View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21634_high_14 (Length: 235)
Name: NF21634_high_14
Description: NF21634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21634_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 5e-86; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 7622808 - 7622589
Alignment:
| Q |
1 |
ttattacttaaggatttctaacagtattttgtttctttttgaaacaaaattcttagtaagaaaaataactattccaannnnnnnnnnnnncagtaaaata |
100 |
Q |
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| T |
7622808 |
ttattacttaaggatttctaacagtattttgtttctttttgaaacaaaattcttagtaagaaaaagaactattccaatttttggttttttcagtaaaata |
7622709 |
T |
|
| Q |
101 |
agttttgttcattcaaatgttaaaataagaataatacaatcaaaaggagcatcaacaaaccaaaatcctaattctaacaaaccaaactaattcatttcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
7622708 |
agttttgttcattcaaatgttaaaataagaataatacaatcaaaaggagcatcaacaaaccaaaatgctaattctaacaaaccaaactaattcctttcca |
7622609 |
T |
|
| Q |
201 |
catgtctccatagggaaata |
220 |
Q |
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||| |||||||||| ||||| |
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| T |
7622608 |
catatctccataggtaaata |
7622589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 146
Target Start/End: Original strand, 16601228 - 16601266
Alignment:
| Q |
108 |
ttcattcaaatgttaaaataagaataatacaatcaaaag |
146 |
Q |
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| T |
16601228 |
ttcattcaaatgttgaaataggaataatacaatcaaaag |
16601266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 16868898 - 16868950
Alignment:
| Q |
94 |
taaaataagttttgttcattcaaatgttaaaataagaataatacaatcaaaag |
146 |
Q |
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|||||||| ||| |||||||||||||||||||||| | |||| ||||||||| |
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| T |
16868898 |
taaaataaatttcattcattcaaatgttaaaataagcaaaatataatcaaaag |
16868950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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