View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21633_high_11 (Length: 250)
Name: NF21633_high_11
Description: NF21633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21633_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 99 - 233
Target Start/End: Original strand, 43163444 - 43163578
Alignment:
| Q |
99 |
atccacatgattagatttggtaatcttgggttctttctttataacaaaacagaaaggttccatattttgtcttcactgctgcattttgatgaggtacatt |
198 |
Q |
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| T |
43163444 |
atccacatgattagatttggtaatcttgggttctttctttataacaaaacagaaaggttccatattttgttttaactggtgcattttgatgaggtatatt |
43163543 |
T |
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| Q |
199 |
tgaaacattctatgctgacttgtattcgtgtgggt |
233 |
Q |
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| T |
43163544 |
tgaaacattgtatgctgacttgtattcgtgtgggt |
43163578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 61
Target Start/End: Original strand, 43163400 - 43163445
Alignment:
| Q |
16 |
attgatgattgctattaaatttacaggtctgtgaaaaccaaggtat |
61 |
Q |
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| T |
43163400 |
attgatgattgcgattatatttacaggtctgggaaaaccaaggtat |
43163445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 16 - 103
Target Start/End: Original strand, 51464283 - 51464367
Alignment:
| Q |
16 |
attgatgattgctattaaatttacaggtctgtgaaaaccaaggtatgcgcgt-aatataccagagggagagagaaagagattgaatcca |
103 |
Q |
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| T |
51464283 |
attgatgattgccattaaatttacaggtctgggaaaaccaaggtttgtgcgtaaatataccagagg----gagaaagagattgaatcca |
51464367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 106 - 165
Target Start/End: Original strand, 51464397 - 51464452
Alignment:
| Q |
106 |
tgattagatttggtaatcttgggttctttctttataacaaaacagaaaggttccatattt |
165 |
Q |
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| T |
51464397 |
tgattaggtttggtaatcttgggttct----ttataacaaaacagaaaggttccatattt |
51464452 |
T |
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