View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21633_low_4 (Length: 392)
Name: NF21633_low_4
Description: NF21633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21633_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 373
Target Start/End: Complemental strand, 40310196 - 40309824
Alignment:
| Q |
1 |
aacagtccacatttccatagggaatcatccacatcttcatttgattcagaagcaaaggattgcaacccaacctcttcaaagttgacaagcataacgtcaa |
100 |
Q |
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| T |
40310196 |
aacagtccacatttccatagggaatcatccacatcttcatttgattcagaagcaaaggattgcaacccaacctcttcaaagttgacaagcataatgtcaa |
40310097 |
T |
|
| Q |
101 |
aacgaggtccatatttaacagcattaaatgtaccaggaaggtcatttaatcaaaagcctccatctcccatccgtgtactgcctaaagatctaaaaatatc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40310096 |
aacgaggtccatatttaacagcattaaatgtaccaggaaggtcatttaatcaaaagcctccatctcccatccgcgtactgcctaaagatctaaaaatatc |
40309997 |
T |
|
| Q |
201 |
taaagttcagttatttaaggatcaaccatataatgttgctaatgaaaacattattccctttgtcgcggaaaaagttccaggtgacaactctttgtatgta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
40309996 |
taaagttcagttatttaaggatcaaccatataatgttgctaatgaaaacattattccctttgtcgcagaaaaagttccaggtgacaactctttgtatgta |
40309897 |
T |
|
| Q |
301 |
gacaataccaattttgttaatccgattgcttattataacaaacttcctcaagggtctccatgtgtgaactgtc |
373 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40309896 |
gacaataccaattttgttaatccgattgcttattataacaaacttcctcaagggtctccatgtgtgaactgtc |
40309824 |
T |
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