View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2162_high_2 (Length: 359)
Name: NF2162_high_2
Description: NF2162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2162_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 12 - 351
Target Start/End: Original strand, 2080054 - 2080392
Alignment:
| Q |
12 |
tcatcaaccgttttaaatacttcgccacagttatcctgaaattctgtcgcaattccaacagctgcaacacggttttcaaaactcattggaagatctgcac |
111 |
Q |
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| T |
2080054 |
tcatcaaccgttttaaatacttcgccacagttatcctgaaattctgtcgcaattccaacagctgcaacacggttttcaaaactcattggaagatctgcac |
2080153 |
T |
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| Q |
112 |
tgcagaggggtgtataattagaaataagagagatggtcaaattttgataactcatctaattaactaagtattaggtcagggnnnnnnnaaccactcaatc |
211 |
Q |
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| T |
2080154 |
tgcagaggggtgtataattagaaataagagagatggtcaaattttgataactcatctaattaactaagtattaggtcagggtttttttaaccactcaatc |
2080253 |
T |
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| Q |
212 |
attttttattagtttataaaattatgacggcttaaaaagttcttcaattggtttttcttaccatgtcagatgccaaattgcaaatgctaaaagtaaaaat |
311 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2080254 |
atttttta-tagtttataaaattatgacggcttaaaaagttcttcaattggtttttcttaccatgtcagatgccaaattgtaaatgctaaaagtaaaaat |
2080352 |
T |
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| Q |
312 |
tggcaatgaaccagatgttgtttccgggaggagcagagag |
351 |
Q |
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|||||||||||||| |||||||||||||||| | |||||| |
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| T |
2080353 |
tggcaatgaaccagctgttgtttccgggagggggagagag |
2080392 |
T |
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