||||||| |
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| T |
4188946 |
attgtttggccatcagaatctcaacaaccaaaaatccagtacacaacaaatgatg |
4189000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 49 - 262
Target Start/End: Original strand, 4233425 - 4233638
Alignment:
| Q |
49 |
gacatattttggcttaggttccatccaatagaatacatcttattctacaccctcccaaattcacgatcagacacttcattcttctttcaaacaattgttc |
148 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||| | || |||||| ||||||||||||||| ||| || |||| |||||||| | | |||||| |
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| T |
4233425 |
gacatattttggctaaggttccatccagtagaacgtgttttcttctacgccctcccaaattcacattcacacccttctttcttcttcaagaagcttgttc |
4233524 |
T |
|
| Q |
149 |
caaatcttaaatcttcactttctttgaccctccaacactttcttcctttagccggtaacatcgtttgggattttgaatcacaaaacccaaaaatacaata |
248 |
Q |
| |
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||| ||| ||||||||||| ||||| |||||| | ||||||| |||||||| ||||||||||||||| ||| ||||| ||| | |||| ||| ||||| |
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| T |
4233525 |
caattctcaaatcttcactctctttaaccctcaaggactttctccctttagctggtaacatcgtttggcctttagaatctcaagaaccaataatccaata |
4233624 |
T |
|
| Q |
249 |
cacaccaaatgatg |
262 |
Q |
| |
|
|| |||||||||| |
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| T |
4233625 |
tactccaaatgatg |
4233638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 91 - 216
Target Start/End: Original strand, 4102418 - 4102543
Alignment:
| Q |
91 |
ttctacaccctcccaaattcacgatcagacacttcattcttctttcaaacaattgttccaaatcttaaatcttcactttctttgaccctccaacactttc |
190 |
Q |
| |
|
|||||||||||||||||||||| |||| || |||| | ||| ||| ||| |||||||||| || |||| |||||| ||||| ||||||||| |||| | |
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| T |
4102418 |
ttctacaccctcccaaattcacaatcacacccttcttacttttttgaaaaccttgttccaaaactcaaatattcactctctttaaccctccaaaacttcc |
4102517 |
T |
|
| Q |
191 |
ttcctttagccggtaacatcgtttgg |
216 |
Q |
| |
|
| |||||||| ||||||||||||||| |
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| T |
4102518 |
tccctttagctggtaacatcgtttgg |
4102543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 56 - 216
Target Start/End: Original strand, 4121860 - 4122020
Alignment:
| Q |
56 |
tttggcttaggttccatccaatagaatacatcttattctacaccctcccaaattcacgatcagacacttcattcttctttcaaacaattgttccaaatct |
155 |
Q |
| |
|
||||||| ||||| |||||| | ||| ||||| |||||||||||||||||||||| |||| || |||| ||||| || ||| |||||||||| || |
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| T |
4121860 |
tttggctaaggtttcatccagttgaacgtatcttcttctacaccctcccaaattcacaatcacacccttctttctttgttgaaaaccttgttccaaaact |
4121959 |
T |
|
| Q |
156 |
taaatcttcactttctttgaccctccaacactttcttcctttagccggtaacatcgtttgg |
216 |
Q |
| |
|
||||||||||| ||||| ||||||||| | || | |||||||| ||||||||||||||| |
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|
| T |
4121960 |
caaatcttcactctctttaaccctccaaaaattcccacctttagctggtaacatcgtttgg |
4122020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 91 - 206
Target Start/End: Original strand, 4191969 - 4192084
Alignment:
| Q |
91 |
ttctacaccctcccaaattcacgatcagacacttcattcttctttcaaacaattgttccaaatcttaaatcttcactttctttgaccctccaacactttc |
190 |
Q |
| |
|
|||||||||||||||| ||||| |||| || |||| |||||||| |||| ||||| ||| ||| |||||||||| ||||| |||||| ||||||||| |
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| T |
4191969 |
ttctacaccctcccaagttcacaatcacacccttctttcttcttccaaaagcttgttacaattctcaaatcttcaccctctttaaccctcaaacactttc |
4192068 |
T |
|
| Q |
191 |
ttcctttagccggtaa |
206 |
Q |
| |
|
| |||||||| ||||| |
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|
| T |
4192069 |
tccctttagctggtaa |
4192084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 216
Target Start/End: Original strand, 4094922 - 4094995
Alignment:
| Q |
143 |
ttgttccaaatcttaaatcttcactttctttgaccctccaacactttcttcctttagccggtaacatcgtttgg |
216 |
Q |
| |
|
|||||||||| || ||||||||||| ||||| || || |||||||| || |||||||| ||||||||||||||| |
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|
| T |
4094922 |
ttgttccaaaactcaaatcttcactctctttaactctacaacacttcctccctttagctggtaacatcgtttgg |
4094995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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