View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21633_low_8 (Length: 339)
Name: NF21633_low_8
Description: NF21633
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21633_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 264; Significance: 1e-147; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 12 - 323
Target Start/End: Complemental strand, 4835849 - 4835538
Alignment:
| Q |
12 |
aatattaagaatcaaaacctgaccaaaacttcactctatgttatttaaaactatcatgatcaacttcctatctatgagcccgatcttgatgaatgatgat |
111 |
Q |
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| T |
4835849 |
aatattaagaatcaaaacctaaccaaaacttcactctgtgttatttaaaactatcatgatcaacttcctatctatgagcccgatcttgatgaatgatgat |
4835750 |
T |
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| Q |
112 |
gtagtaaagcaatgtcgcagaaagaaccttttcttcagcattgatgtcaaaaaacatgttatacaactgacatagtatttgtatctgtcaatacaccaac |
211 |
Q |
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| T |
4835749 |
gtagtaaagcaatgtcgcagaaagaaccttttcttcagcattgatgtcaaaaaacatgttatacagctgacatagtgtttgtatctgtcaatacaccaac |
4835650 |
T |
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| Q |
212 |
gaaaacttgcgtctcaaagttggaaaagcggcaaatttgacttattgggaaagtgcggctcagatgattgccgatgtgttcaagccattcaagacatttt |
311 |
Q |
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| T |
4835649 |
aaaaacttgcgcctcaatgttggaaaagtggcagatttgacgtattgggaaagtgcaactcagatgattgccgatgtgttcaagccattcaagacatttt |
4835550 |
T |
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| Q |
312 |
gtatcttccttc |
323 |
Q |
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| T |
4835549 |
gtatcttccttc |
4835538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 105 - 170
Target Start/End: Original strand, 4797977 - 4798042
Alignment:
| Q |
105 |
tgatgatgtagtaaagcaatgtcgcagaaagaaccttttcttcagcattgatgtcaaaaaacatgt |
170 |
Q |
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| T |
4797977 |
tgatgatgtagtaaagcaatatcgcggcaagaaccttttcttcagcactgatgttaaaaaacatgt |
4798042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 105 - 290
Target Start/End: Complemental strand, 4829392 - 4829206
Alignment:
| Q |
105 |
tgatgatgtagtaaagcaatgtcgcagaaagaaccttttcttcagcattgatgtcaaaaaacatgt-tatacaactgacatagtatttgtatctgtcaat |
203 |
Q |
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| T |
4829392 |
tgatgatgtagcaaagcaatttcgtggcaagaac-ttttcttcagctatgatgttaaaaaatatgtctacgaagctgacatagtgtttgtatctgttgat |
4829294 |
T |
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| Q |
204 |
acaccaacgaaaacttgcg-tctcaaagttggaaaagcggcaaatttgacttattgggaaagtgcggctcagatgattgccgatgtgt |
290 |
Q |
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| T |
4829293 |
acactgacaaaaactcgcggtctcagggctggaaaagtagtagatttgacgtattgggagagtgcgactcgggtgattgccgatgtgt |
4829206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 105 - 170
Target Start/End: Complemental strand, 4819593 - 4819528
Alignment:
| Q |
105 |
tgatgatgtagtaaagcaatgtcgcagaaagaaccttttcttcagcattgatgtcaaaaaacatgt |
170 |
Q |
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| T |
4819593 |
tgatgatgtagtaaagcaatgtcgcggcaagagctttttcttcagcattcaagttgaaaaacatgt |
4819528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 105 - 170
Target Start/End: Complemental strand, 10779387 - 10779323
Alignment:
| Q |
105 |
tgatgatgtagtaaagcaatgtcgcagaaagaaccttttcttcagcattgatgtcaaaaaacatgt |
170 |
Q |
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| T |
10779387 |
tgattatgtagtaaagtaatgtcgcagcaaga-ccttttcttcagcactgatgttgaaaaacatgt |
10779323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 171
Target Start/End: Complemental strand, 4815012 - 4814946
Alignment:
| Q |
105 |
tgatgatgtagtaaagcaatgtcgcagaaagaaccttttcttcagcattgatgtcaaaaaacatgtt |
171 |
Q |
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| T |
4815012 |
tgatgatgtattaaagcaatgttgctgtaagaaccttttctttggaattgatgttgaaaaacatgtt |
4814946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 170
Target Start/End: Complemental strand, 4803996 - 4803931
Alignment:
| Q |
105 |
tgatgatgtagtaaagcaatgtcgcagaaagaaccttttcttcagcattgatgtcaaaaaacatgt |
170 |
Q |
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|||||||||||||||||||||||| | ||| ||||| |||||| || |||||| |||||||||| |
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| T |
4803996 |
tgatgatgtagtaaagcaatgtcgatgcaagtaccttgtcttcaacactgatgttgaaaaacatgt |
4803931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 171
Target Start/End: Complemental strand, 4807532 - 4807483
Alignment:
| Q |
122 |
aatgtcgcagaaagaaccttttcttcagcattgatgtcaaaaaacatgtt |
171 |
Q |
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| T |
4807532 |
aatgtcgcaataagaaccttttcttcagaattgatgttgaaaaacatgtt |
4807483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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