View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21633_high_8 (Length: 319)

Name: NF21633_high_8
Description: NF21633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21633_high_8
NF21633_high_8
[»] chr3 (23 HSPs)
chr3 (12-306)||(41080525-41080817)
chr3 (196-305)||(14623830-14623939)
chr3 (197-305)||(13898046-13898154)
chr3 (196-300)||(49607414-49607518)
chr3 (196-299)||(27714888-27714991)
chr3 (196-300)||(17470405-17470509)
chr3 (196-300)||(26141528-26141632)
chr3 (196-300)||(53982011-53982115)
chr3 (195-306)||(8076392-8076503)
chr3 (237-306)||(1758446-1758516)
chr3 (196-258)||(11095392-11095453)
chr3 (196-305)||(35536626-35536735)
chr3 (196-300)||(33644200-33644304)
chr3 (197-300)||(31456690-31456793)
chr3 (200-306)||(30801723-30801829)
chr3 (196-279)||(54868913-54868995)
chr3 (196-305)||(8956762-8956871)
chr3 (201-306)||(26754700-26754805)
chr3 (201-279)||(52629305-52629382)
chr3 (196-258)||(24699993-24700054)
chr3 (196-300)||(11907371-11907475)
chr3 (218-267)||(36331359-36331407)
chr3 (196-256)||(33118892-33118951)
[»] chr2 (27 HSPs)
chr2 (196-306)||(17819994-17820104)
chr2 (196-306)||(33436090-33436200)
chr2 (196-300)||(9058480-9058584)
chr2 (196-307)||(7465724-7465835)
chr2 (197-306)||(41575138-41575248)
chr2 (199-306)||(28863458-28863565)
chr2 (196-267)||(40613932-40614002)
chr2 (196-301)||(26891499-26891604)
chr2 (218-306)||(3440001-3440089)
chr2 (196-300)||(17473020-17473124)
chr2 (199-279)||(19930838-19930917)
chr2 (240-306)||(3737986-3738053)
chr2 (196-279)||(40701478-40701560)
chr2 (218-267)||(2997517-2997565)
chr2 (196-300)||(5574484-5574588)
chr2 (196-300)||(10249378-10249482)
chr2 (196-300)||(13438343-13438447)
chr2 (196-279)||(20700815-20700897)
chr2 (196-279)||(30915463-30915545)
chr2 (196-279)||(32505666-32505748)
chr2 (196-267)||(42257193-42257263)
chr2 (196-267)||(43490121-43490191)
chr2 (196-267)||(45097765-45097835)
chr2 (196-258)||(27864704-27864765)
chr2 (196-258)||(28381694-28381755)
chr2 (196-258)||(33436211-33436272)
chr2 (237-279)||(38732394-38732436)
[»] chr6 (13 HSPs)
chr6 (196-305)||(31953021-31953130)
chr6 (238-306)||(12732523-12732592)
chr6 (196-300)||(32869678-32869782)
chr6 (191-267)||(30341390-30341465)
chr6 (196-267)||(15508054-15508124)
chr6 (196-267)||(15990072-15990142)
chr6 (200-305)||(28536479-28536582)
chr6 (199-300)||(22880654-22880755)
chr6 (196-300)||(17598554-17598658)
chr6 (196-268)||(31976248-31976319)
chr6 (196-258)||(29857827-29857888)
chr6 (201-305)||(9379703-9379807)
chr6 (196-300)||(11427616-11427722)
[»] chr4 (26 HSPs)
chr4 (196-268)||(50526200-50526271)
chr4 (196-306)||(50052418-50052528)
chr4 (196-300)||(6034044-6034148)
chr4 (196-306)||(29239886-29239996)
chr4 (196-301)||(3481654-3481759)
chr4 (196-267)||(55475191-55475261)
chr4 (196-300)||(11511458-11511562)
chr4 (196-300)||(48183045-48183149)
chr4 (196-279)||(480465-480547)
chr4 (196-267)||(29547989-29548059)
chr4 (219-305)||(29977908-29977994)
chr4 (196-279)||(54473551-54473633)
chr4 (241-306)||(18769037-18769103)
chr4 (196-258)||(40574779-40574840)
chr4 (195-300)||(41236346-41236451)
chr4 (218-267)||(17983773-17983821)
chr4 (196-300)||(24995103-24995207)
chr4 (196-301)||(55079708-55079814)
chr4 (196-267)||(19670746-19670816)
chr4 (196-258)||(31910192-31910253)
chr4 (187-300)||(42044363-42044476)
chr4 (218-268)||(50813921-50813970)
chr4 (218-267)||(32766980-32767028)
chr4 (196-268)||(44536775-44536845)
chr4 (234-306)||(48647716-48647789)
chr4 (195-267)||(8343193-8343264)
[»] chr8 (20 HSPs)
chr8 (196-306)||(37038479-37038589)
chr8 (196-300)||(43414577-43414681)
chr8 (195-300)||(1179936-1180041)
chr8 (197-306)||(5957831-5957940)
chr8 (196-300)||(12831047-12831151)
chr8 (196-300)||(15197333-15197437)
chr8 (196-300)||(40423939-40424043)
chr8 (196-279)||(504139-504221)
chr8 (196-267)||(16383377-16383447)
chr8 (196-267)||(34307216-34307286)
chr8 (218-306)||(8841422-8841510)
chr8 (201-258)||(10621126-10621182)
chr8 (196-300)||(14547922-14548026)
chr8 (196-300)||(34012292-34012396)
chr8 (196-256)||(20074975-20075034)
chr8 (196-267)||(4854893-4854963)
chr8 (196-279)||(23122615-23122697)
chr8 (196-258)||(15048221-15048281)
chr8 (196-305)||(17443825-17443934)
chr8 (195-279)||(14055610-14055693)
[»] chr1 (18 HSPs)
chr1 (196-306)||(51898673-51898783)
chr1 (196-268)||(37649198-37649269)
chr1 (196-300)||(47452316-47452420)
chr1 (196-279)||(2581915-2581997)
chr1 (196-279)||(9474894-9474976)
chr1 (196-279)||(38595154-38595236)
chr1 (196-258)||(27564774-27564835)
chr1 (201-306)||(44453984-44454089)
chr1 (199-300)||(44548372-44548473)
chr1 (196-300)||(8346384-8346488)
chr1 (196-300)||(32813247-32813351)
chr1 (195-279)||(3000318-3000401)
chr1 (196-279)||(5959018-5959100)
chr1 (238-300)||(13414802-13414865)
chr1 (196-267)||(41608523-41608593)
chr1 (196-267)||(50591030-50591100)
chr1 (196-267)||(23597121-23597191)
chr1 (196-279)||(48716300-48716382)
[»] chr5 (18 HSPs)
chr5 (196-300)||(2740274-2740378)
chr5 (196-300)||(6679698-6679802)
chr5 (199-306)||(18520874-18520981)
chr5 (196-268)||(28177775-28177846)
chr5 (196-267)||(2252198-2252268)
chr5 (196-279)||(42414320-42414402)
chr5 (191-267)||(3921295-3921370)
chr5 (196-306)||(35943882-35943992)
chr5 (197-256)||(36875644-36875702)
chr5 (196-258)||(35785199-35785260)
chr5 (196-258)||(36732981-36733042)
chr5 (201-258)||(10356639-10356696)
chr5 (196-300)||(33149634-33149738)
chr5 (196-300)||(40145407-40145511)
chr5 (196-258)||(14831814-14831875)
chr5 (246-303)||(25831334-25831392)
chr5 (196-305)||(33825315-33825424)
chr5 (196-299)||(13811652-13811755)
[»] chr7 (26 HSPs)
chr7 (196-300)||(3434562-3434666)
chr7 (196-300)||(36361909-36362013)
chr7 (196-306)||(18207180-18207289)
chr7 (196-279)||(35137533-35137615)
chr7 (196-279)||(40846131-40846213)
chr7 (196-258)||(19329842-19329903)
chr7 (185-267)||(46374832-46374913)
chr7 (196-300)||(7389389-7389493)
chr7 (196-300)||(36362026-36362130)
chr7 (219-306)||(2318233-2318320)
chr7 (196-267)||(32564456-32564526)
chr7 (196-258)||(19436226-19436287)
chr7 (196-266)||(22343361-22343430)
chr7 (196-300)||(8080379-8080483)
chr7 (238-306)||(36208214-36208283)
chr7 (196-300)||(38267040-38267144)
chr7 (219-279)||(8238236-8238295)
chr7 (187-258)||(10343602-10343672)
chr7 (196-279)||(35468873-35468955)
chr7 (196-306)||(41423682-41423792)
chr7 (196-267)||(41915741-41915811)
chr7 (199-300)||(3783998-3784099)
chr7 (196-258)||(4999553-4999614)
chr7 (196-265)||(38044197-38044265)
chr7 (196-300)||(38837217-38837321)
chr7 (201-300)||(35522881-35522980)
[»] scaffold1268 (1 HSPs)
scaffold1268 (196-255)||(971-1029)
[»] scaffold1267 (1 HSPs)
scaffold1267 (196-255)||(971-1029)
[»] scaffold0018 (1 HSPs)
scaffold0018 (221-268)||(152523-152569)
[»] scaffold0237 (1 HSPs)
scaffold0237 (196-258)||(4029-4090)


Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 12 - 306
Target Start/End: Original strand, 41080525 - 41080817
Alignment:
Q  12 gaaatgaaggtatagcttattcggactcatacgtctgtttaacttcacataactatttgcagtgtggaaagaaaagaagttacccttcacaaatggatgc 111  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41080525 gaaatgaatgtatagcttattcggactcatacgtctgtttaacttcacataactatttgcagtgtggaaagaaaagaagttacccttcacaaatggatgc 41080624  T
Q  112 agattctttatgtttgaagaagttgaagggaaatttcttattaggtattattatgatatgccaactttgtgtgactttaacaacgagtaatgatacatgg 211  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| | | ||||||||||||||||||||||||||| |    
T  41080625 agattctttacgtttgaagaagttgaagggaaatttcttattaggtattattatgatataccaactctctatgactttaacaacgagtaatgatacatag 41080724  T
Q  212 acatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggacccacacgagcacattttctctttcatctc 306  Q
    ||||| ||| || |||||||||||| ||||||||||| ||||||||| | ||||||| |||||||||||||| ||||||||||||||||||||||    
T  41080725 acatcctta-gtagcaaaacaccct-ttgacacccacgcaaaaatctgatatgtggtcatgtggacccacacaagcacattttctctttcatctc 41080817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 196 - 305
Target Start/End: Complemental strand, 14623939 - 14623830
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggacc-cacacgagcacatttt 294  Q
    |||||||||||||| |||||| ||||||||||| |||||| ||||||||||||| |||||||| ||||||| | ||||||||| ||||| |||||| |||    
T  14623939 gagtaatgatacatagacatccttaggtggcaatacaccc-cttgacacccacataaaaatctgacatgtgttcatgtggacctcacacaagcacacttt 14623841  T
Q  295 ctctttcatct 305  Q
    |||||||||||    
T  14623840 ctctttcatct 14623830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 197 - 305
Target Start/End: Complemental strand, 13898154 - 13898046
Alignment:
Q  197 agtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggacc-cacacgagcacattttc 295  Q
    |||||||||| ||  ||||| ||||||||||| |||||| ||||||||||||| |||||||| ||| ||| | ||||||||| ||||| |||||| ||||    
T  13898154 agtaatgatagataaacatccttaggtggcaatacaccc-cttgacacccacataaaaatctgacacgtgttcatgtggacctcacacaagcacactttc 13898056  T
Q  296 tctttcatct 305  Q
    ||||||||||    
T  13898055 tctttcatct 13898046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 196 - 300
Target Start/End: Original strand, 49607414 - 49607518
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| | ||||||||||| ||||||| ||||||||||||||||||||| ||| || || | ||||| ||||||| |||||| |||    
T  49607414 gagtaatgatacatagacacccttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggatcccacacaagcacacttt 49607512  T
Q  295 ctcttt 300  Q
    ||||||    
T  49607513 ctcttt 49607518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 196 - 299
Target Start/End: Complemental strand, 27714991 - 27714888
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| |||||||||| || ||||||| ||||||||||||||||||||| ||| || || ||||||| ||| ||| |||||| |||    
T  27714991 gagtaatgatacatagacacctttaggtggtaatacaccct-ttgacacccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacacttt 27714893  T
Q  295 ctctt 299  Q
    |||||    
T  27714892 ctctt 27714888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 196 - 300
Target Start/End: Original strand, 17470405 - 17470509
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| ||||||||||||| ||| ||| || |||||||||||||||||| ||| || || | ||||| ||||||| |||||| |||    
