View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21632_high_1 (Length: 668)

Name: NF21632_high_1
Description: NF21632
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21632_high_1
NF21632_high_1
[»] chr8 (1 HSPs)
chr8 (9-650)||(41751238-41751880)


Alignment Details
Target: chr8 (Bit Score: 556; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 556; E-Value: 0
Query Start/End: Original strand, 9 - 650
Target Start/End: Complemental strand, 41751880 - 41751238
Alignment:
Q  9 gaagaatataacataattgatattagaaattaacaaggtagatnnnnnnnttgcagttttcaactacaacccagggatgagcaccgttgttcaggtatac 108  Q
    |||| |||||||  |||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41751880 gaagtatataaccgaattgatattagaaattaacaaggtagataaaaaaattgcagttttcaactacaacccagggatgagcaccgttgttcaggtatac 41751781  T
Q  109 aaagatgactatgatcattgcactatcaaagataccatctacacatacttcagagggaactctagtgttactttggacaagcctggggactattatttct 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41751780 aaagatgactatgatcattgcactatcaaagataccatctacacatacttcagagggaactctagtgttactttggacaagcctggggactattatttct 41751681  T
Q  209 tctgctctgttggaaagcgttgtgagacaggccaaaaactttgggttaaagttcaatgatttgatcatttcatcttattaatttatctaagcttgaaccg 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41751680 tctgctctgttggaaagcgttgtgagacaggccaaaaactttgggttaaagttcaatgatttgatcatttcatcttattaatttatctaagcttgaaccg 41751581  T
Q  309 ttttcatattatttggcccatcaattgtatataaggtatat--tgtgcccttaaaagaaaggtacattgtgggcacacaattttccatttgtttatgtct 406  Q
    |||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41751580 ttttgatattatttggcccatcaattgtatataaggtatattgtgtgcccttaaaagaaaggtacattgtgggcacacaattttccatttgtttatgtct 41751481  T
Q  407 tgtaccataagcaatatagttgcgtggcattttgaatttgcccctattgtgtattatgaaatatgaatcctcaaatctctatttatgtatttttaattgt 506  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  41751480 tgtaccataagcaatatagttgcgtggcattttgaatttgcccctattgtgtattatgaaatatgaatcctc-aatctctatttatgtatttttaattgt 41751382  T
Q  507 ctttttcataattttaaagagcatacggtgacatgcactcacatgttaaatgagaaattacaaatacaaatttacgcatcttcatatcaaatgtcttact 606  Q
    |||||||||||||||||||||||  ||||||||  |||||| ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  41751381 ctttttcataattttaaagagcacgcggtgacacacactcatatgttaagtgagaaattacaaatacaaatttgcgcatcttcatatcaaatgtcttact 41751282  T
Q  607 tcttgtgttaacggagcattgcttcaattcggcaaaccatctcg 650  Q
     |||||||||||||||||||||||||||||||||||||||||||    
T  41751281 ccttgtgttaacggagcattgcttcaattcggcaaaccatctcg 41751238  T

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