View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2162_low_1 (Length: 616)

Name: NF2162_low_1
Description: NF2162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2162_low_1
NF2162_low_1
[»] chr4 (10 HSPs)
chr4 (285-599)||(8979548-8979862)
chr4 (4-290)||(8985553-8985840)
chr4 (403-598)||(9031063-9031258)
chr4 (466-598)||(8999929-9000061)
chr4 (465-599)||(8929167-8929301)
chr4 (435-598)||(8955213-8955376)
chr4 (405-599)||(8965957-8966152)
chr4 (424-596)||(9014008-9014181)
chr4 (500-598)||(8900375-8900473)
chr4 (500-598)||(8914280-8914378)
[»] chr5 (2 HSPs)
chr5 (500-598)||(20073834-20073932)
chr5 (488-592)||(9400060-9400164)
[»] chr1 (1 HSPs)
chr1 (96-196)||(1324591-1324689)


Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 285 - 599
Target Start/End: Complemental strand, 8979862 - 8979548
Alignment:
Q  285 attttttattcaaatcatttacattcgaccactttacaaattcaaagaggattcttcttgtattacaaattcaaagtaactgattttctcttttttcaaa 384  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8979862 attttttattcaaatcatttacattcgaccactttacaaattcaaagatgattcttcttgtattacaaattcaaagtaactgattttctcttttttcaaa 8979763  T
Q  385 ttcaaatagtagagcaacataaaaagcttaataaacagtatattaaacatgaaactaacaaagttaacataaagggatacatctaaatagggatattggg 484  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8979762 ttcaaatagtagagcaacataaaaagcttaataaacagtatattaaacatgaaactaacaaagttaacataaagggatacatctaaatagggatattggg 8979663  T
Q  485 aacaaggtaaagaggattcttcttgtgctgagtgatccctggcaacatttcggtatcaatatcttccttttccaaaccttgtggcaatttccaatcaaaa 584  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  8979662 aacaaggtaaagaggattcttcttgtgttgagtgatccctggcaacatttcggtatcaatatcttccttttctaaaccttgtggcaatttccaatcaaaa 8979563  T
Q  585 gaatagagaagatta 599  Q
    |||||||||||||||    
T  8979562 gaatagagaagatta 8979548  T

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Target: chr4; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 4 - 290
Target Start/End: Complemental strand, 8985840 - 8985553
Alignment:
Q  4 ctctgtcgaccacattggtttcattaactttatcact--ccaaatcatattatttctttgcttccatatactctaaaggatacagnnnnnnngg-catca 100  Q
    ||||||| |||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||       || |||||    
T  8985840 ctctgtccaccacattggcttcattaactttatcactttccaaatcatattatttctttgcttccatatactctaaaggatacagaaaaaaagggcatca 8985741  T
Q  101 aacaagccaatcttttttatgtaacctttgatctaccgtccatctaaattacgaaaaaggcttccacacgctgctatatcgctatatcccccttgttcca 200  Q
    ||||||||||||||||||||||||||||||||| | || |||||||||||||| |||||||||| |||||||||||||||||||| ||||| ||||||||    
T  8985740 aacaagccaatcttttttatgtaacctttgatccatcgcccatctaaattacgtaaaaggcttc-acacgctgctatatcgctatttcccc-ttgttcca 8985643  T
Q  201 actcaagaagcagattatttacattctaagtattttaaattatgaaacaagtttaatttcaagacttttttaaaatcaaacgtgattttt 290  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  8985642 actcaagaagcagattatttacattctaagtattttaatttatgaaacaagtttaatttcaagacatttttaaaatcaaacgtgattttt 8985553  T

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Target: chr4; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 403 - 598
Target Start/End: Complemental strand, 9031258 - 9031063
Alignment:
Q  403 ataaaaagcttaataaacagtatattaaacatgaaactaacaaagttaac-ataaagggatacatctaaatagggatattgggaacaaggtaaagaggat 501  Q
    ||||||||||| ||||||| |||| |||||| ||||| |||| |||  || |||||||||| |||||| |||||||| || | ||||||| |||||||||    
T  9031258 ataaaaagcttgataaaca-tataataaacaagaaaccaacatagtatactataaagggatgcatctacatagggatcttagcaacaaggcaaagaggat 9031160  T
Q  502 tcttcttgtgctgagtgatccctggcaacatttcggtatcaatatcttccttttccaaaccttgtggcaatttccaatcaaaagaatagagaagatt 598  Q
    |||||||||| |||||||||||||||| ||||   |||||||||||||||||| |||| || | ||| |||||||||||||| ||||| ||||||||    
T  9031159 tcttcttgtgttgagtgatccctggcagcattgatgtatcaatatcttcctttaccaacccatctggtaatttccaatcaaatgaataaagaagatt 9031063  T