T  17470405 gagtaatgatacatagacacctttaggtggcaataca-ccttttaacacccacacaaaaatctgacacgtagtcacgtggaccccacacaagcacacttt 17470503  T
Q  295 ctcttt 300  Q
    ||||||    
T  17470504 ctcttt 17470509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 196 - 300
Target Start/End: Complemental strand, 26141632 - 26141528
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||| ||||||||| |||||| ||||||||||| ||||||| || |||||||||||||||||| ||| ||||| |  |||| ||||||| |||||| |||    
T  26141632 gagttatgatacatagacatccttaggtggcaatacaccct-ttaacacccacacaaaaatctgacacgtggtcacatggaccccacacaagcacacttt 26141534  T
Q  295 ctcttt 300  Q
    ||||||    
T  26141533 ctcttt 26141528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 196 - 300
Target Start/End: Original strand, 53982011 - 53982115
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| | ||||||||||| ||||||| ||||||||||||||||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  53982011 gagtaatgatacatagacacccttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 53982109  T
Q  295 ctcttt 300  Q
    ||||||    
T  53982110 ctcttt 53982115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 195 - 306
Target Start/End: Original strand, 8076392 - 8076503
Alignment:
Q  195 cgagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattt 293  Q
    |||||||||||||||  ||| | ||||||||||  ||||||| ||||||||||||||||||||||||| || || | ||||| ||| ||| |||||| ||    
T  8076392 cgagtaatgatacataaacacccttaggtggcagtacaccct-ttgacacccacacaaaaatctaacacgtagtcacgtggaccccgcacaagcacactt 8076490  T
Q  294 tctctttcatctc 306  Q
    |||||||| ||||    
T  8076491 tctctttcctctc 8076503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 237 - 306
Target Start/End: Complemental strand, 1758516 - 1758446
Alignment:
Q  237 cttgacacccacacaaaaatctaacatgtggtaatgtggac-ccacacgagcacattttctctttcatctc 306  Q
    |||||||||||||||||||||| |||| |||| | |||||| |||||| | ||||||||||||||||||||    
T  1758516 cttgacacccacacaaaaatctgacatatggttacgtggactccacacaaacacattttctctttcatctc 1758446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 196 - 258
Target Start/End: Complemental strand, 11095453 - 11095392
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatct 258  Q
    |||||||||||||| |||| | ||||||||||| ||||||| |||||||||||||||||||||    
T  11095453 gagtaatgatacatagacacccttaggtggcaatacaccct-ttgacacccacacaaaaatct 11095392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 196 - 305
Target Start/End: Original strand, 35536626 - 35536735
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggacc-cacacgagcacatttt 294  Q
    |||||||||||||| |||||| ||| ||||||| ||||| | |||||||||||| |||||| | ||| ||||| |||||||||  |||| |||||| ||     
T  35536626 gagtaatgatacatagacatccttatgtggcaatacaccat-ttgacacccacataaaaatgtgacacgtggtcatgtggaccttacacaagcacacttc 35536724  T
Q  295 ctctttcatct 305  Q
    |||||||||||    
T  35536725 ctctttcatct 35536735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 300
Target Start/End: Original strand, 33644200 - 33644304
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| | || |||||||| ||||||| ||||||||||||||||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  33644200 gagtaatgatacatagacacccttgggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 33644298  T
Q  295 ctcttt 300  Q
    ||||||    
T  33644299 ctcttt 33644304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 197 - 300
Target Start/End: Original strand, 31456690 - 31456793
Alignment:
Q  197 agtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttc 295  Q
    ||||||||||||| |||| |  |||| ||||| ||||||| ||||||||||||||||||||| ||| || || ||||||| ||| ||| |||||| ||||    
T  31456690 agtaatgatacatagacacccataggcggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacactttc 31456788  T
Q  296 tcttt 300  Q
    |||||    
T  31456789 tcttt 31456793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 306
Target Start/End: Complemental strand, 30801829 - 30801723
Alignment:
Q  200 aatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc-acacgagcacattttctct 298  Q
    |||||||||| |||| | |||||||  || ||||||| |||| |||||||||||||| | |||||| || || ||||||| |||| ||||||||||||||    
T  30801829 aatgatacatagacacccttaggtgataatacaccct-ttgatacccacacaaaaatatgacatgtagtcatatggaccccacacaagcacattttctct 30801731  T
Q  299 ttcatctc 306  Q
    ||| ||||    
T  30801730 ttcctctc 30801723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 279
Target Start/End: Complemental strand, 54868995 - 54868913
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc 279  Q
    |||||||||||||| |||| | ||||||||||| ||| ||| ||||||||||||||||||||| ||| || || | ||||||||    
T  54868995 gagtaatgatacatagacacccttaggtggcaataca-ccttttgacacccacacaaaaatctgacacgtagttacgtggaccc 54868913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 305
Target Start/End: Original strand, 8956762 - 8956871
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggacc-cacacgagcacatttt 294  Q
    |||||||||||||| |||||| ||| ||||||| ||| ||| |||||||||||| |||||| | ||| ||| | |||||||||  |||| |||||| ||     
T  8956762 gagtaatgatacatagacatccttatgtggcaatacatcct-ttgacacccacataaaaatgtgacacgtgttcatgtggaccttacacaagcacacttc 8956860  T
Q  295 ctctttcatct 305  Q
    |||||||||||    
T  8956861 ctctttcatct 8956871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 306
Target Start/End: Original strand, 26754700 - 26754805
Alignment:
Q  201 atgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctt 299  Q
    ||||| ||| |||| | ||||||||||| ||||||| | |||| |||||||||||||| ||||||||| |  |||| ||| ||| |||||||||||||||    
T  26754700 atgattcatagacacccttaggtggcaatacaccct-tggacatccacacaaaaatctgacatgtggtcacatggaccccgcacaagcacattttctctt 26754798  T
Q  300 tcatctc 306  Q
    || ||||    
T  26754799 tcctctc 26754805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 201 - 279
Target Start/End: Original strand, 52629305 - 52629382
Alignment:
Q  201 atgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc 279  Q
    ||||||||| |||| | ||||||||||| ||||||| ||||||||||||||||||||| ||| || || | ||||||||    
T  52629305 atgatacatagacacccttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccc 52629382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 258
Target Start/End: Complemental strand, 24700054 - 24699993
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatct 258  Q
    |||||||||||||| |||||| |||| |||||| ||| ||| |||||||||||| ||||||||    
T  24700054 gagtaatgatacatagacatccttagttggcaataca-ccttttgacacccacataaaaatct 24699993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 300
Target Start/End: Original strand, 11907371 - 11907475
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||| ||||||||| |||| | ||||||| ||| |||| | ||  |||| ||||||||||||| ||||||||| || |||| ||| ||| ||||||||||    
T  11907371 gagttatgatacatagacacccttaggtgacaatacacac-ctgaacactcacacaaaaatctgacatgtggtcatatggaccccgcacaagcacatttt 11907469  T
Q  295 ctcttt 300  Q
    ||||||    
T  11907470 ctcttt 11907475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 36331407 - 36331359
Alignment:
Q  218 ttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtgg 267  Q
    |||||||||||  ||||| |||||||||||||||||||||| ||||||||    
T  36331407 ttaggtggcaatgcaccc-cttgacacccacacaaaaatctgacatgtgg 36331359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 256
Target Start/End: Complemental strand, 33118951 - 33118892
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaat 256  Q
    |||| ||||||||| |||| | ||||||| ||| ||||||| |||||||||||||||||||    
T  33118951 gagttatgatacatagacacccttaggtgacaatacaccct-ttgacacccacacaaaaat 33118892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 196 - 306
Target Start/End: Complemental strand, 17820104 - 17819994
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||| ||||||||| |||| || |||||||||| |||||| |||||||||||||||||||||| ||||||||| | ||||| ||||||| | ||||||||    
T  17820104 gagttatgatacatagacaactataggtggcaatacaccc-cttgacacccacacaaaaatctgacatgtggttacgtggaccccacacaaacacatttt 17820006  T
Q  295 ctctttcatctc 306  Q
    ||||||||||||    
T  17820005 ctctttcatctc 17819994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 196 - 306
Target Start/End: Complemental strand, 33436200 - 33436090
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| | ||||||||||| ||||||| ||||||||||||||||||||||||| || || | ||||| ||| ||| |||||| |||    
T  33436200 gagtaatgatacatagacacccttaggtggcaatacaccct-ttgacacccacacaaaaatctaacacgtagtcacgtggaccccgcacaagcacacttt 33436102  T
Q  295 ctctttcatctc 306  Q
    ||||||| ||||    
T  33436101 ctctttcctctc 33436090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 196 - 300
Target Start/End: Original strand, 9058480 - 9058584
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| | ||||||||||| ||||||| ||||||||||||||||||||| ||| || || ||||||| ||| ||| |||||| |||    
T  9058480 gagtaatgatacatagacacccttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacacttt 9058578  T
Q  295 ctcttt 300  Q
    ||||||    
T  9058579 ctcttt 9058584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 196 - 307
Target Start/End: Complemental strand, 7465835 - 7465724
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| | |||| |||||| ||||||| ||||||||||||||||||||| ||| || || | ||||| ||||||| |||||| |||    
T  7465835 gagtaatgatacatagacacccttagatggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccacacaagcacacttt 7465737  T
Q  295 ctctttcatctct 307  Q
    |||||| ||||||    
T  7465736 ctcttttatctct 7465724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 197 - 306
Target Start/End: Original strand, 41575138 - 41575248
Alignment:
Q  197 agtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc--acacgagcacatttt 294  Q
    ||||||||||||| |||||| |||| ||| || ||||||| ||||||  ||||||||||| | ||||||||| ||||||||||  |||| |||||| |||    
T  41575138 agtaatgatacatagacatccttagatggtaatacaccct-ttgacattcacacaaaaatttgacatgtggtcatgtggacccctacacaagcacacttt 41575236  T
Q  295 ctctttcatctc 306  Q
    ||||||||||||    
T  41575237 ctctttcatctc 41575248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 306
