View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21631_low_2 (Length: 419)

Name: NF21631_low_2
Description: NF21631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21631_low_2
NF21631_low_2
[»] chr8 (3 HSPs)
chr8 (135-264)||(4637749-4637878)
chr8 (174-266)||(27261215-27261307)
chr8 (174-266)||(32447401-32447493)
[»] scaffold0103 (1 HSPs)
scaffold0103 (174-266)||(6038-6130)
[»] chr7 (2 HSPs)
chr7 (174-266)||(12808613-12808705)
chr7 (174-264)||(37433304-37433394)
[»] chr6 (2 HSPs)
chr6 (174-266)||(2633879-2633971)
chr6 (174-258)||(12083707-12083791)
[»] chr5 (2 HSPs)
chr5 (174-266)||(4806987-4807079)
chr5 (174-257)||(21838142-21838225)
[»] chr4 (1 HSPs)
chr4 (1-43)||(51096941-51096983)


Alignment Details
Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 135 - 264
Target Start/End: Complemental strand, 4637878 - 4637749
Alignment:
Q  135 atgcatgttggctatggaagtttgttatgatttaaaatagcaaataaaaagattttaagccatttgtatcagtgtttgtgatcaattgatcttaaagatg 234  Q
    ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||  ||||| || || |||| || || ||||||||||||||||    
T  4637878 atgcatgttggctatggaactttgttatgattttaaatagcaaataaaaagattttgaggtatttgaattagagtttctggtctattgatcttaaagatg 4637779  T
Q  235 gccatggatatcatttgcttgatcactaag 264  Q
    ||||| ||||||||||| ||||||||||||    
T  4637778 gccattgatatcatttgtttgatcactaag 4637749  T

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Target: chr8; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 174 - 266
Target Start/End: Complemental strand, 27261307 - 27261215
Alignment:
Q  174 gcaaataaaaagattttaagccatttgtatcagtgtttgtgatcaattgatcttaaagatggccatggatatcatttgcttgatcactaagta 266  Q
    |||||||||  |||| ||||||||||| || |||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||    
T  27261307 gcaaataaacggattataagccatttgaattagtgtttgtgatcaattgatgttaaagatgaccatggatatcatttgcttgatcattaagta 27261215  T

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Target: chr8; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 174 - 266
Target Start/End: Complemental strand, 32447493 - 32447401
Alignment:
Q  174 gcaaataaaaagattttaagccatttgtatcagtgtttgtgatcaattgatcttaaagatggccatggatatcatttgcttgatcactaagta 266  Q
    |||||||||  |||| ||||||||||| || |||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||    
T  32447493 gcaaataaacggattataagccatttgaattagtgtttgtgatcaattgatgttaaagatgaccatggatatcatttgcttgatcattaagta 32447401  T

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Target: scaffold0103 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 174 - 266
Target Start/End: Original strand, 6038 - 6130
Alignment:
Q  174 gcaaataaaaagattttaagccatttgtatcagtgtttgtgatcaattgatcttaaagatggccatggatatcatttgcttgatcactaagta 266  Q
    ||||||||| ||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  6038 gcaaataaacagattataagccatttgaatcagtgtttgtgatcaattgatgttaaagatggccatggatatcatttgcttgatcaccaagta 6130  T

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Target: chr7 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 174 - 266
Target Start/End: Original strand, 12808613 - 12808705
Alignment:
Q  174 gcaaataaaaagattttaagccatttgtatcagtgtttgtgatcaattgatcttaaagatggccatggatatcatttgcttgatcactaagta 266  Q
    ||||||||| ||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  12808613 gcaaataaacagattataagccatttgaatcagtgtttgtgatcaattgatgttaaagatggccatggatatcatttgcttgatcaccaagta 12808705  T

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Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 174 - 264
Target Start/End: Complemental strand, 37433394 - 37433304
Alignment:
Q  174 gcaaataaaaagattttaagccatttgtatcagtgtttgtgatcaattgatcttaaagatggccatggatatcatttgcttgatcactaag 264  Q
    |||||||||  |||| ||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||    
T  37433394 gcaaataaacggattataagccatttgaatcagtgtttgtgatcaattgatgttaaagatgaccatggatatcatttgcttgatcattaag 37433304  T

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Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 174 - 266
Target Start/End: Complemental strand, 2633971 - 2633879
Alignment:
Q  174 gcaaataaaaagattttaagccatttgtatcagtgtttgtgatcaattgatcttaaagatggccatggatatcatttgcttgatcactaagta 266  Q
    ||||||||| ||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  2633971 gcaaataaacagattataagccatttgaatcagtgtttgtgatcaattgatgttaaagatggccatggatatcatttgcttgatcaccaagta 2633879  T

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Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 174 - 258
Target Start/End: Complemental strand, 12083791 - 12083707
Alignment:
Q  174 gcaaataaaaagattttaagccatttgtatcagtgtttgtgatcaattgatcttaaagatggccatggatatcatttgcttgatc 258  Q
    ||||||||| | ||| ||||||||||| ||||||||||||||||||||||| ||||||||| |||| ||||||||||||||||||    
T  12083791 gcaaataaacaaattataagccatttgaatcagtgtttgtgatcaattgatgttaaagatgaccatagatatcatttgcttgatc 12083707  T

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Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 174 - 266
Target Start/End: Complemental strand, 4807079 - 4806987
Alignment:
Q  174 gcaaataaaaagattttaagccatttgtatcagtgtttgtgatcaattgatcttaaagatggccatggatatcatttgcttgatcactaagta 266  Q
    |||||||||  |||| ||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| | ||||||    
T  4807079 gcaaataaacggattataagccatttgaatcagtgtttgtgatcaattgatgttaaagatgaccatggatatcatttgcttgatgattaagta 4806987  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 174 - 257
Target Start/End: Original strand, 21838142 - 21838225
Alignment:
Q  174 gcaaataaaaagattttaagccatttgtatcagtgtttgtgatcaattgatcttaaagatggccatggatatcatttgcttgat 257  Q
    |||||||||  |||| |||| |||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||    
T  21838142 gcaaataaacggattataagtcatttgaatcagtgtttgtgatcaattgatgttaaagatgaccatggatatcatttgcttgat 21838225  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 51096983 - 51096941
Alignment:
Q  1 aaggtttacaacaaatcttttagccaaagatctgatggagaaa 43  Q
    |||||||||| ||||||||| |||||||| |||||||||||||    
T  51096983 aaggtttacagcaaatctttcagccaaagttctgatggagaaa 51096941  T

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