View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21633_high_7 (Length: 324)
Name: NF21633_high_7
Description: NF21633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21633_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 270; Significance: 1e-151; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 13 - 306
Target Start/End: Complemental strand, 30511976 - 30511683
Alignment:
| Q |
13 |
aatatcccaatttttctgaagcttgctgttccttcagctgtaatggtttggtaatcaccttctctagcaattaaggactacataacacaacttagttaat |
112 |
Q |
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| T |
30511976 |
aatatcccaattttcctgaagcttgctgttccttcagctgtaatggtttggtaatcaccttctctggcaattaaggactacataacacaacatagttaat |
30511877 |
T |
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| Q |
113 |
tttctttttagaggttctaacgttgtttccatttttatttccgacaacttggtgagcagcttggaaatgtggtcatttgaattaatggttcttctttccg |
212 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30511876 |
tttctttttagaggttctaatgttgtttccatttttatttccgacaacttggtgagcagcttggaaatgtggtcatttgaattaatggttcttctttccg |
30511777 |
T |
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| Q |
213 |
gtcttcttccaaatccgaagttggaaacatcagtgctttctatcaggttgatttcatattgaagattctcttcaatattattgactttattatt |
306 |
Q |
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| T |
30511776 |
gtcttcttccaaatccgaagttggaaacatcagtactttctatcaggttggtttcatattgaagattctcttcaatattattgactttattatt |
30511683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 113 - 294
Target Start/End: Original strand, 24707963 - 24708145
Alignment:
| Q |
113 |
tttctttttagaggttctaacgttgtttccattttt-atttccgacaacttggtgagcagcttggaaatgtggtcatttgaattaatggttcttctttcc |
211 |
Q |
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| T |
24707963 |
tttctttttagagattctaatgttgttttcattttttattttcgggaacatggcaagcagcttggaattgtggtcatttgaattgatggttcttctttcc |
24708062 |
T |
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| Q |
212 |
ggtcttcttccaaatccgaagttggaaacatcagtgctttctatcaggttgatttcatattgaagattctcttcaatattatt |
294 |
Q |
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| T |
24708063 |
ggtcttcttccaaatccaaagttggaaacatcagtgctttctatttggtttgtttcatattcaagatccttttcgatattatt |
24708145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 167 - 272
Target Start/End: Complemental strand, 30484315 - 30484210
Alignment:
| Q |
167 |
agcagcttggaaatgtggtcatttgaattaatggttcttctttccggtcttcttccaaatccgaagttggaaacatcagtgctttctatcaggttgattt |
266 |
Q |
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|||||| |||||||||||||||||||||| |||||||| ||||| ||| ||||||||||||| |||||||||||||| |||||||||||| ||||| || |
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| T |
30484315 |
agcagcatggaaatgtggtcatttgaattgatggttctcctttctggtgttcttccaaatccaaagttggaaacatctgtgctttctatctggttggttg |
30484216 |
T |
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| Q |
267 |
catatt |
272 |
Q |
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|||||| |
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| T |
30484215 |
catatt |
30484210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 170 - 271
Target Start/End: Complemental strand, 30502147 - 30502046
Alignment:
| Q |
170 |
agcttggaaatgtggtcatttgaattaatggttcttctttccggtcttcttccaaatccgaagttggaaacatcagtgctttctatcaggttgatttcat |
269 |
Q |
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||||||||||| ||||||||||||||| ||||||| ||||||||||| ||||||||||| |||||||||||||| |||||||||||| |||| |||||| |
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| T |
30502147 |
agcttggaaatatggtcatttgaattagtggttctcctttccggtctccttccaaatccaaagttggaaacatcggtgctttctatctggttagtttcat |
30502048 |
T |
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| Q |
270 |
at |
271 |
Q |
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|| |
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| T |
30502047 |
at |
30502046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 30484518 - 30484453
Alignment:
| Q |
13 |
aatatcccaatttttctgaagcttgctgttccttcagctgtaatggtttggtaatcaccttctcta |
78 |
Q |
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| T |
30484518 |
aatatcccaattttcctgaagcttgccattccttcagctgtaatggtttggtaatcaccttctcta |
30484453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 24707808 - 24707871
Alignment:
| Q |
13 |
aatatcccaatttttctgaagcttgctgttccttcagctgtaatggtttggtaatcaccttctc |
76 |
Q |
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| T |
24707808 |
aatatcccaatttttatgaagcttgccattccttcggctataatggtttggtaatcatcttctc |
24707871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 30502335 - 30502265
Alignment:
| Q |
8 |
cgaagaatatcccaatttttctgaagcttgctgttccttcagctgtaatggtttggtaatcaccttctcta |
78 |
Q |
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| T |
30502335 |
cgaacaatatcccgattttcttgaagcttgccattccttcagctgcaatggtttggtaatcaccttttcta |
30502265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 186 - 255
Target Start/End: Complemental strand, 30380667 - 30380598
Alignment:
| Q |
186 |
catttgaattaatggttcttctttccggtcttcttccaaatccgaagttggaaacatcagtgctttctat |
255 |
Q |
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| T |
30380667 |
catttgaactaatggtgcttctttctggtgctcttcccaatccaaaattgcaaacatcagtgctttctat |
30380598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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