Target Start/End: Original strand, 28863458 - 28863565
Alignment:
Q  199 taatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctc 297  Q
    ||||||||||| |||| | ||||||||||| ||||||| ||||||||||||||||||||| ||| || || | ||||| ||| ||| |||||| ||||||    
T  28863458 taatgatacatagacacccttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctc 28863556  T
Q  298 tttcatctc 306  Q
    ||| |||||    
T  28863557 ttttatctc 28863565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 267
Target Start/End: Complemental strand, 40614002 - 40613932
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtgg 267  Q
    |||| ||||||||| |||||| ||||||||||| ||||||| ||||||||||||||||||||| ||| ||||    
T  40614002 gagttatgatacatagacatccttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtgg 40613932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 196 - 301
Target Start/End: Complemental strand, 26891604 - 26891499
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggacc-cacacgagcacatttt 294  Q
    |||| ||||||||| | || | ||||||||||| |||||| || ||||||||||||||||||| ||||||||| | ||||||| |  || ||||||||||    
T  26891604 gagttatgatacatagccacccttaggtggcaatacaccc-ctagacacccacacaaaaatctgacatgtggtcacgtggacctcgaacaagcacatttt 26891506  T
Q  295 ctctttc 301  Q
    |||||||    
T  26891505 ctctttc 26891499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 306
Target Start/End: Original strand, 3440001 - 3440089
Alignment:
Q  218 ttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctttcatctc 306  Q
    ||||||||||| |||| | || ||||||||||||||||||||||||||| | | ||||| ||| ||| ||||||||||||||||| ||||    
T  3440001 ttaggtggcaatacactc-ctggacacccacacaaaaatctaacatgtgattacgtggaccccgcacaagcacattttctctttcctctc 3440089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 300
Target Start/End: Original strand, 17473020 - 17473124
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| | |||| |||||| ||||||| ||||||||||||||||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  17473020 gagtaatgatacatagacacccttagatggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacacttt 17473118  T
Q  295 ctcttt 300  Q
    ||||||    
T  17473119 ctcttt 17473124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 199 - 279
Target Start/End: Complemental strand, 19930917 - 19930838
Alignment:
Q  199 taatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc 279  Q
    ||||||||||| |||| | ||||||||||| ||||||| |||||| |||||||||||||| ||| || || ||||||||||    
T  19930917 taatgatacatagacacccttaggtggcaatacaccct-ttgacatccacacaaaaatctgacacgtagtcatgtggaccc 19930838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 306
Target Start/End: Original strand, 3737986 - 3738053
Alignment:
Q  240 gacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctttcatctc 306  Q
    ||||||||||||||||||| ||||||||| ||||||| ||| ||| |||||||||||| |||| ||||    
T  3737986 gacacccacacaaaaatctgacatgtggtcatgtggaccccgcacaagcacattttctttttcctctc 3738053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 279
Target Start/End: Original strand, 40701478 - 40701560
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc 279  Q
    |||||||||||||| |||| | ||||||||||| ||| ||| ||||||||||||||||||||| ||| || || | ||||||||    
T  40701478 gagtaatgatacatagacacccttaggtggcaataca-ccttttgacacccacacaaaaatctgacacgtagttacgtggaccc 40701560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 2997565 - 2997517
Alignment:
Q  218 ttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtgg 267  Q
    ||||||||||| |||||| |||||||||||||||||||||| ||||||||    
T  2997565 ttaggtggcaatacaccc-cttgacacccacacaaaaatctgacatgtgg 2997517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 196 - 300
Target Start/End: Complemental strand, 5574588 - 5574484
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| ||||   ||||||||||| ||||||| |||||||||||| |||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  5574588 gagtaatgatacatagacactcttaggtggcaatacaccct-ttgacacccacataaaaatctgacacgtagtcacgtggatcccgcacaagcacacttt 5574490  T
Q  295 ctcttt 300  Q
    ||||||    
T  5574489 ctcttt 5574484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 196 - 300
Target Start/End: Complemental strand, 10249482 - 10249378
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| | ||||||| ||| ||||| | ||||||||||||||||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  10249482 gagtaatgatacatagacacccttaggtgacaatacacctt-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 10249384  T
Q  295 ctcttt 300  Q
    ||||||    
T  10249383 ctcttt 10249378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 196 - 300
Target Start/End: Original strand, 13438343 - 13438447
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| | ||||||| ||| ||| ||| ||||||||||||||||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  13438343 gagtaatgatacatagacacccttaggtgacaatacatcct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 13438441  T
Q  295 ctcttt 300  Q
    ||||||    
T  13438442 ctcttt 13438447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 196 - 279
Target Start/End: Original strand, 20700815 - 20700897
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc 279  Q
    |||||||||||||| |||||| ||| ||||||| ||||||| ||||| || |||||||||||| ||| || || | ||||||||    
T  20700815 gagtaatgatacatagacatccttatgtggcaatacaccct-ttgactcctacacaaaaatctgacacgtagtcacgtggaccc 20700897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 196 - 279
Target Start/End: Original strand, 30915463 - 30915545
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc 279  Q
    |||||||||||||| |||| | ||||||||||| ||||||| ||||| |||||| |||||||| ||| || || | ||||||||    
T  30915463 gagtaatgatacatagacacccttaggtggcaatacaccct-ttgacccccacataaaaatctgacacgtagtcacgtggaccc 30915545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 196 - 279
Target Start/End: Complemental strand, 32505748 - 32505666
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc 279  Q
    |||||||||||||| |||| | ||||||| ||| ||||| | ||||||||||||||||||||| ||| || || | ||||||||    
T  32505748 gagtaatgatacatagacacccttaggtgacaatacacctt-ttgacacccacacaaaaatctgacacgtagtcacgtggaccc 32505666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 196 - 267
Target Start/End: Original strand, 42257193 - 42257263
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtgg 267  Q
    |||| ||||||||| |||||||||||||||||| ||| | | |||||||||||| |||||||| ||| ||||    
T  42257193 gagttatgatacatagacatctttaggtggcaatacatcat-ttgacacccacataaaaatctgacacgtgg 42257263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 196 - 267
Target Start/End: Original strand, 43490121 - 43490191
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtgg 267  Q
    |||| |||||||||  ||| | ||||||| ||| |||||| |||||||||||||||||||||| ||||||||    
T  43490121 gagttatgatacataaacacccttaggtgacaatacaccc-cttgacacccacacaaaaatctgacatgtgg 43490191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 196 - 267
Target Start/End: Complemental strand, 45097835 - 45097765
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtgg 267  Q
    |||| |||||||||  ||||| ||||||||||| ||| || ||||||||||| |||||||||| ||||||||    
T  45097835 gagttatgatacataaacatccttaggtggcaatacatcc-cttgacacccatacaaaaatctgacatgtgg 45097765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 258
Target Start/End: Original strand, 27864704 - 27864765
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatct 258  Q
    |||||||||||||| |||| | ||| ||||||| ||||||| |||||| ||||||||||||||    
T  27864704 gagtaatgatacatagacacccttatgtggcaatacaccct-ttgacatccacacaaaaatct 27864765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 258
Target Start/End: Complemental strand, 28381755 - 28381694
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatct 258  Q
    |||||||||||||| |||| | ||||||||||| ||| ||| | |||||||||||||||||||    
T  28381755 gagtaatgatacatagacacccttaggtggcaataca-cctttcgacacccacacaaaaatct 28381694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 258
Target Start/End: Original strand, 33436211 - 33436272
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatct 258  Q
    |||||||||||||| |||||| |||| |||||| ||| ||| |||||||||||| ||||||||    
T  33436211 gagtaatgatacatagacatccttagatggcaataca-ccttttgacacccacataaaaatct 33436272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 279
Target Start/End: Original strand, 38732394 - 38732436
Alignment:
Q  237 cttgacacccacacaaaaatctaacatgtggtaatgtggaccc 279  Q
    |||||||||||||||||||||| ||||||||| || |||||||    
T  38732394 cttgacacccacacaaaaatctgacatgtggtcatatggaccc 38732436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 196 - 305
Target Start/End: Complemental strand, 31953130 - 31953021
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggacc-cacacgagcacatttt 294  Q
    ||||||||||| || |||||| ||||||||||| |||||| ||||||||||||| |||||||| ||||||| | ||||||||| ||||| | |||| |||    
T  31953130 gagtaatgatagatagacatccttaggtggcaatacaccc-cttgacacccacataaaaatctgacatgtgttcatgtggacctcacacaaacacacttt 31953032  T
Q  295 ctctttcatct 305  Q
    |||||||||||    
T  31953031 ctctttcatct 31953021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 306
Target Start/End: Original strand, 12732523 - 12732592
Alignment:
Q  238 ttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctttcatctc 306  Q
    ||||||||||||||||||||| ||| ||||  ||||||| ||||||  ||||||||||||||||||||||    
T  12732523 ttgacacccacacaaaaatctgacacgtggctatgtggatcccacataagcacattttctctttcatctc 12732592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 300
Target Start/End: Original strand, 32869678 - 32869782
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||| ||||||| |||| | ||||||||||| ||||||| ||||||||||||||||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  32869678 gagtaaagatacatagacacccttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 32869776  T
Q  295 ctcttt 300  Q
    ||||||    
T  32869777 ctcttt 32869782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 191 - 267
Target Start/End: Complemental strand, 30341465 - 30341390
Alignment:
