View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21633_low_1 (Length: 611)
Name: NF21633_low_1
Description: NF21633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21633_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 435; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 61 - 599
Target Start/End: Original strand, 44005776 - 44006310
Alignment:
| Q |
61 |
acattattatagtaatgtgaatatatgaaaacttctcttaggcagatggaacaaaaccaacgctgtgtttggacaaaatctatcaaaagaatgtaatcct |
160 |
Q |
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| T |
44005776 |
acattattatagtaatgtgaatatatgaaaacttctcttaggcagatggaacaaaaccaacgctgtgtttggacaaaatctatcaaaagaatgtaatcct |
44005875 |
T |
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| Q |
161 |
tataattaaattagtattatgcaaagtctagaggccagaagaggnnnnnnnggaattcctagtgtcatctgcatggctatgttcttacatatccattgtc |
260 |
Q |
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| T |
44005876 |
tataattaaattagtattatgcaaagtctagaggccagaagaggaaaaaaaggaattcctagtgtcatctgcatggctatgttcttacatatccattgtc |
44005975 |
T |
|
| Q |
261 |
tttacttttgttggtattgatctataacgggagaataaaaagtaacatgattatgcaaataattcagatttattttgtttaagcaactgccatgtctata |
360 |
Q |
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| T |
44005976 |
tttacttttgttgatattgatctataacgggagaataaaaagtaacatgattatgcaaataattcagatttattttgtttaagcaactgccatgtctata |
44006075 |
T |
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| Q |
361 |
gtaattattactgtgttagctcagctgctgctgttatttttcttgttgtttctctcttttgtattcccttttgcgtgctcttgctcatcttgtgctcaaa |
460 |
Q |
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| T |
44006076 |
gtaattattactgtgttagctcagctgctgctgttatttttc---ttgtttctctcttttgtattcccttttgcgtgctcttgctcatcttgtgctcaaa |
44006172 |
T |
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| Q |
461 |
gcttcctgtgattaataaattttgctaattcnnnnnnnnnnnnntgtctatagtaatcggatgtttttctttgnnnnnnnctacaaccaaatgttattat |
560 |
Q |
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| T |
44006173 |
gcttcctgtgattaataaattttgctaattc-aaaaaaaaaatatgtctatagtaatcggatgtttttctttgaaaaaaactacaaccaaatgttattat |
44006271 |
T |
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| Q |
561 |
gaaagtgatcaattgtcctgtctaaagtaacatgatgat |
599 |
Q |
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| T |
44006272 |
gaaagtgatcaattgtcctgtctaaagtaacatgatgat |
44006310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 67 - 159
Target Start/End: Original strand, 44009759 - 44009852
Alignment:
| Q |
67 |
ttatagtaatgtgaatatatgaaaacttctcttaggcagatggaacaaaaccaacgctgtgtt-tggacaaaatctatcaaaagaatgtaatcc |
159 |
Q |
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|||||||||| | ||||||| || |||||| |||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
44009759 |
ttatagtaatattaatatatacaatcttctcataggtagatggaacaaaaccaatgctgtgttgtggacaaaatctatcaaaagaatgtaatcc |
44009852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 32 - 71
Target Start/End: Original strand, 44005735 - 44005774
Alignment:
| Q |
32 |
ctctttcggtcccattttcagcatcatgaacattattata |
71 |
Q |
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| T |
44005735 |
ctctttcggtcccattttcagcatcatgaacattattata |
44005774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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