View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21630_high_1 (Length: 614)
Name: NF21630_high_1
Description: NF21630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21630_high_1 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: scaffold0016 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 9 - 538
Target Start/End: Original strand, 43067 - 43600
Alignment:
| Q |
9 |
agcagagacaacaccata----gccttcttaaccctctctttggttctcaaacttattgccaactgattaatcaaagttatgaaagaagagactcactct |
104 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43067 |
agcagagacaacaccatatttggccttcttaaccctctctttggttctcaaacttattgccaactgattaatcaaagttatgaaagaagagactcactct |
43166 |
T |
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| Q |
105 |
agaagcaaagagcatgaacaacaacataattagaacaaagacacgaacatgctatagcaaaatatagtagataaacaatgataaatgagtcatagcatcg |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43167 |
agaagcaaagagcatgaacaacaacataattagaacaaagacacgaacatgctatagcaaaatatagtagataaacaatgataaatgagtcatagcatcg |
43266 |
T |
|
| Q |
205 |
tacaaatcttgtgattttgaatatggctcttccaagatgttgtagaacaacacaaaacgatcatgtaaagttcttgtctaaacttcacatttggatgcac |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43267 |
tacaaatcttgtgattttgaatatggctcttccaagatgttgtagaacaacacaaaacgatcatgtaaagttcttgtctaaacttcacatttgggtgcac |
43366 |
T |
|
| Q |
305 |
taaaatgttaaatgaaatgagtgcataatgtgaaaatatacaaaaattggatattctgcacacaacaataaaagaagaagactatttttagggaacaaaa |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43367 |
taaaatgttaaatgaaatgagtgcataatgtgaaaatatacaaaaattggatattctgcacacaacaataaaagaagaagactatttttagggaacaaaa |
43466 |
T |
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| Q |
405 |
caatgaatcttgtgcttgactctaaataaaagaaccagcatattgtaaacggaatgagctggtaaaatgaagttatatagtattgtnnnnnnncaccatt |
504 |
Q |
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| T |
43467 |
caatgaatcttgtgcttgactctaaataaaagaaccagcatattgtaaacggaatgagctggtaaaatgaagttatatagtattgtaaaaaaacaccatt |
43566 |
T |
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| Q |
505 |
aaaatcattaaagaggcacacctaagatcatcta |
538 |
Q |
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| T |
43567 |
aaaatcattaaagaggcacacctaagatcatcta |
43600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 151; Significance: 1e-79; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 321 - 538
Target Start/End: Original strand, 2681858 - 2682072
Alignment:
| Q |
321 |
atgagtgcataatgtgaaaatatacaaaaattggatattctgcacacaacaataaaagaagaagactatttttagggaacaaaacaatgaatcttgtgct |
420 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||| |
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| T |
2681858 |
atgagtgtgtaatgtgaaaatatacaaaaattggatattctgcacacaacaataaaagaata---ctatttttatggaacaaaacaatgaatcttgtgct |
2681954 |
T |
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| Q |
421 |
tgactctaaataaaagaaccagcatattgtaaacggaatgagctggtaaaatgaagttatatagtattgtnnnnnnncaccattaaaatcattaaagagg |
520 |
Q |
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| T |
2681955 |
tgactctaaacaaaagaaccaacatattgtaaacagaatgagctggtaaaatgaagttatatagtattgtaaaaaaacaccattaaaatcattaaagagg |
2682054 |
T |
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| Q |
521 |
cacacctaagatcatcta |
538 |
Q |
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||||| |||||||||||| |
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| T |
2682055 |
cacacataagatcatcta |
2682072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 151; Significance: 1e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 321 - 538
Target Start/End: Complemental strand, 5481453 - 5481239
Alignment:
| Q |
321 |
atgagtgcataatgtgaaaatatacaaaaattggatattctgcacacaacaataaaagaagaagactatttttagggaacaaaacaatgaatcttgtgct |
420 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||| |
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| T |
5481453 |
atgagtgtgtaatgtgaaaatatacaaaaattggatattctgcacacaacaataaaagaata---ctatttttatggaacaaaacaatgaatcttgtgct |
5481357 |
T |
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| Q |
421 |
tgactctaaataaaagaaccagcatattgtaaacggaatgagctggtaaaatgaagttatatagtattgtnnnnnnncaccattaaaatcattaaagagg |
520 |
Q |
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|||||||||| |||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
5481356 |
tgactctaaacaaaagaaccaacatattgtaaacagaatgagctggtaaaatgaagttatatagtattgtaaaaaaacaccattaaaatcattaaagagg |
5481257 |
T |
|
| Q |
521 |
cacacctaagatcatcta |
538 |
Q |
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||||| |||||||||||| |
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| T |
5481256 |
cacacataagatcatcta |
5481239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 27 - 74
Target Start/End: Original strand, 26544537 - 26544584
Alignment:
| Q |
27 |
gccttcttaaccctctctttggttctcaaacttattgccaactgatta |
74 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||||| |
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| T |
26544537 |
gccttcttaaccctctctttggttctcaaacttattccaaactgatta |
26544584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 151; Significance: 1e-79; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 321 - 538
Target Start/End: Original strand, 45005284 - 45005498
Alignment:
| Q |
321 |
atgagtgcataatgtgaaaatatacaaaaattggatattctgcacacaacaataaaagaagaagactatttttagggaacaaaacaatgaatcttgtgct |
420 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||| |
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| T |
45005284 |
atgagtgtgtaatgtgaaaatatacaaaaattggatattctgcacacaacaataaaagaata---ctatttttatggaacaaaacaatgaatcttgtgct |
45005380 |
T |
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| Q |
421 |
tgactctaaataaaagaaccagcatattgtaaacggaatgagctggtaaaatgaagttatatagtattgtnnnnnnncaccattaaaatcattaaagagg |
520 |
Q |
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| T |
45005381 |
tgactctaaacaaaagaaccaacatattgtaaacagaatgagctggtaaaatgaagttatatagtattgtaaaaaaacaccattaaaatcattaaagagg |
45005480 |
T |
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| Q |
521 |
cacacctaagatcatcta |
538 |
Q |
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||||| |||||||||||| |
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| T |
45005481 |
cacacataagatcatcta |
45005498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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