View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21634_high_2 (Length: 435)
Name: NF21634_high_2
Description: NF21634
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21634_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 18 - 423
Target Start/End: Original strand, 44574955 - 44575376
Alignment:
| Q |
18 |
gataggacatcgcatgattctgacctaacctaacccgcaagtctactcagtcactcccttttgcaaccaacgccgtcactcttatcattcaccaatcctc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
44574955 |
gataggacatcgcatgattctgacctaacctaacccgcaagtctactcagtcactcccttttgcaaccaacgccgtcactcttatcattcaccaatcgtc |
44575054 |
T |
|
| Q |
118 |
gtacgtagagaaattctttcaatggctgcagcaacagatttatatttacctgatgagtgttgc----------------tcttgaactgttacggctaca |
201 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
44575055 |
gtacgtagagaaattctttcaatggctgcagcaacagatttatatttacctgatgagtgttgggaacacatcttcaaattcttcaactgttacggctaca |
44575154 |
T |
|
| Q |
202 |
gcgacaactactacaacagctacttgaagtctctctccatcatctcaaaacagtttctctcaatcaccaatcgtctcaaactatcactcatgatccgtga |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44575155 |
gcgacaactactacaacagctacttgaagtctctctccatcgtctcaaaacagtttctctcaatcaccaatcgtctcaaactatcactcatgatccgtga |
44575254 |
T |
|
| Q |
302 |
caccacactccctttcctcggtcaactcttccaaaggttccccaaacctcaccctcatgagctatcattgcttcttgcaattaacacaaaccaataataa |
401 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44575255 |
caccacactccctttcctcggtcaactcttccaaaggttccccaaacctcaccctcatgagctatcattgcttcttgcaattaacacaaaccaataataa |
44575354 |
T |
|
| Q |
402 |
ttctatttctttgatggatttt |
423 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
44575355 |
ttctatttctttgatggatttt |
44575376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 223 - 278
Target Start/End: Complemental strand, 44246646 - 44246591
Alignment:
| Q |
223 |
acttgaagtctctctccatcatctcaaaacagtttctctcaatcaccaatcgtctc |
278 |
Q |
| |
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|||||| ||| ||||| ||| ||||||||||||||||||||||||| |||||||| |
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|
| T |
44246646 |
acttgacgtccctctctatcgtctcaaaacagtttctctcaatcactgatcgtctc |
44246591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 179
Target Start/End: Original strand, 17626863 - 17626905
Alignment:
| Q |
137 |
caatggctgcagcaacagatttatatttacctgatgagtgttg |
179 |
Q |
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|||||| ||||||| ||||||||||||||||| |||||||||| |
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| T |
17626863 |
caatggttgcagcagcagatttatatttacctaatgagtgttg |
17626905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 272
Target Start/End: Complemental strand, 548320 - 548270
Alignment:
| Q |
222 |
tacttgaagtctctctccatcatctcaaaacagtttctctcaatcaccaat |
272 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||| ||||||||| |
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|
| T |
548320 |
tacttgaagtctctctctgttgtctcaaaacagtttctctccatcaccaat |
548270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 278
Target Start/End: Complemental strand, 2486366 - 2486318
Alignment:
| Q |
230 |
gtctctctccatcatctcaaaacagtttctctcaatcaccaatcgtctc |
278 |
Q |
| |
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|||||||||| || |||||||||||||||| || |||||||| |||||| |
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| T |
2486366 |
gtctctctccctcgtctcaaaacagtttctgtccatcaccaaccgtctc |
2486318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 6587906 - 6587947
Alignment:
| Q |
138 |
aatggctgcagcaacagatttatatttacctgatgagtgttg |
179 |
Q |
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|||||||||||||||| |||||||||||||| |||| ||||| |
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| T |
6587906 |
aatggctgcagcaacatatttatatttaccttatgattgttg |
6587947 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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