View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21631_high_6 (Length: 310)
Name: NF21631_high_6
Description: NF21631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21631_high_6 |
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| [»] scaffold0018 (2 HSPs) |
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| [»] scaffold0099 (1 HSPs) |
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Alignment Details
Target: scaffold0018 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: scaffold0018
Description:
Target: scaffold0018; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 8 - 293
Target Start/End: Complemental strand, 150420 - 150139
Alignment:
| Q |
8 |
ccaagaatataacacaaaagttggttcggtttttgaaaaatataattaaccaatatgtcaaaaatcagtgataatgagaggagagaagcttacaaagcca |
107 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| || ||||||||| |
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| T |
150420 |
ccaaaaatataacacaaaagttggttcggtttttgaaaaatataa----ccaatatgtcaaaaatcagtgataatgaaaggagagaaactcacaaagcca |
150325 |
T |
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| Q |
108 |
aagccaccaagcttgaaagtgtttcctgctttgatgagacccttacatgagtactttgctagaaatactttagcgtgaggtgcgacaaaaaaggcggctt |
207 |
Q |
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| T |
150324 |
aagccaccaagcttgaaagtgtttcctgctttgatgagacccttacatgagtactttgctagaaatactttagcgtgaggtgcgacaaaaaaggcggctt |
150225 |
T |
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| Q |
208 |
ctattttcttgttctcaaaggcagcagggtagtcattaatggaattgaattttctaatgttctcaggcttgaatttcagtacttca |
293 |
Q |
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| T |
150224 |
ctattttcttgttctcaaaggcagcagggtagtcattaatggaattgaattttctaatgttctcaggcttgaatttcagtacttca |
150139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0018; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 62 - 280
Target Start/End: Complemental strand, 142229 - 142010
Alignment:
| Q |
62 |
atgtcaaaaat-cagtgataatgagaggagagaagcttacaaagccaaagccaccaagcttgaaagtgtttcctgctttgatgagacccttacatgagta |
160 |
Q |
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||||||||||| |||||| ||||||||||||||| | ||||| ||||||||||||||| |||||||||| |||||||||||||| |||||||||| ||| |
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| T |
142229 |
atgtcaaaaattcagtgacaatgagaggagagaaacccacaaaaccaaagccaccaagcctgaaagtgttccctgctttgatgaggcccttacatgcgta |
142130 |
T |
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| Q |
161 |
ctttgctagaaatactttagcgtgaggtgcgacaaaaaaggcggcttctattttcttgttctcaaaggcagcagggtagtcattaatggaattgaatttt |
260 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
142129 |
ctttgctagaaatactttagcgtgaggtgcgacaaaaaaggcggcttctatttccttgttctcaaaggcagcagggtagtcattaatggaactgaaattt |
142030 |
T |
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| Q |
261 |
ctaatgttctcaggcttgaa |
280 |
Q |
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|| ||||||||| ||||||| |
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| T |
142029 |
ctgatgttctcatgcttgaa |
142010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 4e-47; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 70 - 277
Target Start/End: Complemental strand, 24988286 - 24988079
Alignment:
| Q |
70 |
aatcagtgataatgagaggagagaagcttacaaagccaaagccaccaagcttgaaagtgtttcctgctttgatgagacccttacatgagtactttgctag |
169 |
Q |
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| T |
24988286 |
aatcagtgacaatgagaggagagaaacccacaaaaccaaagccgccaagcctgaaaatgttccccactttgatgaagcccttacacgagtactttgctag |
24988187 |
T |
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| Q |
170 |
aaatactttagcgtgaggtgcgacaaaaaaggcggcttctattttcttgttctcaaaggcagcagggtagtcattaatggaattgaattttctaatgttc |
269 |
Q |
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|||||||||||| ||||| || ||||| || |||||||| |||| ||| |||||||||||||||||||||||| | |||||||| | ||| ||||| ||| |
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| T |
24988186 |
aaatactttagcatgaggcgcaacaaagaatgcggcttcaatttccttcttctcaaaggcagcagggtagtcactcatggaatttattttcctaatattc |
24988087 |
T |
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| Q |
270 |
tcaggctt |
277 |
Q |
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|||||||| |
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| T |
24988086 |
tcaggctt |
24988079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 70 - 277
Target Start/End: Complemental strand, 24899357 - 24899150
Alignment:
| Q |
70 |
aatcagtgataatgagaggagagaagcttacaaagccaaagccaccaagcttgaaagtgtttcctgctttgatgagacccttacatgagtactttgctag |
169 |
Q |
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||||||||| ||||||||||||||| | ||||| |||||||| |||||| ||||| ||| || ||||||||| |||||||| |||||||||||||| |
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| T |
24899357 |
aatcagtgacaatgagaggagagaaacccacaaaaccaaagccgccaagcctgaaaacgttccccactttgatgaagcccttacacgagtactttgctag |
24899258 |
T |
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| Q |
170 |
aaatactttagcgtgaggtgcgacaaaaaaggcggcttctattttcttgttctcaaaggcagcagggtagtcattaatggaattgaattttctaatgttc |
269 |
Q |
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|||||||||||| ||||| || ||||| || |||||||| |||| ||| |||||||||||||||||||||||| | |||||||| | ||| ||||| ||| |
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| T |
24899257 |
aaatactttagcatgaggcgcaacaaagaatgcggcttcaatttccttcttctcaaaggcagcagggtagtcactcatggaatttattttcctaatattc |
24899158 |
T |
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| Q |
270 |
tcaggctt |
277 |
Q |
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|||||||| |
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| T |
24899157 |
tcaggctt |
24899150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 67 - 277
Target Start/End: Complemental strand, 24911521 - 24911311
Alignment:
| Q |
67 |
aaaaatcagtgataatgagaggagagaagcttacaaagccaaagccaccaagcttgaaagtgtttcctgctttgatgagacccttacatgagtactttgc |
166 |
Q |
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|||||||||||| ||||||||||||||| | ||||| |||||||| |||||| ||||| ||| || ||||||||| |||||||||||||||||||| |
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| T |
24911521 |
aaaaatcagtgacaatgagaggagagaaacccacaaaaccaaagccgccaagcctgaaaacgttccccactttgatgaagcccttacatgagtactttgc |
24911422 |
T |
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| Q |
167 |
tagaaatactttagcgtgaggtgcgacaaaaaaggcggcttctattttcttgttctcaaaggcagcagggtagtcattaatggaattgaattttctaatg |
266 |
Q |
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|||||| |||||||| ||||| || ||||| ||||| ||||| |||| ||| |||||||||||||||| ||||||| | |||||||| | ||| ||||| |
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| T |
24911421 |
tagaaagactttagcatgaggcgcaacaaagaaggcagcttcaatttccttcttctcaaaggcagcagcgtagtcactcatggaatttattttcctaata |
24911322 |
T |
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| Q |
267 |
ttctcaggctt |
277 |
Q |
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||||||||||| |
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| T |
24911321 |
ttctcaggctt |
24911311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0099 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0099
Description:
Target: scaffold0099; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 197
Target Start/End: Complemental strand, 24436 - 24375
Alignment:
| Q |
136 |
ctttgatgagacccttacatgagtactttgctagaaatactttagcgtgaggtgcgacaaaa |
197 |
Q |
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||||||||| |||||||| |||||||||||||||||||||||||| ||||| || |||||| |
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| T |
24436 |
ctttgatgaagcccttacacgagtactttgctagaaatactttagcatgaggcgcaacaaaa |
24375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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