Q  191 acaacgagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtgg 267  Q
    |||| |||| |||||||||  ||| | ||||||||||| |||||| |||||||||||||||||||||| ||||||||    
T  30341465 acaaagagttatgatacataaacacccttaggtggcaatacaccc-cttgacacccacacaaaaatctgacatgtgg 30341390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 267
Target Start/End: Complemental strand, 15508124 - 15508054
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtgg 267  Q
    |||| |||||||||  ||| | ||||||||||| |||||| |||||||||||||||||||||| ||||||||    
T  15508124 gagttatgatacataaacacccttaggtggcaatacaccc-cttgacacccacacaaaaatctgacatgtgg 15508054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 267
Target Start/End: Complemental strand, 15990142 - 15990072
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtgg 267  Q
    |||| |||||||||  ||| | ||||||||||| |||||| |||||||||||||||||||||| ||||||||    
T  15990142 gagttatgatacataaacacccttaggtggcaatacaccc-cttgacacccacacaaaaatctgacatgtgg 15990072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 305
Target Start/End: Complemental strand, 28536582 - 28536479
Alignment:
Q  200 aatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctct 298  Q
    ||||||||||  ||||| ||||||||||| ||| || |||||||||||||||||||||| |||   ||| ||||||| ||||||| |||||| |||||||    
T  28536582 aatgatacataaacatccttaggtggcaatacaacc-cttgacacccacacaaaaatctgaca--cggtcatgtggaccccacacaagcacactttctct 28536486  T
Q  299 ttcatct 305  Q
    || ||||    
T  28536485 tttatct 28536479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 300
Target Start/End: Complemental strand, 22880755 - 22880654
Alignment:
Q  199 taatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctc 297  Q
    ||||||||||| |||| | ||||||||||| ||||||| ||||||||||||||||| ||| ||| || || | ||||| ||| ||| |||||| ||||||    
T  22880755 taatgatacatagacacccttaggtggcaatacaccct-ttgacacccacacaaaattctgacacgtagtcacgtggaccccgcacaagcacactttctc 22880657  T
Q  298 ttt 300  Q
    |||    
T  22880656 ttt 22880654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 196 - 300
Target Start/End: Original strand, 17598554 - 17598658
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| | ||||||||||| ||| | | ||||||||||||||||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  17598554 gagtaatgatacatagacacccttaggtggcaatacatctt-ttgacacccacacaaaaatctgacacgttgtcacgtggaccccgcacaagcacacttt 17598652  T
Q  295 ctcttt 300  Q
    ||||||    
T  17598653 ctcttt 17598658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 268
Target Start/End: Original strand, 31976248 - 31976319
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggt 268  Q
    |||| ||||||||| |||||| ||||||||||| | ||||| || |||||||||||||||||| ||| |||||    
T  31976248 gagttatgatacatagacatccttaggtggcaatataccct-ttaacacccacacaaaaatctgacacgtggt 31976319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 258
Target Start/End: Original strand, 29857827 - 29857888
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatct 258  Q
    |||||||||||||| |||| |||||| |||||| ||| ||| || ||||||||||||||||||    
T  29857827 gagtaatgatacatagacacctttagatggcaataca-ccttttaacacccacacaaaaatct 29857888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 305
Target Start/End: Complemental strand, 9379807 - 9379703
Alignment:
Q  201 atgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggacc-cacacgagcacattttctctt 299  Q
    ||||||||| |||||| |||| || ||| ||| || ||||||||||| |||||||| | ||| ||||  ||||||| | ||||| | |||||||||||||    
T  9379807 atgatacatagacatccttagatgacaatacatcc-cttgacacccatacaaaaatttgacacgtggccatgtggatctcacacaaacacattttctctt 9379709  T
Q  300 tcatct 305  Q
    ||||||    
T  9379708 tcatct 9379703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 300
Target Start/End: Original strand, 11427616 - 11427722
Alignment:
Q  196 gagtaatgatacatggacatctt--taggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatt 292  Q
    |||||||||||||| |||| | |  |||||||||| ||| ||| ||||||||||||||||||||| ||| || || | ||||| ||| ||| |||||| |    
T  11427616 gagtaatgatacatagacaccctcttaggtggcaatacatcct-ttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacact 11427714  T
Q  293 ttctcttt 300  Q
    ||||||||    
T  11427715 ttctcttt 11427722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 196 - 268
Target Start/End: Complemental strand, 50526271 - 50526200
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggt 268  Q
    |||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||| ||| |||||    
T  50526271 gagtaatgatacatagacatctttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtggt 50526200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 196 - 306
Target Start/End: Complemental strand, 50052528 - 50052418
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||||| ||||||||||| ||||||| ||||||||||||||||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  50052528 gagtaatgatacatagacatccttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 50052430  T
Q  295 ctctttcatctc 306  Q
    ||||||| ||||    
T  50052429 ctctttcctctc 50052418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 196 - 300
Target Start/End: Original strand, 6034044 - 6034148
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| | ||||||||||| ||||||| ||||||||||||||||||||| |||||| || | ||||| ||| ||| |||||| |||    
T  6034044 gagtaatgatacatagacacccttaggtggcaatacaccct-ttgacacccacacaaaaatctgacatgtagtcacgtggatcccgcacaagcacacttt 6034142  T
Q  295 ctcttt 300  Q
    ||||||    
T  6034143 ctcttt 6034148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 196 - 306
Target Start/End: Original strand, 29239886 - 29239996
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| | ||||||||||| ||||| | |||||| |||||||||||||||||| || || | ||||| ||||||| |||||| |||    
T  29239886 gagtaatgatacatagacacccttaggtggcaatacaccat-ttgacatccacacaaaaatctaacacgtagtcacgtggaccccacacaagcacacttt 29239984  T
Q  295 ctctttcatctc 306  Q
    ||||||| ||||    
T  29239985 ctctttcctctc 29239996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 196 - 301
Target Start/End: Original strand, 3481654 - 3481759
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| ||||||||||||| |||| || ||||||||||||||||||||| |||  | || | ||||| ||||||| |||||| |||    
T  3481654 gagtaatgatacatagacacctttaggtggcaatacactct-ttgacacccacacaaaaatctgacacatagtcacgtggaccccacacaagcacacttt 3481752  T
Q  295 ctctttc 301  Q
    |||||||    
T  3481753 ctctttc 3481759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 267
Target Start/End: Original strand, 55475191 - 55475261
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtgg 267  Q
    |||| |||||||||  ||||| ||||||||||| ||||||| ||||||||||||||||||||| ||||||||    
T  55475191 gagttatgatacataaacatccttaggtggcaatacaccct-ttgacacccacacaaaaatctgacatgtgg 55475261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 300
Target Start/End: Complemental strand, 11511562 - 11511458
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| | ||||||||||| ||||||| |||||||||||| |||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  11511562 gagtaatgatacatagacacccttaggtggcaatacaccct-ttgacacccacataaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 11511464  T
Q  295 ctcttt 300  Q
    ||||||    
T  11511463 ctcttt 11511458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 300
Target Start/End: Complemental strand, 48183149 - 48183045
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| | ||| ||||||| ||||||| ||||||||||||||||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  48183149 gagtaatgatacatagacacccttacgtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 48183051  T
Q  295 ctcttt 300  Q
    ||||||    
T  48183050 ctcttt 48183045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 279
Target Start/End: Complemental strand, 480547 - 480465
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc 279  Q
    |||||||||||||| |||| | ||||||| ||| ||||||| ||||||||||||||||||||| ||| || || | ||||||||    
T  480547 gagtaatgatacatagacacccttaggtgacaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccc 480465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 267
Target Start/End: Complemental strand, 29548059 - 29547989
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtgg 267  Q
    |||| |||||||||  ||||| ||||||||||| ||| || |||||||||||||||||||||| ||||||||    
T  29548059 gagttatgatacataaacatccttaggtggcaatacatcc-cttgacacccacacaaaaatctgacatgtgg 29547989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 305
Target Start/End: Original strand, 29977908 - 29977994
Alignment:
Q  219 taggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc-acacgagcacattttctctttcatct 305  Q
    |||||||||| |||||| ||| |||||||||||||||||| ||| || || || ||||||| |||| |||||| ||||||||||||||    
T  29977908 taggtggcaatacaccc-cttaacacccacacaaaaatctgacacgtagtcatatggaccccacacaagcacactttctctttcatct 29977994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 279
Target Start/End: Complemental strand, 54473633 - 54473551
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc 279  Q
    |||||||||||||| |||| | ||||||| ||| ||||| | ||||||||||||||||||||||||| || || | ||||||||    
T  54473633 gagtaatgatacatagacacccttaggtgacaatacaccat-ttgacacccacacaaaaatctaacacgtagtcacgtggaccc 54473551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 241 - 306
Target Start/End: Complemental strand, 18769103 - 18769037
Alignment:
Q  241 acacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctttcatctc 306  Q
    |||||||||||||||||| ||||||||| ||||  | ||||||| | ||||||||||||||||||||    
T  18769103 acacccacacaaaaatctgacatgtggtcatgtaaatcccacacaaacacattttctctttcatctc 18769037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 258
Target Start/End: Original strand, 40574779 - 40574840
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatct 258  Q
    |||| ||||||||| |||||| |||||||| || ||||||| |||||||||||||||||||||    
T  40574779 gagttatgatacatagacatccttaggtggtaatacaccct-ttgacacccacacaaaaatct 40574840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 300
Target Start/End: Original strand, 41236346 - 41236451
Alignment:
