View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21633_low_3 (Length: 505)
Name: NF21633_low_3
Description: NF21633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21633_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 1 - 491
Target Start/End: Original strand, 3568489 - 3568979
Alignment:
| Q |
1 |
tcggttgcagctgcgtcggtttcaagttttgtagagcacgttgaagtgcatgatgatttggcttctactgatttggtttctgctagagagcaatctcctt |
100 |
Q |
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| T |
3568489 |
tcggttgcagctgcgtccgtttcaagttttgtagagcacgttgaagtgcatgatgatttggcttctactgatttggtttctgctagagaggaatctcctt |
3568588 |
T |
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| Q |
101 |
tgctggtccaacatttctcccaagaggaagtgtgcatagaccacacgattgaaggaatacgcccttctggctcctcacccacattggcgcatcagcagaa |
200 |
Q |
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| T |
3568589 |
tgctggtccaacatttctcccaagaggaagtgtgcatagaccacatgattgaaggaatacgcccttctggctcctcacccacattggcgcatcagcagaa |
3568688 |
T |
|
| Q |
201 |
tgatcttgctaactcggccaacatagcacatttagattatgagggcgtgcacagtgaggagcaacagctggttgcacgtgaggatgctgcccattcagat |
300 |
Q |
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| T |
3568689 |
tgatcttgctaactcggccaacatagcacatttggattatgagggcgtgcacagtgaggagcaacagctggttgcacgtgaggatgctgcccattcagat |
3568788 |
T |
|
| Q |
301 |
atctctatggcaaatctttaagcaacagtaacattcatgagattggttctaacaaggatatacatcctaacatccaacatgacatggaacttgttggtaa |
400 |
Q |
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| T |
3568789 |
atctctatggcaaatctttaagcaacagtaacattcatgagattggttctaacaaggatatatatcctaacatccaacatgacatggaacttgttggtaa |
3568888 |
T |
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| Q |
401 |
ttcaggtaccgtcatgtctgaagatagtagcatgcttgcggttcaacctgattttttggcagatgatatagttcattatagtaacacaggt |
491 |
Q |
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| T |
3568889 |
ttcaggtaccgtcatgtctgaagatagtagcatgcttgcggttcaacctggttttttggcagatgatatagttcataatagtaacacaggt |
3568979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 411 - 495
Target Start/End: Original strand, 18485273 - 18485357
Alignment:
| Q |
411 |
gtcatgtctgaagatagtagcatgcttgcggttcaacctgattttttggcagatgatatagttcattatagtaacacaggttctg |
495 |
Q |
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||||||||||||| ||||||||||| |||||||| | ||||||||||||||| |||||| | || |||||| |||||||| |
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| T |
18485273 |
gtcatgtctgaaggcagtagcatgctcgcggttcagtttaattttttggcagatgcggtagttcttaatggtaacataggttctg |
18485357 |
T |
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