View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21629_low_4 (Length: 282)
Name: NF21629_low_4
Description: NF21629
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21629_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 12 - 265
Target Start/End: Complemental strand, 45568217 - 45567964
Alignment:
| Q |
12 |
atgaagacagaggattgttagatacccttaatttagttttaatttgttttttgtacatttatagagtaattgcttgcaccgatacttgccacaatttttc |
111 |
Q |
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| T |
45568217 |
atgaagacagaggattgttagatacccttaatttagttttaattagttttttgtacatttatagagtaattgcttgcaccgatacttgccacaatttttc |
45568118 |
T |
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| Q |
112 |
attatccctatttgagtcttggaggatagtgttaatttaatcaataagaaattatttgaaaagcaaatggaccgctgagaagatgcagnnnnnnnnncct |
211 |
Q |
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| T |
45568117 |
attatccctatttgagtcttggaggatagtgttaatttaatcaataagaaattatttgaaaagcaaatggaccgctgagaagatgcagtttttttttcct |
45568018 |
T |
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| Q |
212 |
cgtgtcttaattggttaattaacaggtcttaaattgtcttaacggaccagttat |
265 |
Q |
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| T |
45568017 |
cgtgtcttaattggttaattaacaggtcttaaattgtcttaacggaccagttat |
45567964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 80 - 265
Target Start/End: Original strand, 35817131 - 35817316
Alignment:
| Q |
80 |
attgcttgcaccgatacttgccacaatttttcattatccctatttgagtcttggaggatagtgttaatttaatcaataagaaattatttgaaaagcaaat |
179 |
Q |
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| T |
35817131 |
attgcttgcaccgatacttgccacaatttttcattatccctatttgagtcttggatgatagtgttaatttaatcgatgagaaattatttgaaaagcaaat |
35817230 |
T |
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| Q |
180 |
ggaccgctgagaagatgca-gnnnnnnnnncctcgtgtcttaattggttaattaacaggtcttaaattgtcttaacggaccagttat |
265 |
Q |
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| T |
35817231 |
ggaccactgggaagatgcaggtttttttttcctcgtgtcttaaatggtt-attaacaggtcttaaattgtctcaatggaccagttat |
35817316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 92 - 244
Target Start/End: Complemental strand, 45093218 - 45093068
Alignment:
| Q |
92 |
gatacttgccacaatttttcattatccctatttgagtcttggaggatagtgttaatttaatcaataagaaattatttgaaaagcaaatggaccgctgaga |
191 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||| ||||| |||||| |||||| | |||||| ||||||||||||| |||||| ||||| |
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| T |
45093218 |
gatacttgccacaatttttcactatccctatttgagtcttggatgatag-gttaatctaatcattgagaaataatttgaaaagcaactggaccattgaga |
45093120 |
T |
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| Q |
192 |
agatgcagnnnnnnnnncctcgtgtcttaattggttaattaacaggtcttaaa |
244 |
Q |
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| T |
45093119 |
aaatgca-agtttttttcctcgtgtattaaatggttaattaacaggtcttaaa |
45093068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 35816823 - 35816864
Alignment:
| Q |
19 |
cagaggattgttagatacccttaatttagttttaatttgttt |
60 |
Q |
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| T |
35816823 |
cagaggattgttagatacccttaatttagttttaattagttt |
35816864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 60
Target Start/End: Original strand, 45177309 - 45177357
Alignment:
| Q |
12 |
atgaagacagaggattgttagatacccttaatttagttttaatttgttt |
60 |
Q |
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|||||| |||||||||||||||| ||||||||||| |||||||| |||| |
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| T |
45177309 |
atgaaggcagaggattgttagatgcccttaatttacttttaattagttt |
45177357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 60
Target Start/End: Complemental strand, 45093527 - 45093489
Alignment:
| Q |
22 |
aggattgttagatacccttaatttagttttaatttgttt |
60 |
Q |
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| T |
45093527 |
aggattgttagatacccttcatttagttttaattagttt |
45093489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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