Q  195 cgagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattt 293  Q
    ||||||||||||||| |||| | ||||||||||| ||| ||| |||||| |||||||||||||| ||| || || | ||||| ||| ||| |||||| ||    
T  41236346 cgagtaatgatacatagacacccttaggtggcaataca-ccttttgacatccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactt 41236444  T
Q  294 tctcttt 300  Q
    |||||||    
T  41236445 tctcttt 41236451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 267
Target Start/End: Complemental strand, 17983821 - 17983773
Alignment:
Q  218 ttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtgg 267  Q
    ||||||||||| |||||| |||||||||||||||||||||| ||||||||    
T  17983821 ttaggtggcaatacaccc-cttgacacccacacaaaaatctgacatgtgg 17983773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 196 - 300
Target Start/End: Complemental strand, 24995207 - 24995103
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    ||||||||||| ||||||| | |||| |||||| ||||||| |||||||||||| |||||| | ||| || || | ||||| ||| ||| ||||||||||    
T  24995207 gagtaatgatatatggacacccttagatggcaatacaccct-ttgacacccacataaaaatttgacacgtagtcacgtggaccccgcacaagcacatttt 24995109  T
Q  295 ctcttt 300  Q
    ||||||    
T  24995108 ctcttt 24995103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 301
Target Start/End: Complemental strand, 55079814 - 55079708
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga--cccacacgagcacattt 293  Q
    |||| |||||||||  ||| | ||||||||||| ||||| |||||||||||| |||||||||| ||||||||  || ||||  ||||||| || ||| ||    
T  55079814 gagttatgatacataaacacccttaggtggcaatacacc-tcttgacacccatacaaaaatctgacatgtggccatatggacccccacacaagtacactt 55079716  T
Q  294 tctctttc 301  Q
    ||||||||    
T  55079715 tctctttc 55079708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 196 - 267
Target Start/End: Complemental strand, 19670816 - 19670746
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtgg 267  Q
    |||| |||||||||  ||| | ||||||||||| |||||| |||||||| ||||||||||||| ||||||||    
T  19670816 gagttatgatacataaacacccttaggtggcaatacaccc-cttgacactcacacaaaaatctgacatgtgg 19670746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 258
Target Start/End: Original strand, 31910192 - 31910253
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatct 258  Q
    |||| ||||||||| |||||| ||||||| ||| |||| || |||||||||||||||||||||    
T  31910192 gagttatgatacatagacatccttaggtgacaatacactct-ttgacacccacacaaaaatct 31910253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 300
Target Start/End: Complemental strand, 42044476 - 42044363
Alignment:
Q  187 tttaacaacgagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacga 285  Q
    ||||| || |||||||||||||| |||| | ||||||||||| ||| ||| |  |||||||||||||||||| ||| || || | ||||| ||| ||| |    
T  42044476 tttaaaaaagagtaatgatacatagacacccttaggtggcaatacatcct-tgtacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaa 42044378  T
Q  286 gcacattttctcttt 300  Q
    ||||| |||||||||    
T  42044377 gcacactttctcttt 42044363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 268
Target Start/End: Complemental strand, 50813970 - 50813921
Alignment:
Q  218 ttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggt 268  Q
    |||||||| || |||||| |||||||||||||||||||||| |||||||||    
T  50813970 ttaggtggtaatacaccc-cttgacacccacacaaaaatctgacatgtggt 50813921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 267
Target Start/End: Original strand, 32766980 - 32767028
Alignment:
Q  218 ttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtgg 267  Q
    ||||||||||| |||||| ||||||||||| |||||||||| ||||||||    
T  32766980 ttaggtggcaatacaccc-cttgacacccatacaaaaatctgacatgtgg 32767028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 268
Target Start/End: Complemental strand, 44536845 - 44536775
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggt 268  Q
    |||| |||||||||  |||  |||||||||||| |||||||  ||||| |||||||||||||| |||||||||    
T  44536845 gagttatgatacataaacacttttaggtggcaatacaccct--tgacatccacacaaaaatctgacatgtggt 44536775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 306
Target Start/End: Complemental strand, 48647789 - 48647716
Alignment:
Q  234 cctcttgacacccacacaaaaatctaacatgtggtaatgtggac-ccacacgagcacattttctctttcatctc 306  Q
    |||||| ||||||||| |||||||||||| ||||| | |||||| || ||| |||||| |||||||||| ||||    
T  48647789 cctcttaacacccacataaaaatctaacacgtggtcacgtggactccgcacaagcacaatttctctttcctctc 48647716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 267
Target Start/End: Complemental strand, 8343264 - 8343193
Alignment:
Q  195 cgagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtgg 267  Q
    ||||| |||||||||  ||||| ||||||||||| ||| ||| |||||||| ||| |||||||| ||||||||    
T  8343264 cgagttatgatacataaacatccttaggtggcaatacatcct-ttgacacctacataaaaatctgacatgtgg 8343193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 196 - 306
Target Start/End: Original strand, 37038479 - 37038589
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  37038479 gagtaatgatacatagacatctttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacacttt 37038577  T
Q  295 ctctttcatctc 306  Q
    || |||| ||||    
T  37038578 ctatttcctctc 37038589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 196 - 300
Target Start/End: Complemental strand, 43414681 - 43414577
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||| ||||||||| |||||| |||| |||||| ||||||| ||||||||||||||||||||||||| ||||| |  |||| ||| ||| |||||| |||    
T  43414681 gagttatgatacatagacatccttagatggcaacacaccct-ttgacacccacacaaaaatctaacacgtggtcacatggatcccgcacaagcacacttt 43414583  T
Q  295 ctcttt 300  Q
    ||||||    
T  43414582 ctcttt 43414577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 195 - 300
Target Start/End: Complemental strand, 1180041 - 1179936
Alignment:
Q  195 cgagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattt 293  Q
    ||||||||||||||| |||| | |||||||| || ||||||| ||||||||||||||||||||| ||| || || |||||||  || ||| |||||| ||    
T  1180041 cgagtaatgatacatagacacccttaggtggtaatacaccct-ttgacacccacacaaaaatctgacacgtagtcatgtggattccgcacaagcacactt 1179943  T
Q  294 tctcttt 300  Q
    |||||||    
T  1179942 tctcttt 1179936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 197 - 306
Target Start/End: Original strand, 5957831 - 5957940
Alignment:
Q  197 agtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttc 295  Q
    ||||||||||||| |||||  ||||||||||| ||||||| ||||||||||||||||||||| ||| || || | ||||| ||| ||| | |||| ||||    
T  5957831 agtaatgatacatagacattcttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaatcacactttc 5957929  T
Q  296 tctttcatctc 306  Q
    |||||| ||||    
T  5957930 tctttcctctc 5957940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 300
Target Start/End: Original strand, 12831047 - 12831151
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| | ||||||| ||| ||||||| ||||||||||||||||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  12831047 gagtaatgatacatagacacccttaggtgacaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 12831145  T
Q  295 ctcttt 300  Q
    ||||||    
T  12831146 ctcttt 12831151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 300
Target Start/End: Original strand, 15197333 - 15197437
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| ||||   ||||||||||| ||||||| ||||||||||||||||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  15197333 gagtaatgatacatagacactcttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 15197431  T
Q  295 ctcttt 300  Q
    ||||||    
T  15197432 ctcttt 15197437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 300
Target Start/End: Complemental strand, 40424043 - 40423939
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| || | | ||||||||||| ||||||| |||||| |||||||||||||| ||| || || ||||||| ||| ||| |||||| |||    
T  40424043 gagtaatgatacatagatacccttaggtggcaatacaccct-ttgacatccacacaaaaatctgacacgtagtcatgtggaccccgcacaagcacacttt 40423945  T
Q  295 ctcttt 300  Q
    ||||||    
T  40423944 ctcttt 40423939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 279
Target Start/End: Complemental strand, 504221 - 504139
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc 279  Q
    |||||||||||||| |||| | ||||||||||| ||| ||| ||||||||||||||||||||| ||| || || | ||||||||    
T  504221 gagtaatgatacatagacacccttaggtggcaataca-ccttttgacacccacacaaaaatctgacacgtagtcacgtggaccc 504139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 267
Target Start/End: Original strand, 16383377 - 16383447
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtgg 267  Q
    |||| |||||||||  ||| | ||||||||||| |||||| |||||||||||||||||||||| ||||||||    
T  16383377 gagttatgatacataaacacccttaggtggcaatacaccc-cttgacacccacacaaaaatctgacatgtgg 16383447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 267
Target Start/End: Original strand, 34307216 - 34307286
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtgg 267  Q
    |||| |||||||||  ||| | ||||||||||| |||||| |||||||||||||||||||||| ||||||||    
T  34307216 gagttatgatacataaacacccttaggtggcaatacaccc-cttgacacccacacaaaaatctgacatgtgg 34307286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 218 - 306
Target Start/End: Complemental strand, 8841510 - 8841422
Alignment:
Q  218 ttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctttcatctc 306  Q
    ||||||||||  ||||||| ||||||||||||||||||||||||| || || | ||||| ||| ||| |||||| |||||||||| ||||    
T  8841510 ttaggtggcagtacaccct-ttgacacccacacaaaaatctaacacgtagtcacgtggaccccgcacaagcacactttctctttcctctc 8841422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 201 - 258
Target Start/End: Complemental strand, 10621182 - 10621126
Alignment:
Q  201 atgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatct 258  Q
    ||||||||| |||||| |||||||| || ||||||| |||||||||||||||||||||    
T  10621182 atgatacatagacatccttaggtggtaatacaccct-ttgacacccacacaaaaatct 10621126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 196 - 300
Target Start/End: Original strand, 14547922 - 14548026