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Target: chr4; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 466 - 598
Target Start/End: Original strand, 8999929 - 9000061
Alignment:
Q  466 tctaaatagggatattgggaacaaggtaaagaggattcttcttgtgctgagtgatccctggcaacatttcggtatcaatatcttccttttccaaaccttg 565  Q
    |||| |||||||| |||| ||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |    || ||    
T  8999929 tctacatagggatcttggcaacaaggcaaagaggattcttcttgtgttgagtgatccctggcaacatttcagtatcaatatcttcctttactgttccatg 9000028  T
Q  566 tggcaatttccaatcaaaagaatagagaagatt 598  Q
    |||||||||||||||||| ||||| ||||||||    
T  9000029 tggcaatttccaatcaaatgaataaagaagatt 9000061  T

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Target: chr4; HSP #5
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 465 - 599
Target Start/End: Original strand, 8929167 - 8929301
Alignment:
Q  465 atctaaatagggatattgggaacaaggtaaagaggattcttcttgtgctgagtgatccctggcaacatttcggtatcaatatcttccttttccaaacctt 564  Q
    ||||| |||||||  ||||  |||||| | ||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |||| || |    
T  8929167 atctacatagggactttggctacaaggcagagatgattcttcttgtgttgagtgatccctggcaacatttctgtatcaatatcttcctttaccaacccat 8929266  T
Q  565 gtggcaatttccaatcaaaagaatagagaagatta 599  Q
    |||| |||| ||||||||| |||||||||||||||    
T  8929267 gtggtaattcccaatcaaatgaatagagaagatta 8929301  T

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Target: chr4; HSP #6
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 435 - 598
Target Start/End: Complemental strand, 8955376 - 8955213
Alignment:
Q  435 gaaactaacaaagttaacataaagggatacatctaaatagggatattgggaacaaggtaaagaggattcttcttgtgctgagtgatccctggcaacattt 534  Q
    ||||| |||| |||||| ||||||||||  |||||  ||||||| ||||  | |||||||||||||||||||||||| |||||||||||||||| |||||    
T  8955376 gaaaccaacatagttaatataaagggatgtatctacttagggatcttggctataaggtaaagaggattcttcttgtgttgagtgatccctggcagcattt 8955277  T
Q  535 cggtatcaatatcttccttttccaaaccttgtggcaatttccaatcaaaagaatagagaagatt 598  Q
    | ||||||| |||||| ||| |||| || | ||| ||  |||||||||| ||||||||||||||    
T  8955276 ctgtatcaacatcttcttttaccaacccatctggtaagctccaatcaaatgaatagagaagatt 8955213  T

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Target: chr4; HSP #7
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 405 - 599
Target Start/End: Original strand, 8965957 - 8966152
Alignment:
Q  405 aaaaagcttaataaaca--gtatattaaacatgaaactaacaaagttaacataaagggatacatctaaatagggatattgggaacaaggtaaagaggatt 502  Q
    |||||| ||||||||||  | |||| ||||| |||||||| | |||| | ||||||||||  ||||| ||||  || |||| ||| ||  | ||||||||    
T  8965957 aaaaagtttaataaacatagcatatcaaacaagaaactaa-agagttgaaataaagggatgaatctacatagtaatcttggcaaccagacagagaggatt 8966055  T
Q  503 cttcttgtgctgagtgatccctggcaacatttcggtatcaatatcttccttttccaaaccttgtggcaatttccaatcaaaagaatagagaagatta 599  Q
    ||||||||| ||||||||||| |||||| |||| |||||||||||||||||| |||| || ||||| || ||||||||||||||||| |||||||||    
T  8966056 cttcttgtgttgagtgatcccaggcaacgtttcagtatcaatatcttcctttaccaatccatgtggtaacttccaatcaaaagaataaagaagatta 8966152  T

