View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21633_low_2 (Length: 509)
Name: NF21633_low_2
Description: NF21633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21633_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 396; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 1 - 492
Target Start/End: Original strand, 7035878 - 7036375
Alignment:
| Q |
1 |
tctttcccatgaaagacgcttaaaataatacagttccctccagatgaaataatatgcgacactacagcccattttaatgtatataaaccaactggtgagc |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7035878 |
tctttcccatgaaagacacttaaaataatacagttccctccagatgaaataatatgtgacactacagcccattttaatgtatataaaccaactggtgagc |
7035977 |
T |
|
| Q |
101 |
aaatcacctaaagccannnnnnnnnnnnnnagaattgtca-tgtatcatccagaaaatctcacttgaacaccatattat-----tttattttattttggg |
194 |
Q |
| |
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|||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
7035978 |
aaatcacctaaagccatttttttctttttcagaattgtcaatgtatcatccagaaaatctcacttgaacaccatattattttattttattttattttggg |
7036077 |
T |
|
| Q |
195 |
tgtggagttggttgggttgcacaactagtttgagctgaggattaaagttgaaggccccgggtgcaaacccgcgtaaaggagaaagattctaacaaccaat |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
7036078 |
tgtggagttggttgggttgcacaactagtttgagctgaggattagagttggaggccccgggtacaaacccgtgtaaaggagaaagattctaacaaccaat |
7036177 |
T |
|
| Q |
295 |
tactaacattggcattttaaacgaaatagaaaattaagacttcaaaagattaaataaatttcaaattatctgctttgggatttcacccaaaaccatcatt |
394 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7036178 |
tactaacattggcattttaaacgaaatagaaaattaagacttcaaaagattaaataaatttcaaattatctgctttgggatttcacccaaaaccatcatt |
7036277 |
T |
|
| Q |
395 |
tcattttctatatccccaaattgagtttaaaaactatttgccatttatttatactaattaaaattgcccctatttgtgagctgtattttcctaatagt |
492 |
Q |
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| T |
7036278 |
tcattttctacatccccaaattgagtttaaaaactatttgcgatttatttatactaattaaaattgcccctatttgtgagctgtattttcctaatagt |
7036375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 492
Target Start/End: Original strand, 7897118 - 7897604
Alignment:
| Q |
1 |
tctttcccatgaaagacgcttaaaataatacagttccctccagatgaaataatatgcgacactacagcccattttaatgtatataaaccaactggtgagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7897118 |
tctttcccatgaaagacgcttaaaataatacagttccctccagatgaaataatatgcgacactacagcccattttaatgtatataaaccaactggtgagc |
7897217 |
T |
|
| Q |
101 |
aaatcacctaaagccannnnnnnnnnnnnnagaattgtca-tgtatcatccagaaaatctcacttgaacaccatattattttattttattttgggtgtgg |
199 |
Q |
| |
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|||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
7897218 |
aaatcacctaaagccatttttttcttttttagaattgtcaatgtatcatccagaaaatctcactcgaacaccatattat-----tttattttgggtgtgg |
7897312 |
T |
|
| Q |
200 |
agttggttgggttgcacaactagtttgagctgaggattaaagttgaaggccccgggtgcaaacccgcgtaaaggagaaagattctaacaaccaattacta |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| | ||||||||||||||| |
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| T |
7897313 |
agttggttgggttgcacaactagtttgagctgaggattaaagttggaggccccgggtgcaaacccgtgtaaaggagaaagataccaacaaccaattacta |
7897412 |
T |
|
| Q |
300 |
acattggcattttaaacgaaatagaaaattaagacttcaaaagattaaataaatttcaaattatctgctttgggatttcacccaaaaccatcatttcatt |
399 |
Q |
| |
|
||||||||||||||||| ||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
7897413 |
acattggcattttaaacaaaaaagaaaattaggacttcaaaagatt-aataaatttcaaattatctgctttgggatttctcccaaaaccatcatttcatt |
7897511 |
T |
|
| Q |
400 |
ttctatatccccaaattgagtttaaaaactatttgccatttatttatactaattaaaattgcccctatttgtgagctgtattttcctaatagt |
492 |
Q |
| |
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||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
7897512 |
ttctacatccccaaattgagtttaaaaactatttggcatttatttatactaattaaaatttcccctatttgtgagctgtattttcctaatagt |
7897604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 43 - 111
Target Start/End: Original strand, 29380357 - 29380425
Alignment:
| Q |
43 |
gatgaaataatatgcgacactacagcccattttaatgtatataaaccaactggtgagcaaatcacctaa |
111 |
Q |
| |
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|||||||||||||| ||||||||| | || |||||||| |||||||||||||| |||||| ||||||| |
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| T |
29380357 |
gatgaaataatatgttacactacagtctatcttaatgtacataaaccaactggttagcaaaccacctaa |
29380425 |
T |
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Back To:
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