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||| ||||||| |||| | ||||||||||| ||||| | ||||||||||||||||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  14547922 gagtaaagatacatagacacccttaggtggcaatacaccat-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 14548020  T
Q  295 ctcttt 300  Q
    ||||||    
T  14548021 ctcttt 14548026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 196 - 300
Target Start/End: Complemental strand, 34012396 - 34012292
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| | |||||||| || ||||||| ||||||||||||||||||| | ||| || || | ||||| ||| ||| |||||| |||    
T  34012396 gagtaatgatacatagacacccttaggtggtaatacaccct-ttgacacccacacaaaaatttgacacgtagtcacgtggatcccgcacaagcacacttt 34012298  T
Q  295 ctcttt 300  Q
    ||||||    
T  34012297 ctcttt 34012292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 256
Target Start/End: Complemental strand, 20075034 - 20074975
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaat 256  Q
    |||||||||||||| |||||| ||||||||||| |||| || |||||||||||| ||||||    
T  20075034 gagtaatgatacatagacatccttaggtggcaatacactct-ttgacacccacataaaaat 20074975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 196 - 267
Target Start/End: Complemental strand, 4854963 - 4854893
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtgg 267  Q
    |||||||||||||| |||||| ||||||||||| ||||||| || ||||| ||| |||||||| | ||||||    
T  4854963 gagtaatgatacatagacatccttaggtggcaatacaccct-ttaacacctacataaaaatctgatatgtgg 4854893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 196 - 279
Target Start/End: Complemental strand, 23122697 - 23122615
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc 279  Q
    |||||||||||||| |||| | ||| ||||||| ||||| | ||||||||||||||||||||| ||| || || | ||||||||    
T  23122697 gagtaatgatacatagacacccttaagtggcaatacacctt-ttgacacccacacaaaaatctgacacgtagtcacgtggaccc 23122615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 258
Target Start/End: Complemental strand, 15048281 - 15048221
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatct 258  Q
    |||| ||||||||| |||||| ||||||||||| ||||||| |||||| ||||||||||||||    
T  15048281 gagttatgatacatagacatccttaggtggcaatacaccct-ttgaca-ccacacaaaaatct 15048221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 305
Target Start/End: Original strand, 17443825 - 17443934
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||| ||||||||| |||| | ||||||| ||| ||||  |||| |||| ||||||||||||| |||||| || ||||||| ||||||| |  ||| |||    
T  17443825 gagttatgatacatagacaaccttaggtgacaatacact-tcttaacactcacacaaaaatctgacatgtagtcatgtggaccccacacaaagacacttt 17443923  T
Q  295 ctctttcatct 305  Q
    |||||||||||    
T  17443924 ctctttcatct 17443934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 279
Target Start/End: Complemental strand, 14055693 - 14055610
Alignment:
Q  195 cgagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc 279  Q
    ||||| ||||||||| |||| | ||||||| ||| |||| | ||||||| |||||||||||||| |||||| || | ||||||||    
T  14055693 cgagttatgatacattgacacccttaggtgacaatacactc-cttgacatccacacaaaaatcttacatgtagtcacgtggaccc 14055610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 196 - 306
Target Start/End: Complemental strand, 51898783 - 51898673
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  51898783 gagtaatgatacatagacatctttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacacttt 51898685  T
Q  295 ctctttcatctc 306  Q
    || |||| ||||    
T  51898684 ctatttcctctc 51898673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 196 - 268
Target Start/End: Original strand, 37649198 - 37649269
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggt 268  Q
    |||||||||||||| |||||||||||||||||| |||| || ||||||||||||||||||||| ||| |||||    
T  37649198 gagtaatgatacatagacatctttaggtggcaatacactct-ttgacacccacacaaaaatctgacacgtggt 37649269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 196 - 300
Target Start/End: Complemental strand, 47452420 - 47452316
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| | |||||||| || ||||||| ||||||||||||||||||||||||| || || | ||||| ||| ||| |||||| |||    
T  47452420 gagtaatgatacatagacacccttaggtggtaatacaccct-ttgacacccacacaaaaatctaacacgtagtcacgtggatcccgcacaagcacacttt 47452322  T
Q  295 ctcttt 300  Q
    ||||||    
T  47452321 ctcttt 47452316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 279
Target Start/End: Original strand, 2581915 - 2581997
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc 279  Q
    |||||||||||||| |||| | ||||||||||| ||||||| ||||||||||||||||||||| ||| || || | ||||||||    
T  2581915 gagtaatgatacatagacacccttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccc 2581997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 279
Target Start/End: Complemental strand, 9474976 - 9474894
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc 279  Q
    |||||||||||||| |||| | ||||||||||| ||||||| ||||||||||||||||||||| ||| || || | ||||||||    
T  9474976 gagtaatgatacatagacacccttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccc 9474894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 279
Target Start/End: Original strand, 38595154 - 38595236
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc 279  Q
    ||||||||||||||  ||| ||||||||||||| ||||||| ||||||||||||||||||||| ||| || || | ||||||||    
T  38595154 gagtaatgatacataaacacctttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccc 38595236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 196 - 258
Target Start/End: Complemental strand, 27564835 - 27564774
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatct 258  Q
    |||||||||||||| |||||| ||||||||||| ||| ||| |||||||||||||||||||||    
T  27564835 gagtaatgatacatagacatccttaggtggcaataca-ccttttgacacccacacaaaaatct 27564774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 201 - 306
Target Start/End: Original strand, 44453984 - 44454089
Alignment:
Q  201 atgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctt 299  Q
    ||||||||| |||| ||||| ||||||| ||| | |||||| |||||||||||||||| ||||||||| | ||||| ||||||| |||||| ||| ||||    
T  44453984 atgatacatagacacctttaagtggcaatacatc-tcttgatacccacacaaaaatctgacatgtggttacgtggatcccacacaagcacactttttctt 44454082  T
Q  300 tcatctc 306  Q
    || ||||    
T  44454083 tcctctc 44454089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 199 - 300
Target Start/End: Complemental strand, 44548473 - 44548372
Alignment:
Q  199 taatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctc 297  Q
    ||||||||||| |||||||||||||||||| ||||| | |||| |||||||||||||||| ||| || || | ||||| ||| ||| |||||| ||||||    
T  44548473 taatgatacatagacatctttaggtggcaatacaccat-ttgatacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctc 44548375  T
Q  298 ttt 300  Q
    |||    
T  44548374 ttt 44548372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 300
Target Start/End: Complemental strand, 8346488 - 8346384
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc-acacgagcacatttt 294  Q
    |||||||||||||| | || ||||||||||||| ||||| | ||||||||||||||||||||| ||| || || | ||||||||  ||| |||||| |||    
T  8346488 gagtaatgatacatagtcacctttaggtggcaatacaccat-ttgacacccacacaaaaatctgacacgtagtcacgtggaccctgcacaagcacacttt 8346390  T
Q  295 ctcttt 300  Q
    ||||||    
T  8346389 ctcttt 8346384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 300
Target Start/End: Original strand, 32813247 - 32813351
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||| ||||||||| |||||| ||||||||||| ||||||| || |||||||||||||||||| ||| ||||| |  |||| ||| ||| |||||| |||    
T  32813247 gagttatgatacatagacatccttaggtggcaatacaccct-ttaacacccacacaaaaatctgacacgtggtcacatggaccccgcacaagcacacttt 32813345  T
Q  295 ctcttt 300  Q
    ||||||    
T  32813346 ctcttt 32813351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 195 - 279
Target Start/End: Original strand, 3000318 - 3000401
Alignment:
Q  195 cgagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc 279  Q
    |||||||||||||||  ||| | ||||||||||| ||||||| ||||||||||||||||||||| ||| || || | ||||||||    
T  3000318 cgagtaatgatacataaacacccttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccc 3000401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 279
Target Start/End: Complemental strand, 5959100 - 5959018
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc 279  Q
    |||| |||||||||  ||| | ||| ||||||| ||||| ||||||||||||||||||||||| ||||||||| || |||||||    
T  5959100 gagttatgatacataaacacccttaagtggcaatacacc-tcttgacacccacacaaaaatctgacatgtggtcatatggaccc 5959018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 300
Target Start/End: Original strand, 13414802 - 13414865
Alignment:
Q  238 ttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctcttt 300  Q
    ||||||||||||||||||||||||| || || | ||||| ||||||| ||||||||||||||||    
T  13414802 ttgacacccacacaaaaatctaacacgtagtcacgtggaccccacacaagcacattttctcttt 13414865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 267
Target Start/End: Complemental strand, 41608593 - 41608523
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtgg 267  Q
    |||| |||||||||  ||||| ||||||||||| |||||| |||||||| ||||||||||||| ||||||||    
T  41608593 gagttatgatacataaacatccttaggtggcaatacaccc-cttgacactcacacaaaaatctgacatgtgg 41608523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 267
Target Start/End: Complemental strand, 50591100 - 50591030
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtgg 267  Q
    |||| |||||||||  ||| | ||||||||||| |||||| |||||||||||||||||||||| ||||||||    
T  50591100 gagttatgatacataaacacccttaggtggcaatacaccc-cttgacacccacacaaaaatctgacatgtgg 50591030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 196 - 267
Target Start/End: Complemental strand, 23597191 - 23597121
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtgg 267  Q
    |||||||||||||| |||||| ||||||||||| |||| || |||| ||||||| |||||||| ||| ||||    
T  23597191 gagtaatgatacatagacatcattaggtggcaatacactct-ttgatacccacataaaaatctgacacgtgg 23597121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 196 - 279
Target Start/End: Complemental strand, 48716382 - 48716300
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc 279  Q
