View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21629_low_1 (Length: 419)
Name: NF21629_low_1
Description: NF21629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21629_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 10 - 402
Target Start/End: Original strand, 25302062 - 25302454
Alignment:
| Q |
10 |
acatcatcactgctaaaccctatgtattacagaaggaaaaccaaaccaccttaaatttcccatgattcattcacccttggttttccctttgagcatcctt |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
25302062 |
acatcatcactgctaaaccctatgtattacagaaggaaaaccaaaccaccttaaatttcccatgattcattcacccttggttttccctctgagcatcctt |
25302161 |
T |
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| Q |
110 |
atcaaaacccaaagacctaaccttgagctgaagctcagcaacagcaacaaaaaagttgagaacctgagctggtttcagtatctgcacaactctcaaagct |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25302162 |
atcaaaacccaaagacctaaccttgagctgaagctcagcaacagcaacaaaaaagttgagaacctgagctggtttcagtatctgcacaactctcaaagct |
25302261 |
T |
|
| Q |
210 |
gtctcagtcctcaaagcatcagcatttgtcaccaaattctccaatgtttccttgaatgaactagaaactgtaccctcttctgccatgaatgacctactca |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25302262 |
gtctcagtcctcaaagcatcagcatttgtcaccaaattctccaatgtttccttgaatgaactagaaactgtaccctcttctgccatgaatgacctactca |
25302361 |
T |
|
| Q |
310 |
aacacactcttccatggcttctaacattgtcaagaaccggtggcgccgccatactctcatgaaccttagccaattcatcattgagttctctct |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
25302362 |
aacacactcttccatggcttctaacattgtcaagaaccggtggcgccgccatactctcatgaaccttagccaattcatcatttagttctctct |
25302454 |
T |
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