View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21630_high_2 (Length: 523)
Name: NF21630_high_2
Description: NF21630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21630_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 17 - 312
Target Start/End: Complemental strand, 42759922 - 42759627
Alignment:
| Q |
17 |
aaacctttagtttttcatttagtttgtatttgtatttcaaaattccccttgcttgaatagagcacaacagtaattaagggctattgaactttcgttttga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||| |
|
|
| T |
42759922 |
aaacctttagtttttcatttagtttgtatttgtatttcgaaattccccttgcttgaatagagcacaacattagttaagggttattgaactttcgttttga |
42759823 |
T |
|
| Q |
117 |
aaactaacacatctatccatatgtaatcctctttttcccatgcatattaacacaatcatgcaccttattccctctgtatatatatacatgcctgactgtt |
216 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
42759822 |
aaaccaacacatctatccatctgtaatcctctttttcccatgcatattaacacaatcatgcactttattccctctgtatatatatacatgcctgactgtt |
42759723 |
T |
|
| Q |
217 |
tgcattttactcatctgtttctaaactttcttcaatcttagcagttaaacttggtgtgcatggagctgtgatttgctggagttaatttgatggtcg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42759722 |
tgcattttactcatctgtttctaaactttcttcaatcttagcagttaaacttggtgtgcatggagctgtgatttgctggagttaatttgatggtcg |
42759627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 397 - 507
Target Start/End: Complemental strand, 42759548 - 42759437
Alignment:
| Q |
397 |
cgttaaggttgccgttgaagtttgccaaatctattttgttcaagactatttctgtttaa-ttaagtatccagtttcatttctattccatttatatttttc |
495 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
42759548 |
cgttaaggttgttgttgaagtttgccaaatctattttgttcaagactatttctgtttaatttaagtatctagtttcatttcaattccatttatatttttc |
42759449 |
T |
|
| Q |
496 |
cctaagtaattc |
507 |
Q |
| |
|
|||||||||||| |
|
|
| T |
42759448 |
cctaagtaattc |
42759437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 17 - 299
Target Start/End: Original strand, 1401926 - 1402208
Alignment:
| Q |
17 |
aaacctttagtttttcatttagtttgtatttgtatttcaaaattccccttgcttgaatagagcacaacagtaattaagggctattgaactttcgttttga |
116 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
1401926 |
aaacctttagttttccatttagtttgtatttgtatttcaaaattccccttgcttgaatacaacacaacattaatcaagggctattgaactttcgttttga |
1402025 |
T |
|
| Q |
117 |
aaactaacacatctatccatatgtaatcctctttttcccatgcatattaacacaatcatgcaccttattccctctgtatatatatacatgcctgactgtt |
216 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1402026 |
aaaccaacacatctatccatatgtaatcctctttttcccatgcatattaacacaatcatgcaccttattccctctgtatatatacacatgcctgactgtt |
1402125 |
T |
|
| Q |
217 |
tgcattttactcatctgtttctaaactttcttcaatcttagcagttaaacttggtgtgcatggagctgtgatttgctggagtt |
299 |
Q |
| |
|
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1402126 |
tccgttttactcatctgtttctaaactttcttcaatcttagcagttaaacttggtgtgcatggagctgtgatttgctggagtt |
1402208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 410 - 507
Target Start/End: Original strand, 1402299 - 1402396
Alignment:
| Q |
410 |
gttgaagtttgccaaatctattttgttcaagactatttctgtttaattaagtatccagtttcatttctattccatttatatttttccctaagtaattc |
507 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
1402299 |
gttgaaatttgccaaatctattttgttcaagactatatctgtttaattaagtatccagtttcatttcaattccatttatattttgccctaagtaattc |
1402396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University