    |||||||||||||| |||| | ||||||||||| ||||| | |||||| |||||||||||||| ||| || || | ||||||||    
T  48716382 gagtaatgatacatagacacccttaggtggcaatacaccat-ttgacatccacacaaaaatctgacacgtagtcacgtggaccc 48716300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 196 - 300
Target Start/End: Original strand, 2740274 - 2740378
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||||| ||||||||||| ||||||| ||||||||||||||||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  2740274 gagtaatgatacatagacatccttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacacttt 2740372  T
Q  295 ctcttt 300  Q
    ||||||    
T  2740373 ctcttt 2740378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 196 - 300
Target Start/End: Original strand, 6679698 - 6679802
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||| ||||||||| |||||||||||||||||| ||| ||| ||||||||||||||||||||| ||| ||||| |  |||| ||| ||| | ||||||||    
T  6679698 gagttatgatacatagacatctttaggtggcaataca-ccttttgacacccacacaaaaatctgacacgtggtcacatggaccccgcacaaacacatttt 6679796  T
Q  295 ctcttt 300  Q
    ||||||    
T  6679797 ctcttt 6679802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 199 - 306
Target Start/End: Complemental strand, 18520981 - 18520874
Alignment:
Q  199 taatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctc 297  Q
    ||||||||||| |||| | ||||||||||| ||||||| ||||||||||||||||||||| ||| || || | ||||| ||| ||| |||||| ||||||    
T  18520981 taatgatacatagacacccttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacactttctc 18520883  T
Q  298 tttcatctc 306  Q
    ||| |||||    
T  18520882 ttttatctc 18520874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 196 - 268
Target Start/End: Original strand, 28177775 - 28177846
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggt 268  Q
    |||| ||||||||| |||||| ||||||||||| ||||||| ||||||||||||||||||||| ||| |||||    
T  28177775 gagttatgatacatagacatccttaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtggt 28177846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 267
Target Start/End: Complemental strand, 2252268 - 2252198
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtgg 267  Q
    |||| |||||||||  ||||| ||||||||||| |||||| |||||||||||||||||||||| ||||||||    
T  2252268 gagttatgatacataaacatccttaggtggcaatacaccc-cttgacacccacacaaaaatctgacatgtgg 2252198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 279
Target Start/End: Complemental strand, 42414402 - 42414320
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc 279  Q
    |||||||||||||| |||| |  |||||||||| ||||||| ||||||||||||||||||||| ||| || || ||||||||||    
T  42414402 gagtaatgatacatagacaccagtaggtggcaatacaccct-ttgacacccacacaaaaatctgacacgtagtcatgtggaccc 42414320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 191 - 267
Target Start/End: Complemental strand, 3921370 - 3921295
Alignment:
Q  191 acaacgagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtgg 267  Q
    |||| |||| |||||||||  ||| | ||||||||||| |||||| |||||||||||||||||||||| ||||||||    
T  3921370 acaaagagttatgatacataaacacccttaggtggcaatacaccc-cttgacacccacacaaaaatctgacatgtgg 3921295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 306
Target Start/End: Complemental strand, 35943992 - 35943882
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||| ||||||||| |||| | ||||||||||| ||| | | ||||||||||||||||||||| ||| || || | ||||| ||||||| |||||| |||    
T  35943992 gagttatgatacatagacacccttaggtggcaatacatcat-ttgacacccacacaaaaatctgacacgtagttacgtggatcccacacaagcacacttt 35943894  T
Q  295 ctctttcatctc 306  Q
    ||||||| ||||    
T  35943893 ctctttcctctc 35943882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 197 - 256
Target Start/End: Complemental strand, 36875702 - 36875644
Alignment:
Q  197 agtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaat 256  Q
    ||||||||||||| |||| | ||||||||||| ||||||| |||||||||||||||||||    
T  36875702 agtaatgatacatagacacccttaggtggcaatacaccct-ttgacacccacacaaaaat 36875644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 258
Target Start/End: Original strand, 35785199 - 35785260
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatct 258  Q
    |||||||||||||| |||| | ||||||||||| ||| ||| |||||||||||||||||||||    
T  35785199 gagtaatgatacatagacacccttaggtggcaataca-ccttttgacacccacacaaaaatct 35785260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 258
Target Start/End: Complemental strand, 36733042 - 36732981
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatct 258  Q
    |||||||||||||| |||| | |||||| |||| ||||||| |||||||||||||||||||||    
T  36733042 gagtaatgatacatagacacccttaggtagcaatacaccct-ttgacacccacacaaaaatct 36732981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 201 - 258
Target Start/End: Original strand, 10356639 - 10356696
Alignment:
Q  201 atgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatct 258  Q
    ||||||||| |||||| ||||||||||| ||| ||  |||||||||||||||||||||    
T  10356639 atgatacatagacatccttaggtggcaatacatcccattgacacccacacaaaaatct 10356696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 196 - 300
Target Start/End: Complemental strand, 33149738 - 33149634
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| | |||||||| || ||||||| ||||||||||||||||||| | ||| || || | ||||| ||| ||| |||||| |||    
T  33149738 gagtaatgatacatagacacccttaggtggtaatacaccct-ttgacacccacacaaaaatttgacacgtagtcacgtggatcccgcacaagcacacttt 33149640  T
Q  295 ctcttt 300  Q
    ||||||    
T  33149639 ctcttt 33149634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 196 - 300
Target Start/End: Original strand, 40145407 - 40145511
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| | ||||||||||| ||||||| || ||| |||||||||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  40145407 gagtaatgatacatagacacccttaggtggcaatacaccct-ttaacatccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 40145505  T
Q  295 ctcttt 300  Q
    ||||||    
T  40145506 ctcttt 40145511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 258
Target Start/End: Original strand, 14831814 - 14831875
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatct 258  Q
    |||||||||||||| ||||   ||||||||||| ||||||| |||||||||||| ||||||||    
T  14831814 gagtaatgatacatagacactcttaggtggcaatacaccct-ttgacacccacataaaaatct 14831875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 303
Target Start/End: Original strand, 25831334 - 25831392
Alignment:
Q  246 cacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctttcat 303  Q
    |||| |||||||||||| ||||| ||||||| ||||||| | |||||||||||||||||    
T  25831334 cacaaaaaaatctaacacgtggtcatgtggaccccacacaaacacattttctctttcat 25831392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 305
Target Start/End: Complemental strand, 33825424 - 33825315
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggacc-cacacgagcacatttt 294  Q
    |||||||||| ||| |||||  ||||||||||| |||| | ||||||||||||| |||||||| ||| ||| | ||||| |||  |||| |||||| |||    
T  33825424 gagtaatgatgcatagacattcttaggtggcaatacactc-cttgacacccacataaaaatctgacacgtgttcatgtgaaccttacacaagcacacttt 33825326  T
Q  295 ctctttcatct 305  Q
    |||||| ||||    
T  33825325 ctcttttatct 33825315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 299
Target Start/End: Original strand, 13811652 - 13811755
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||| ||||||| |||| | ||||||||||| ||| | | ||||||||||||||||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  13811652 gagtaaagatacatagacacccttaggtggcaatacatcat-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 13811750  T
Q  295 ctctt 299  Q
    |||||    
T  13811751 ctctt 13811755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 196 - 300
Target Start/End: Original strand, 3434562 - 3434666
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||||| ||||||||||| ||||||| |||||||||||||||||| || ||| || || | ||||| ||| ||| |||||| |||    
T  3434562 gagtaatgatacatagacatccttaggtggcaatacaccct-ttgacacccacacaaaaaactgacacgtagtcacgtggatcccgcacaagcacacttt 3434660  T
Q  295 ctcttt 300  Q
    ||||||    
T  3434661 ctcttt 3434666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 196 - 300
Target Start/End: Complemental strand, 36362013 - 36361909
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| | ||||||||||| ||| ||| ||||||||||||||||||||| ||| || || | ||||| ||||||| |||||| |||    
T  36362013 gagtaatgatacatagacacccttaggtggcaatacatcct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccacacaagcacacttt 36361915  T
Q  295 ctcttt 300  Q
    ||||||    
T  36361914 ctcttt 36361909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 306
Target Start/End: Original strand, 18207180 - 18207289
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||| ||||||||| |||| | ||||||||||| ||||| |||||||||||| |||||||||||||| ||||  | ||| | ||||||| |||||| |||    
T  18207180 gagttatgatacatagacaaccttaggtggcaatacacc-tcttgacacccatacaaaaatctaacacgtgg-cacgtgaaccccacacaagcacacttt 18207277  T
Q  295 ctctttcatctc 306  Q
    ||||||||||||    
T  18207278 ctctttcatctc 18207289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 279
Target Start/End: Original strand, 35137533 - 35137615
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc 279  Q
    ||||||||||| || |||| | ||||||||||| ||||||| ||||||||||||||||||||||||| || || | ||||||||    
T  35137533 gagtaatgataaatagacacccttaggtggcaatacaccct-ttgacacccacacaaaaatctaacacgtagtcacgtggaccc 35137615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 196 - 279
Target Start/End: Complemental strand, 40846213 - 40846131
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc 279  Q
    |||| |||||||||  ||||| ||||||||||| |||||| ||||||| ||||||||||||||||||||| || || |||||||    
T  40846213 gagttatgatacataaacatccttaggtggcaatacaccc-cttgacatccacacaaaaatctaacatgtagttatatggaccc 40846131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 196 - 258
Target Start/End: Original strand, 19329842 - 19329903
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatct 258  Q
    |||||||||||||| |||||| ||||||||||| ||| ||| |||||||||||||||||||||    
