View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21631_low_4 (Length: 333)
Name: NF21631_low_4
Description: NF21631
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21631_low_4 |
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| [»] scaffold0775 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 314
Target Start/End: Complemental strand, 2535626 - 2535313
Alignment:
| Q |
1 |
ttgcggttgattccaaaaatggttccaaatctgaatctacaccaaaaccgacgtttgtgttgcgattcagaatgaattgaacattcagaatgtttcaatt |
100 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
2535626 |
ttgcggttgattccaaaaatggttccaaattcgaatctacaccaaaaccggcgtttgtgttgcgattcagaatgaattgaacattcataatgtttcaatt |
2535527 |
T |
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| Q |
101 |
tgtgttcataatgaattgttcagaatgatttcatgttgtttgtttgtttctttgtgttcattggatgatgaagcaactcttggaatcaaatgttggtgga |
200 |
Q |
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| T |
2535526 |
cgtgttcataatgaattgttcagaatgatttcatgttgtttgtttgtttctctgtgttcattggatgatgaagcaactcttggaatcaaatgttggtgga |
2535427 |
T |
|
| Q |
201 |
ttttgaattctgggttgcatgagatgagtctcttgatttttggctttctgcttgctgctcgctcgtctttctaaacgtgatgctaattttcgtcgtcgtc |
300 |
Q |
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||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
2535426 |
tttggaattctgggttgtatgagatgagtctcttgatttttggctttctgcttgctactcgctcgtctttctaaacgtgatgctaattttcgtcgttgtc |
2535327 |
T |
|
| Q |
301 |
ttgttgattcaggt |
314 |
Q |
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|||||||||||||| |
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| T |
2535326 |
ttgttgattcaggt |
2535313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 314
Target Start/End: Original strand, 11446621 - 11446935
Alignment:
| Q |
1 |
ttgcggttgattccaaaaatggttccaaatctgaatctacaccaaaaccgacgtttgtgttgcgattcagaatgaattgaacattcagaatgtttcaatt |
100 |
Q |
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||||||||||||||||||||||||||| ||| ||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
11446621 |
ttgcggttgattccaaaaatggttccagatccgaatctacaccaaaaacggcgtttttgttgcgattcagaatgaattgaacattcagaatgtt-caatt |
11446719 |
T |
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| Q |
101 |
tgtgttcataatgaattgttcagaatgatttcatgttgtttgtttgtttctttgtgttcattggatgatgaagcaactcttggaatcaaatgttggtgga |
200 |
Q |
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| T |
11446720 |
cgtgttcataatgaattgttcaaaatgatttcttgttgattgtttgtttctttgtgttcattggatgatgaagcaagtcttggaatcaaatgttggtgga |
11446819 |
T |
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| Q |
201 |
ttttgaattctgggttgcatgag--atgagtctcttgatttttggctttctgcttgctgctcgctcgtctttctaaacgtgatgctaattttcgtcgtcg |
298 |
Q |
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||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || |
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| T |
11446820 |
tttggaattctgggttgtatgagatatgagtctcttgatttttggctttctgcttgctgctcgctcgtctttctaaacatgatgctaattttcgtcgccg |
11446919 |
T |
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| Q |
299 |
tcttgttgattcaggt |
314 |
Q |
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|||||||||||||||| |
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| T |
11446920 |
tcttgttgattcaggt |
11446935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 258 - 310
Target Start/End: Original strand, 36448639 - 36448691
Alignment:
| Q |
258 |
ctcgctcgtctttctaaacgtgatgctaattttcgtcgtcgtcttgttgattc |
310 |
Q |
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| T |
36448639 |
ctcgctcgtctttctaaacgtgatgccagtttccgtcgtcgtcttgttgattc |
36448691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0775 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0775
Description:
Target: scaffold0775; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 6098 - 6155
Alignment:
| Q |
160 |
attggatgatgaagcaactcttggaatcaaatgttggtggattttgaattctgggttg |
217 |
Q |
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| T |
6098 |
attggatgaagaagctagtcttggaaacaaatgttggtggatttggaattctgggttg |
6155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 32240328 - 32240271
Alignment:
| Q |
160 |
attggatgatgaagcaactcttggaatcaaatgttggtggattttgaattctgggttg |
217 |
Q |
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||||||||||||||| | |||||||| ||||||||||||| ||| |||||||| |||| |
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| T |
32240328 |
attggatgatgaagctagtcttggaaacaaatgttggtgggtttggaattctgagttg |
32240271 |
T |
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