View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21630_low_4 (Length: 394)
Name: NF21630_low_4
Description: NF21630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21630_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 32340220 - 32340607
Alignment:
| Q |
1 |
ctctttatatttttccctctcaaggtgtcaagagggtgtatgtatgggtgtggacaacattttccggtaggtaaaactctaataaccnnnnnnnccatat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
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| T |
32340220 |
ctctttatatttttccctctcaaggtgtcaagagggtgtatgtatgggtgtggacaacattttccgataggtaaaactctaataacctttttttttatat |
32340319 |
T |
|
| Q |
101 |
gaaacatatttgagatcaatatattagttaatcgttataaatgtgagttttcgaatgaaaattcatattttgtataactcatatattgacaatggaaatt |
200 |
Q |
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|||| |||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
32340320 |
gaaaaatatttgagatcaatatattagttaatcattataaatgtgagttttcaaatgaaaatccatattttgtataactcatatattgacaatggaaatt |
32340419 |
T |
|
| Q |
201 |
caataaataataaagatctatctatctacctacattggaatatttatccactgaaatagtacaagaagctctatgtggttcatccattggaacatcatgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32340420 |
caataaataataaagatctatctatctacctacattggaatatttatccactgaaatagtacaagaagctctatgtggttcatccattggaacatcatgt |
32340519 |
T |
|
| Q |
301 |
acaagttgatccttttgatttggcaatgtgttaacattttgtttagccaatctccctgccattctctgttgttgcaccaccaacacag |
388 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32340520 |
acaagttgatccttttgatttggcaatgtgttaacattttgtttagccaatctccctgccattctctgttgttgcaccaccaacacag |
32340607 |
T |
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