T  19329842 gagtaatgatacatagacatccttaggtggcaataca-ccttttgacacccacacaaaaatct 19329903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 185 - 267
Target Start/End: Complemental strand, 46374913 - 46374832
Alignment:
Q  185 actttaacaacgagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtgg 267  Q
    |||||||  |||||| ||||||||| |||||| ||||||||||| ||||||| || |||||||||||||||||| ||| ||||    
T  46374913 actttaatgacgagttatgatacatagacatccttaggtggcaacacaccct-ttaacacccacacaaaaatctgacacgtgg 46374832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 300
Target Start/End: Original strand, 7389389 - 7389493
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| | ||||||||||| |||| || ||||||||||||||||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  7389389 gagtaatgatacatagacacccttaggtggcaatacactct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 7389487  T
Q  295 ctcttt 300  Q
    ||||||    
T  7389488 ctcttt 7389493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 300
Target Start/End: Original strand, 36362026 - 36362130
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| | |||||||| || ||| ||| ||||||||||||||||||||| ||| || || | ||||| ||||||| |||||| |||    
T  36362026 gagtaatgatacatagacacccttaggtggtaatacatcct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccacacaagcacacttt 36362124  T
Q  295 ctcttt 300  Q
    ||||||    
T  36362125 ctcttt 36362130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 219 - 306
Target Start/End: Complemental strand, 2318320 - 2318233
Alignment:
Q  219 taggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc-acacgagcacattttctctttcatctc 306  Q
    |||||||||| ||||| ||||||||||||||||||||||| || |||||| | |||||||| |||  |||| | |||||||||||||||    
T  2318320 taggtggcaagacacc-tcttgacacccacacaaaaatctgacgtgtggtcacgtggacccgacataagcatactttctctttcatctc 2318233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 267
Target Start/End: Complemental strand, 32564526 - 32564456
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtgg 267  Q
    |||| |||||||||  ||||  ||||||||||| |||||| |||||||||||||||||||||| ||||||||    
T  32564526 gagttatgatacataaacattcttaggtggcaatacaccc-cttgacacccacacaaaaatctgacatgtgg 32564456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 258
Target Start/End: Complemental strand, 19436287 - 19436226
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatct 258  Q
    |||||||||||||| |||||| ||||||| ||| ||| ||| |||||||||||||||||||||    
T  19436287 gagtaatgatacatagacatccttaggtgacaataca-ccttttgacacccacacaaaaatct 19436226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 266
Target Start/End: Original strand, 22343361 - 22343430
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtg 266  Q
    |||| |||||||||  ||| | ||||||||||| |||||| |||||||||||||||||||||| |||||||    
T  22343361 gagttatgatacataaacacccttaggtggcaatacaccc-cttgacacccacacaaaaatctgacatgtg 22343430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 196 - 300
Target Start/End: Complemental strand, 8080483 - 8080379
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| | ||||||||||| ||||||| |||||||| ||| |||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  8080483 gagtaatgatacatagacacccttaggtggcaatacaccct-ttgacacctacataaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 8080385  T
Q  295 ctcttt 300  Q
    ||||||    
T  8080384 ctcttt 8080379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 306
Target Start/End: Original strand, 36208214 - 36208283
Alignment:
Q  238 ttgacacccacacaaaaatctaacatgtggtaatgtggaccc-acacgagcacattttctctttcatctc 306  Q
    |||||||||||||||||| || ||||||||| | ||||||||  ||| ||||||||||||||||| ||||    
T  36208214 ttgacacccacacaaaaagctgacatgtggtcacgtggaccctgcacaagcacattttctctttcctctc 36208283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 196 - 300
Target Start/End: Original strand, 38267040 - 38267144
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| | ||| ||| ||| ||||||| ||||||||||||||||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  38267040 gagtaatgatacatagacacccttatgtgacaatacaccct-ttgacacccacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 38267138  T
Q  295 ctcttt 300  Q
    ||||||    
T  38267139 ctcttt 38267144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 219 - 279
Target Start/End: Original strand, 8238236 - 8238295
Alignment:
Q  219 taggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc 279  Q
    |||||||||| ||||||| ||||||||||||||||||||| |||||| || || |||||||    
T  8238236 taggtggcaatacaccct-ttgacacccacacaaaaatctgacatgtagtcatatggaccc 8238295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 187 - 258
Target Start/End: Complemental strand, 10343672 - 10343602
Alignment:
Q  187 tttaacaacgagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatct 258  Q
    |||| ||| |||||||||||||| |||| | |||||||| || ||||  |||||||||||||||||||||||    
T  10343672 tttaccaaagagtaatgatacatagacacccttaggtggaaatacaca-tcttgacacccacacaaaaatct 10343602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 196 - 279
Target Start/End: Complemental strand, 35468955 - 35468873
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtggaccc 279  Q
    |||||||||||||| |||||| |||| |||||| ||| | | |||||||||||| |||||||||| |||||   ||||||||||    
T  35468955 gagtaatgatacatagacatccttagatggcaatacatcat-ttgacacccacataaaaatctaatatgtgaccatgtggaccc 35468873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 196 - 306
Target Start/End: Original strand, 41423682 - 41423792
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||| ||||||||| |||||| |||| ||| || ||||| |||||||||  |||||||||||| ||||||||| | || || |||  || |||| |||||    
T  41423682 gagttatgatacatagacatcattagatggtaatacacc-tcttgacacttacacaaaaatctgacatgtggtcacgtagatcccgtacaagcatatttt 41423780  T
Q  295 ctctttcatctc 306  Q
    ||||||||||||    
T  41423781 ctctttcatctc 41423792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 196 - 267
Target Start/End: Original strand, 41915741 - 41915811
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtgg 267  Q
    |||| |||||||||  ||| | ||||||||||| |||||| ||||||||| |||||||||||| ||||||||    
T  41915741 gagttatgatacataaacacccttaggtggcaatacaccc-cttgacacctacacaaaaatctgacatgtgg 41915811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 300
Target Start/End: Original strand, 3783998 - 3784099
Alignment:
Q  199 taatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctc 297  Q
    ||||||||||| |||| | ||||||||||| ||| | | ||||||||||||||||||||| ||| || || | ||||| ||| ||| |||||| ||||||    
T  3783998 taatgatacatagacacccttaggtggcaatacatctt-ttgacacccacacaaaaatctgacacgtagtcacgtggatcccgcacaagcacactttctc 3784096  T
Q  298 ttt 300  Q
    |||    
T  3784097 ttt 3784099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 258
Target Start/End: Complemental strand, 4999614 - 4999553
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatct 258  Q
    |||||||||||||| |||| | |||| |||||| ||||| | |||||||||||||||||||||    
T  4999614 gagtaatgatacatagacacccttagatggcaatacacctt-ttgacacccacacaaaaatct 4999553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 265
Target Start/End: Original strand, 38044197 - 38044265
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgt 265  Q
    |||| |||||||||  ||| | ||||||||||| |||||| ||||||| |||||||||||||| ||||||    
T  38044197 gagttatgatacataaacacccttaggtggcaatacaccc-cttgacatccacacaaaaatctgacatgt 38044265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 300
Target Start/End: Original strand, 38837217 - 38837321
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacatttt 294  Q
    |||||||||||||| |||| | ||||||||||| ||||||| |  ||||| |||||||||||| ||| || || | ||||| ||| ||| |||||| |||    
T  38837217 gagtaatgatacatagacacccttaggtggcaatacaccct-tgtacacctacacaaaaatctgacacgtagtcacgtggaccccgcacaagcacacttt 38837315  T
Q  295 ctcttt 300  Q
    ||||||    
T  38837316 ctcttt 38837321  T

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Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 300
Target Start/End: Original strand, 35522881 - 35522980
Alignment:
Q  201 atgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggtaatgtgga-cccacacgagcacattttctctt 299  Q
    ||||||||| |||||| ||| ||||||| ||||| | || |||||||||||||||||| ||| ||||  || |||| ||| ||| |||||| ||||||||    
T  35522881 atgatacatagacatccttaagtggcaatacaccat-ttaacacccacacaaaaatctgacacgtggccatatggatcccgcacaagcacactttctctt 35522979  T

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Target: scaffold1268 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 255
Target Start/End: Complemental strand, 1029 - 971
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaa 255  Q
    |||||||||||||| |||||||||||||||||| ||||||| || ||| |||||||||||    
T  1029 gagtaatgatacatagacatctttaggtggcaatacaccct-ttaacatccacacaaaaa 971  T

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Target: scaffold1267 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 255
Target Start/End: Complemental strand, 1029 - 971
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaa 255  Q
    |||||||||||||| |||||||||||||||||| ||||||| || ||| |||||||||||    
T  1029 gagtaatgatacatagacatctttaggtggcaatacaccct-ttaacatccacacaaaaa 971  T

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Target: scaffold0018 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 221 - 268
Target Start/End: Original strand, 152523 - 152569
Alignment:
Q  221 ggtggcaaaacaccctcttgacacccacacaaaaatctaacatgtggt 268  Q
    |||||||| |||||| |||||||||||||||||||||| |||||||||    
T  152523 ggtggcaatacaccc-cttgacacccacacaaaaatctgacatgtggt 152569  T

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Target: scaffold0237 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 258
Target Start/End: Original strand, 4029 - 4090
Alignment:
Q  196 gagtaatgatacatggacatctttaggtggcaaaacaccctcttgacacccacacaaaaatct 258  Q
    |||||||||||||| |||| |||||| |||||| ||| ||| || ||||||||||||||||||    
T  4029 gagtaatgatacatagacacctttagatggcaataca-ccttttaacacccacacaaaaatct 4090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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