View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21633_low_5 (Length: 366)

Name: NF21633_low_5
Description: NF21633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21633_low_5
NF21633_low_5
[»] chr3 (6 HSPs)
chr3 (157-217)||(23089491-23089551)
chr3 (157-217)||(23086259-23086319)
chr3 (166-225)||(23068008-23068066)
chr3 (166-225)||(23071413-23071472)
chr3 (88-124)||(23086354-23086390)
chr3 (76-124)||(23089408-23089456)


Alignment Details
Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 23089491 - 23089551
Alignment:
Q  157 ctcggtctcatatataagttccgtttgtttttcttcaaactttataagaaaaattgttatt 217  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  23089491 ctcggtctcatatataagttccgtttgtttttcttcaaaatttatacgaaaaattgttatt 23089551  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 157 - 217
Target Start/End: Complemental strand, 23086319 - 23086259
Alignment:
Q  157 ctcggtctcatatataagttccgtttgtttttcttcaaactttataagaaaaattgttatt 217  Q
    |||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||    
T  23086319 ctcggtctcatatataagttccatttgtttttcttcaaaatttatacgaaaaattgttatt 23086259  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 225
Target Start/End: Original strand, 23068008 - 23068066
Alignment:
Q  166 atatataagttccgtttgtttttcttcaaactttataagaaaaattgttattgcaattaa 225  Q
    |||||||||||| ||||||||||||||| | ||| |||||||||||||||||| ||||||    
T  23068008 atatataagttctgtttgtttttcttcaca-tttttaagaaaaattgttattgtaattaa 23068066  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 225
Target Start/End: Original strand, 23071413 - 23071472
Alignment:
Q  166 atatataagttccgtttgtttttcttcaaactttataagaaaaattgttattgcaattaa 225  Q
    |||||||||||| ||||||||||||||| | |||  ||||||||||||||||| ||||||    
T  23071413 atatataagttctgtttgtttttcttcacatttttcaagaaaaattgttattgtaattaa 23071472  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 124
Target Start/End: Complemental strand, 23086390 - 23086354
Alignment:
Q  88 cattaatctgaccatgactatctcaagttaatggacc 124  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  23086390 cattaatctgaccatgacaatctcaagtcaatggacc 23086354  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 124
Target Start/End: Original strand, 23089408 - 23089456
Alignment:
Q  76 ttgatttactgtcattaatctgaccatgactatctcaagttaatggacc 124  Q
    |||||||||||||||| ||||| ||||||| || |||||| ||||||||    
T  23089408 ttgatttactgtcatttatctgcccatgacaatatcaagtcaatggacc 23089456  T

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