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Target: chr4; HSP #8
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 424 - 596
Target Start/End: Complemental strand, 9014181 - 9014008
Alignment:
Q  424 atattaaacatgaaactaacaaagttaacataaaggg-atacatctaaatagggatattgggaacaaggtaaagaggattcttcttgtgctgagtgatcc 522  Q
    |||||||||||||||| |||| ||| |  |||||||  || | |||| |||||||| |||| ||||||| ||||||||||||||||||| ||||||||||    
T  9014181 atattaaacatgaaaccaacatagtcacgataaaggtcatgcgtctacatagggatcttggcaacaaggcaaagaggattcttcttgtgttgagtgatcc 9014082  T
Q  523 ctggcaacatttcggtatcaatatcttccttttccaaaccttgtggcaatttccaatcaaaagaatagagaaga 596  Q
    ||||||||||||| ||||||||||||| ||||      || |||||||||||||||| ||| ||||| ||||||    
T  9014081 ctggcaacatttcagtatcaatatctttctttagtgttccatgtggcaatttccaattaaatgaataaagaaga 9014008  T

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Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 500 - 598
Target Start/End: Original strand, 8900375 - 8900473
Alignment:
Q  500 attcttcttgtgctgagtgatccctggcaacatttcggtatcaatatcttccttttccaaaccttgtggcaatttccaatcaaaagaatagagaagatt 598  Q
    |||||||||||| |||||||  |||||| || |||| |||||||||||||||||| ||| ||| | ||| |||| ||||||||| || || ||||||||    
T  8900375 attcttcttgtgttgagtgagtcctggccacctttcagtatcaatatcttcctttaccataccatctggtaattcccaatcaaaggagtatagaagatt 8900473  T

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Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 500 - 598
Target Start/End: Original strand, 8914280 - 8914378
Alignment:
Q  500 attcttcttgtgctgagtgatccctggcaacatttcggtatcaatatcttccttttccaaaccttgtggcaatttccaatcaaaagaatagagaagatt 598  Q
    |||||||||||| |||||||  |||||| || |||| ||||||||||||||||||  ||  || | ||| |||| ||||||||| ||||| ||||||||    
T  8914280 attcttcttgtgttgagtgagtcctggccacctttcagtatcaatatcttcctttatcaggccatctggtaattcccaatcaaaggaatatagaagatt 8914378  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 500 - 598
Target Start/End: Original strand, 20073834 - 20073932
Alignment:
Q  500 attcttcttgtgctgagtgatccctggcaacatttcggtatcaatatcttccttttccaaaccttgtggcaatttccaatcaaaagaatagagaagatt 598  Q
    |||||| |||||||||||||  ||||||||| |||| |||||||||||||||||| | | ||| | ||| |||| ||||||||| ||||| ||||||||    
T  20073834 attctttttgtgctgagtgagtcctggcaacctttcagtatcaatatcttcctttactagaccatctggtaattcccaatcaaaggaatatagaagatt 20073932  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 488 - 592
Target Start/End: Original strand, 9400060 - 9400164
Alignment:
Q  488 aaggtaaagaggattcttcttgtgctgagtgatccctggcaacatttcggtatcaatatcttccttttccaaaccttgtggcaatttccaatcaaaagaa 587  Q
    |||| ||||| | ||||||||||| ||||  |||||||||||| ||||   ||||| |||||||||  |||| || |||||||||| ||||||||| |||    
T  9400060 aaggcaaagatggttcttcttgtgttgagcaatccctggcaacctttcaaaatcaacatcttccttaaccaacccatgtggcaattcccaatcaaaggaa 9400159  T
Q  588 tagag 592  Q
    |||||    
T  9400160 tagag 9400164  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 96 - 196
Target Start/End: Complemental strand, 1324689 - 1324591
Alignment:
Q  96 catcaaacaagccaatcttttttatgtaacctttgatctaccgtccatctaaattacgaaaaaggcttccacacgctgctatatcgctatatcccccttg 195  Q
    ||||| || |||||||||| || ||||||| ||||||| ||||||||||| ||||  | ||||| ||||||||| || |||| ||| ||| |||||||||    
T  1324689 catcacacgagccaatcttcttaatgtaacatttgatccaccgtccatctgaattgtg-aaaagacttccacaccctactatgtcgttat-tcccccttg 1324592  T

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