View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21630_low_8 (Length: 211)

Name: NF21630_low_8
Description: NF21630
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21630_low_8
NF21630_low_8
[»] chr4 (8 HSPs)
chr4 (18-111)||(3953533-3953626)
chr4 (126-198)||(3957476-3957548)
chr4 (128-195)||(3922019-3922086)
chr4 (128-198)||(4023148-4023218)
chr4 (128-197)||(3935367-3935436)
chr4 (128-198)||(3985072-3985142)
chr4 (153-198)||(4000229-4000274)
chr4 (127-198)||(3998985-3999056)
[»] chr5 (1 HSPs)
chr5 (22-111)||(13398607-13398696)


Alignment Details
Target: chr4 (Bit Score: 94; Significance: 5e-46; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 18 - 111
Target Start/End: Original strand, 3953533 - 3953626
Alignment:
Q  18 gggattaatatgaatctaagtattttgaggagttaatctttgattcccgatcggagatgctttgcatccaccaaaacaaaaatggcttgattgt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3953533 gggattaatatgaatctaagtattttgaggagttaatctttgattcccgatcggagatgctttgcatccaccaaaacaaaaatggcttgattgt 3953626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 126 - 198
Target Start/End: Original strand, 3957476 - 3957548
Alignment:
Q  126 caatgttggttacaaagataaatttgattcttatcaagcagtgtatttgtatcctggaagtagtgttccagag 198  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3957476 caatgctgattacaaagataaatttgattcttatcaagcagtgtatttgtatcctggaagtagtgttccagag 3957548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 128 - 195
Target Start/End: Original strand, 3922019 - 3922086
Alignment:
Q  128 atgttggttacaaagataaatttgattcttatcaagcagtgtatttgtatcctggaagtagtgttcca 195  Q
    |||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  3922019 atgttgattacaaagataactttgattcttatcaagcagtgtatgtgtatcctggaagtagtgttcca 3922086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 128 - 198
Target Start/End: Complemental strand, 4023218 - 4023148
Alignment:
Q  128 atgttggttacaaagataaatttgattcttatcaagcagtgtatttgtatcctggaagtagtgttccagag 198  Q
    |||||| |||||||||||| |||||||||||||||||||||||| | ||||||||||||||| ||||||||    
T  4023218 atgttgattacaaagataactttgattcttatcaagcagtgtatgtttatcctggaagtagtattccagag 4023148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 128 - 197
Target Start/End: Original strand, 3935367 - 3935436
Alignment:
Q  128 atgttggttacaaagataaatttgattcttatcaagcagtgtatttgtatcctggaagtagtgttccaga 197  Q
    |||||| |||||||||||| |||||||||||||||||| ||||| ||||| |||||||||||||||||||    
T  3935367 atgttgattacaaagataactttgattcttatcaagcattgtatgtgtattctggaagtagtgttccaga 3935436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 128 - 198
Target Start/End: Complemental strand, 3985142 - 3985072
Alignment:
Q  128 atgttggttacaaagataaatttgattcttatcaagcagtgtatttgtatcctggaagtagtgttccagag 198  Q
    |||||| |||||||||||   ||||||||||||||||||||||| | ||||||||||||||||||||||||    
T  3985142 atgttgattacaaagatatccttgattcttatcaagcagtgtatgtatatcctggaagtagtgttccagag 3985072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 198
Target Start/End: Complemental strand, 4000274 - 4000229
Alignment:
Q  153 ttcttatcaagcagtgtatttgtatcctggaagtagtgttccagag 198  Q
    ||||||||||||| ||||| | ||||||||||||||||||||||||    
T  4000274 ttcttatcaagcattgtatgtatatcctggaagtagtgttccagag 4000229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 198
Target Start/End: Complemental strand, 3999056 - 3998985
Alignment:
Q  127 aatgttggttacaaagataaatttgattcttatcaagcagtgtatttgtatcctggaagtagtgttccagag 198  Q
    ||||||| ||||||| |||| |||| ||||||||||||| ||||| | ||||| ||||| |||||| |||||    
T  3999056 aatgttgattacaaacataagtttggttcttatcaagcattgtatgtttatccaggaagcagtgtttcagag 3998985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 22 - 111
Target Start/End: Complemental strand, 13398696 - 13398607
Alignment:
Q  22 ttaatatgaatctaagtattttgaggagttaatctttgattcccgatcggagatgctttgcatccaccaaaacaaaaatggcttgattgt 111  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||| ||||| |||||  | |||| |||||||||||||||||||||    
T  13398696 ttaatatgaatctaagtattttgaggggttaatctctgattcccgatcagagatactttgtgttcaccgaaacaaaaatggcttgattgt 13398607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University