View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21633_high_6 (Length: 339)
Name: NF21633_high_6
Description: NF21633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21633_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 322
Target Start/End: Complemental strand, 36872539 - 36872235
Alignment:
| Q |
18 |
agagcactataggaaatgcatggagcataggtttaaggaagtcatatcaagcaaaggcttagatgtagtccaaactgaggtgaaagatatggattgggaa |
117 |
Q |
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| T |
36872539 |
agagcactataggaaatgcatggagcataggtttaaggaagtcatatcaagcaaaggcttagatgttgtccaaactgaggtcaaagatatggattgggaa |
36872440 |
T |
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| Q |
118 |
agcaccttccatgttcgtcacctccctgaatcaaacatttcagagatacctgatctcagtgatgaatacaggttacacaaaacaaacattaatatgacat |
217 |
Q |
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| T |
36872439 |
agcaccttccatgttcgtcacctccctgaatcaaacatttcagagatacctgatctcagtgatgaatacaggttacacaaaacaaatattaataggacat |
36872340 |
T |
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| Q |
218 |
atataacacattgcataacataatattattttgtcacgtttctatgattttgtagaagcatatatatcttcttttatcatgattctaaatctcttatgga |
317 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36872339 |
atataacacattgcataacataatatttttttgtcacgtttctatgattttgtagaagcatatatatcttcttttatcatgattctaaatctcttatgga |
36872240 |
T |
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| Q |
318 |
aactg |
322 |
Q |
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||||| |
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| T |
36872239 |
aactg |
36872235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 88 - 191
Target Start/End: Original strand, 37628963 - 37629066
Alignment:
| Q |
88 |
caaactgaggtgaaagatatggattgggaaagcaccttccatgttcgtcacctccctgaatcaaacatttcagagatacctgatctcagtgatgaataca |
187 |
Q |
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||||||||||| ||||| ||||| ||||| || || |||||| | |||||||| ||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
37628963 |
caaactgaggtcaaagacatggactgggagagtactttccatttgcgtcacctacctgagtcaaacatttcagagatccctgatctcagtgatgaataca |
37629062 |
T |
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| Q |
188 |
ggtt |
191 |
Q |
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|||| |
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| T |
37629063 |
ggtt |
37629066 |
T |
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