View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21633_low_6 (Length: 364)
Name: NF21633_low_6
Description: NF21633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21633_low_6 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 124 - 364
Target Start/End: Complemental strand, 48996047 - 48995807
Alignment:
| Q |
124 |
cctacttcacaccaaagttccatagccaagccaaccaccttgaattcaaacacccagcttgataaactctggtcatcttcattttaggggaaacttgctt |
223 |
Q |
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| T |
48996047 |
cctacttcacaccaaagttccatagccaagccaaccaccttgaattcaaccacccagcttgataaactctggtcatcttcattttaggggaaacttgctt |
48995948 |
T |
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| Q |
224 |
aattgtactttgtggaagggtcatgccagatcattcctcaatggttctgatcagacaactgaggaaaccaatttgttgtgattataaggaaggttgtggt |
323 |
Q |
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| T |
48995947 |
aattgtactttgtgggagggtcatgccagatcattcctcaatggttctgatcagacaactgaggaaaccaatttgttgtgattataaggaaggttgtagt |
48995848 |
T |
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| Q |
324 |
tcaggaagtaaccggtaaagttaattcatgacattagatga |
364 |
Q |
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| T |
48995847 |
tcaggaagtaaccggtaaagttaattcatgacattagatga |
48995807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 18 - 96
Target Start/End: Complemental strand, 48996153 - 48996075
Alignment:
| Q |
18 |
aattactgctgcaagcgtgttaaaactcacattcattaatttcccagcaattgtgagactaaggaattaaggatgtata |
96 |
Q |
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| T |
48996153 |
aattactgctgcaagcgtgttaaaactcacattcattaatttcccagcaaatgcgagactaaggaattaaggatgtata |
48996075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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